Wall clock time and date at job start Mon Mar 30 2020 21:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47725 * 2 1 4 4 C 1.50703 * 109.47361 * 239.99376 * 2 1 3 5 5 H 1.07996 * 120.00163 * 240.00927 * 4 2 1 6 6 C 1.37877 * 119.99740 * 59.99905 * 4 2 1 7 7 N 1.31515 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99789 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47059 * 60.00731 * 8 6 4 10 10 H 1.48501 * 109.46709 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47137 * 300.00248 * 8 6 4 12 12 N 1.46902 * 109.46972 * 119.99865 * 2 1 3 13 13 C 1.46900 * 110.99888 * 275.00061 * 12 2 1 14 14 C 1.53003 * 109.47407 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.47269 * 305.00036 * 14 13 12 16 16 O 1.42903 * 109.46459 * 64.99929 * 14 13 12 17 17 C 1.50696 * 109.47222 * 184.99595 * 14 13 12 18 18 C 1.39868 * 126.04166 * 280.02344 * 17 14 13 19 19 N 1.30842 * 108.20294 * 179.97438 * 18 17 14 20 20 N 1.40086 * 108.20425 * 0.02562 * 19 18 17 21 21 C 1.46496 * 126.03675 * 179.97438 * 20 19 18 22 22 C 1.34947 * 107.92473 * 359.75426 * 20 19 18 23 23 H 1.09003 * 109.46471 * 60.00341 * 1 2 3 24 24 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46860 * 300.00500 * 1 2 3 26 26 H 0.97002 * 119.99981 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00196 * 38.94727 * 12 2 1 28 28 H 1.09005 * 109.47208 * 59.99899 * 13 12 2 29 29 H 1.08999 * 109.46786 * 299.99678 * 13 12 2 30 30 H 0.96700 * 114.00311 * 60.00313 * 16 14 13 31 31 H 1.08001 * 125.89900 * 359.96736 * 18 17 14 32 32 H 1.09002 * 109.47127 * 89.97692 * 21 20 19 33 33 H 1.08998 * 109.47209 * 209.97282 * 21 20 19 34 34 H 1.09000 * 109.47223 * 329.97336 * 21 20 19 35 35 H 1.08003 * 126.13108 * 180.23626 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8281 -2.5202 -4.0080 10 1 1.8280 -0.4197 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5330 3.5746 15 1 1.9690 -1.4079 3.7502 16 8 3.9432 -0.9494 3.3489 17 6 2.5435 0.3714 4.7788 18 6 3.4782 1.3588 5.1070 19 7 3.0941 1.9319 6.2188 20 7 1.9014 1.3258 6.6342 21 6 1.1335 1.6673 7.8341 22 6 1.5821 0.3752 5.7311 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7096 1.1615 -3.4845 27 1 1.4495 -1.4978 1.4102 28 1 1.0870 0.6164 2.5525 29 1 2.7589 1.0462 2.1182 30 1 4.5577 -0.2210 3.1851 31 1 4.3640 1.6056 4.5406 32 1 0.4052 2.4411 7.5914 33 1 0.6141 0.7807 8.1976 34 1 1.8099 2.0342 8.6061 35 1 0.7157 -0.2688 5.7637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308861279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:15 Heat of formation + Delta-G solvation = 29.798332 kcal Electronic energy + Delta-G solvation = -16802.951318 eV Core-core repulsion = 14030.907781 eV Total energy + Delta-G solvation = -2772.043538 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27117 -37.36056 -35.29346 -33.23535 -32.42046 -30.90454 -29.00082 -27.24712 -25.41154 -24.98603 -22.19818 -21.15633 -20.31731 -19.98443 -17.37905 -16.45734 -15.58501 -15.45584 -14.99731 -14.77375 -14.40941 -13.95518 -13.80423 -13.10908 -12.93918 -12.73417 -12.58733 -12.39363 -11.65121 -11.48846 -11.18735 -10.88716 -10.76052 -10.53857 -10.45286 -10.10660 -10.03603 -9.58149 -9.47556 -8.95596 -8.37597 -8.30604 -7.12291 -5.93177 -3.96046 1.81056 2.42954 2.75090 3.39013 3.42269 3.46453 4.35296 4.49192 4.73482 4.85520 4.90538 4.97322 5.14404 5.24060 5.37800 5.38712 5.55493 5.74507 5.81935 6.00930 6.30472 6.50170 6.59575 6.72583 6.87029 6.90365 7.13954 7.41105 7.61114 7.77821 7.94514 8.05553 8.33429 8.61102 8.68978 9.11764 9.69210 11.13898 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004543 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.619301 B = 6161.745429 C = 6417.403153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.277 1.277 12 N -0.675 5.675 13 C 0.037 3.963 14 C 0.189 3.811 15 H 0.095 0.905 16 O -0.544 6.544 17 C -0.259 4.259 18 C 0.060 3.940 19 N -0.300 5.300 20 N -0.380 5.380 21 C 0.103 3.897 22 C 0.060 3.940 23 H 0.088 0.912 24 H 0.027 0.973 25 H 0.003 0.997 26 H 0.259 0.741 27 H 0.324 0.676 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.370 0.630 31 H 0.183 0.817 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 0.696 17.930 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.093 4.093 14 C 0.128 3.872 15 H 0.113 0.887 16 O -0.348 6.348 17 C -0.271 4.271 18 C -0.126 4.126 19 N -0.121 5.121 20 N -0.163 5.163 21 C -0.039 4.039 22 C -0.086 4.086 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.217 0.783 31 H 0.200 0.800 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.084 1.241 18.721 18.762 hybrid contribution -0.886 -0.222 -1.288 1.579 sum -0.970 1.020 17.433 17.490 Atomic orbital electron populations 1.22434 1.00890 0.99127 1.00367 1.19175 0.89452 0.94372 0.86690 0.95050 1.21154 1.30035 1.12402 0.89587 0.91887 1.24956 0.95391 0.95229 0.99038 1.69880 1.37499 1.23269 1.23351 0.86563 0.79224 0.79583 0.82010 1.20385 1.21557 1.20264 1.60736 1.58008 1.08667 1.03067 1.22569 0.98972 0.96266 0.91515 1.20069 0.84435 0.94396 0.88258 0.88712 1.86575 1.17848 1.36813 1.93527 1.20991 0.98722 1.05221 1.02180 1.23681 0.99979 0.94610 0.94367 1.77325 0.98159 1.21197 1.15469 1.48462 1.19247 1.28265 1.20314 1.21820 0.95306 1.02177 0.84548 1.22292 1.00602 0.94754 0.90913 0.89332 0.95345 0.97776 0.93104 0.85966 0.95906 0.91543 0.78339 0.80027 0.90858 0.89578 0.89434 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.36 2.57 -68.86 -0.18 5.18 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.05 11.32 55.43 0.63 -25.42 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.40 6.18 -107.95 -0.67 -15.07 16 13 C 0.04 0.66 5.10 -3.82 -0.02 0.64 16 14 C 0.19 2.78 3.59 -27.88 -0.10 2.68 16 15 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 16 O -0.54 -8.53 13.21 -35.23 -0.47 -8.99 16 17 C -0.26 -3.45 5.11 -105.06 -0.54 -3.99 16 18 C 0.06 0.79 11.44 -17.36 -0.20 0.59 16 19 N -0.30 -4.19 12.58 30.63 0.39 -3.80 16 20 N -0.38 -4.42 4.01 -68.16 -0.27 -4.69 16 21 C 0.10 0.70 11.47 59.84 0.69 1.39 16 22 C 0.06 0.70 11.40 -17.22 -0.20 0.50 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 24 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.32 6.59 8.47 -39.29 -0.33 6.26 16 28 H 0.02 0.41 7.44 -51.93 -0.39 0.02 16 29 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.37 4.71 8.36 45.56 0.38 5.09 16 31 H 0.18 1.94 7.76 -52.49 -0.41 1.54 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.17 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 298.21 15.07 4.49 4.49 Total: -1.00 -33.00 298.21 -5.88 -38.88 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.35 Total: 7.33 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.61 Total: -9.49 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.07 Total: -48.98 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.47 Total: -8.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.00 -5.88 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308861279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.675 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds