Wall clock time and date at job start Mon Mar 30 2020 21:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47725 * 2 1 4 4 C 1.50703 * 109.47361 * 239.99376 * 2 1 3 5 5 H 1.07996 * 120.00163 * 240.00927 * 4 2 1 6 6 C 1.37877 * 119.99740 * 59.99905 * 4 2 1 7 7 N 1.31515 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99789 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47059 * 60.00731 * 8 6 4 10 10 H 1.48501 * 109.46709 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47137 * 300.00248 * 8 6 4 12 12 N 1.46902 * 109.46972 * 119.99865 * 2 1 3 13 13 C 1.46900 * 110.99888 * 275.00061 * 12 2 1 14 14 C 1.53003 * 109.47407 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.47269 * 305.00036 * 14 13 12 16 16 O 1.42903 * 109.46459 * 64.99929 * 14 13 12 17 17 C 1.50696 * 109.47222 * 184.99595 * 14 13 12 18 18 C 1.39868 * 126.04166 * 280.02344 * 17 14 13 19 19 N 1.30842 * 108.20294 * 179.97438 * 18 17 14 20 20 N 1.40086 * 108.20425 * 0.02562 * 19 18 17 21 21 C 1.46496 * 126.03675 * 179.97438 * 20 19 18 22 22 C 1.34947 * 107.92473 * 359.75426 * 20 19 18 23 23 H 1.09003 * 109.46471 * 60.00341 * 1 2 3 24 24 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46860 * 300.00500 * 1 2 3 26 26 H 0.97002 * 119.99981 * 179.97438 * 7 6 4 27 27 H 1.00901 * 111.00196 * 38.94727 * 12 2 1 28 28 H 1.09005 * 109.47208 * 59.99899 * 13 12 2 29 29 H 1.08999 * 109.46786 * 299.99678 * 13 12 2 30 30 H 0.96700 * 114.00311 * 60.00313 * 16 14 13 31 31 H 1.08001 * 125.89900 * 359.96736 * 18 17 14 32 32 H 1.09002 * 109.47127 * 89.97692 * 21 20 19 33 33 H 1.08998 * 109.47209 * 209.97282 * 21 20 19 34 34 H 1.09000 * 109.47223 * 329.97336 * 21 20 19 35 35 H 1.08003 * 126.13108 * 180.23626 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.8281 -2.5202 -4.0080 10 1 1.8280 -0.4197 -5.2203 11 1 3.8077 -1.1193 -4.0075 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5949 -0.5330 3.5746 15 1 1.9690 -1.4079 3.7502 16 8 3.9432 -0.9494 3.3489 17 6 2.5435 0.3714 4.7788 18 6 3.4782 1.3588 5.1070 19 7 3.0941 1.9319 6.2188 20 7 1.9014 1.3258 6.6342 21 6 1.1335 1.6673 7.8341 22 6 1.5821 0.3752 5.7311 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7096 1.1615 -3.4845 27 1 1.4495 -1.4978 1.4102 28 1 1.0870 0.6164 2.5525 29 1 2.7589 1.0462 2.1182 30 1 4.5577 -0.2210 3.1851 31 1 4.3640 1.6056 4.5406 32 1 0.4052 2.4411 7.5914 33 1 0.6141 0.7807 8.1976 34 1 1.8099 2.0342 8.6061 35 1 0.7157 -0.2688 5.7637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308861279.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:15 Heat of formation + Delta-G solvation = 3.878179 kcal Electronic energy + Delta-G solvation = -16804.075301 eV Core-core repulsion = 14030.907781 eV Total energy + Delta-G solvation = -2773.167520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19053 -38.71828 -36.98327 -34.36333 -34.04156 -32.11885 -30.54659 -28.26919 -27.22001 -26.51300 -23.52632 -22.23256 -21.90056 -21.16678 -18.50264 -18.26712 -16.93812 -16.64128 -16.29109 -16.19530 -15.56681 -15.43006 -15.12858 -14.46305 -14.38059 -13.70100 -13.61592 -13.49360 -13.34047 -13.12352 -12.81874 -12.66012 -12.33998 -12.31967 -12.11094 -11.93699 -11.57817 -11.14465 -10.77108 -10.45367 -10.37820 -9.35589 -8.86074 -8.06503 -6.17574 0.91989 1.45723 1.47729 1.55403 1.68883 1.75920 2.47245 3.21623 3.49270 3.65595 3.95004 3.98588 4.19760 4.33577 4.43052 4.43835 4.46711 4.68955 4.72589 4.74001 4.85099 4.90485 4.97165 5.13330 5.33398 5.44867 5.62762 5.72522 5.85126 6.11891 6.30975 6.68392 6.69485 6.85672 6.96520 7.04235 7.52646 8.98700 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004543 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.619301 B = 6161.745429 C = 6417.403153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.002 1.002 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.043 3.957 14 C 0.206 3.794 15 H 0.103 0.897 16 O -0.560 6.560 17 C -0.283 4.283 18 C 0.049 3.951 19 N -0.333 5.333 20 N -0.380 5.380 21 C 0.092 3.908 22 C 0.070 3.930 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.380 0.620 31 H 0.194 0.806 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -0.160 18.969 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.309 5.309 13 C -0.087 4.087 14 C 0.145 3.855 15 H 0.121 0.879 16 O -0.366 6.366 17 C -0.295 4.295 18 C -0.136 4.136 19 N -0.155 5.155 20 N -0.162 5.162 21 C -0.047 4.047 22 C -0.077 4.077 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.211 0.789 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.618 0.397 19.796 19.809 hybrid contribution -0.744 0.084 -1.515 1.690 sum -1.362 0.481 18.281 18.338 Atomic orbital electron populations 1.22230 1.00008 0.99303 0.99953 1.18937 0.90025 0.92563 0.87845 0.98387 1.21458 1.30303 1.12452 0.91112 0.92729 1.25721 0.95489 0.95887 1.01896 1.70010 1.38192 1.24319 1.23965 0.85576 0.78648 0.78709 0.78448 1.19578 1.21049 1.19959 1.60587 1.57806 1.09283 1.03231 1.22589 0.98872 0.95715 0.91499 1.19831 0.83938 0.94437 0.87289 0.87891 1.86535 1.18500 1.37932 1.93588 1.20869 1.00057 1.05964 1.02608 1.23968 1.00579 0.94593 0.94446 1.77269 0.99767 1.22399 1.16072 1.48853 1.18653 1.27589 1.21145 1.22210 0.95319 1.04103 0.83102 1.22814 1.00691 0.94312 0.89924 0.92153 0.94727 0.95668 0.93077 0.85161 0.95841 0.92781 0.77150 0.78905 0.89805 0.86517 0.89039 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.94 71.98 0.64 -6.86 16 2 C 0.21 11.03 2.57 44.17 0.11 11.14 16 3 H 0.00 -0.10 7.80 -2.39 -0.02 -0.12 16 4 C -0.51 -29.10 8.84 25.60 0.23 -28.87 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.68 -28.73 6.18 -495.43 -3.06 -31.79 16 13 C 0.04 1.51 5.10 86.30 0.44 1.95 16 14 C 0.21 5.78 3.59 29.85 0.11 5.89 16 15 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 16 O -0.56 -17.07 13.21 -148.98 -1.97 -19.03 16 17 C -0.28 -7.11 5.11 -20.15 -0.10 -7.21 16 18 C 0.05 1.27 11.44 85.23 0.98 2.25 16 19 N -0.33 -8.97 12.58 -57.02 -0.72 -9.68 16 20 N -0.38 -8.01 4.01 -369.57 -1.48 -9.49 16 21 C 0.09 1.01 11.47 127.77 1.47 2.48 16 22 C 0.07 1.44 11.40 83.54 0.95 2.39 16 23 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 24 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 25 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 27 H 0.33 13.14 8.47 -89.69 -0.76 12.38 16 28 H 0.02 0.82 7.44 -2.38 -0.02 0.80 16 29 H 0.05 1.99 8.05 -2.39 -0.02 1.97 16 30 H 0.38 9.56 8.36 -74.06 -0.62 8.94 16 31 H 0.19 4.12 7.76 -2.91 -0.02 4.10 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -70.33 298.21 0.03 -70.31 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.28 Total: 22.80 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 5.27 Total: -15.95 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.02 Total: -104.71 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.97 Total: -19.03 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.33 0.03 -70.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308861279.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.184 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds