Wall clock time and date at job start Mon Mar 30 2020 21:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 N 1.29953 * 126.28790 * 269.69060 * 3 2 1 5 5 O 1.21301 * 110.24977 * 179.84421 * 4 3 2 6 6 C 1.33645 * 109.81216 * 0.42476 * 5 4 3 7 7 C 1.50694 * 126.54963 * 179.72121 * 6 5 4 8 8 H 1.09004 * 109.47288 * 195.02119 * 7 6 5 9 9 C 1.52994 * 109.47505 * 75.02263 * 7 6 5 10 10 N 1.46901 * 109.47028 * 315.01901 * 7 6 5 11 11 C 1.46900 * 110.99866 * 205.00323 * 10 7 6 12 12 C 1.53001 * 109.47027 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47474 * 179.97438 * 12 11 10 14 14 H 1.08010 * 119.99659 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00394 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99726 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99906 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47428 * 60.00261 * 17 15 13 19 19 H 1.48500 * 109.46977 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47037 * 299.99933 * 17 15 13 21 21 N 1.31137 * 106.89670 * 359.73510 * 6 5 4 22 22 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 23 23 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 26 26 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 27 27 H 1.09001 * 109.47529 * 59.99548 * 9 7 6 28 28 H 1.08997 * 109.47436 * 180.02562 * 9 7 6 29 29 H 1.09007 * 109.47068 * 299.99802 * 9 7 6 30 30 H 1.00904 * 111.00250 * 328.95762 * 10 7 6 31 31 H 1.08999 * 109.47226 * 299.99743 * 11 10 7 32 32 H 1.08997 * 109.47283 * 59.99961 * 11 10 7 33 33 H 1.08995 * 109.47348 * 300.00443 * 12 11 10 34 34 H 1.09004 * 109.47265 * 60.00247 * 12 11 10 35 35 H 0.96995 * 119.99643 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2940 2.1441 -1.0475 5 8 2.6779 3.2449 -0.7124 6 6 2.7070 3.3279 0.6212 7 6 3.1299 4.5223 1.4369 8 1 3.3034 4.2150 2.4683 9 6 2.0270 5.5820 1.3993 10 7 4.3674 5.0834 0.8785 11 6 5.1230 5.8155 1.9037 12 6 6.4018 6.3844 1.2856 13 6 7.1767 7.1361 2.3371 14 1 6.7954 7.2011 3.3455 15 6 8.3729 7.7398 2.0121 16 7 8.8374 7.6601 0.7843 17 14 9.3337 8.6709 3.3157 18 1 9.6873 7.7477 4.4238 19 1 10.5748 9.2231 2.7158 20 1 8.5025 9.7825 3.8436 21 7 2.2976 2.1713 1.0841 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.1088 5.1657 1.8137 28 1 2.3331 6.4461 1.9890 29 1 1.8536 5.8894 0.3680 30 1 4.9340 4.3620 0.4579 31 1 4.5130 6.6315 2.2911 32 1 5.3824 5.1379 2.7170 33 1 7.0119 5.5688 0.8977 34 1 6.1420 7.0622 0.4724 35 1 9.6787 8.0852 0.5556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309052898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:50 Heat of formation + Delta-G solvation = 28.097181 kcal Electronic energy + Delta-G solvation = -16553.736581 eV Core-core repulsion = 13781.619275 eV Total energy + Delta-G solvation = -2772.117305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.69507 -38.53388 -37.41552 -35.57546 -34.47373 -32.99612 -31.68491 -29.78292 -26.56694 -26.08769 -25.20039 -23.65233 -22.43971 -21.39427 -19.20966 -18.62854 -18.34778 -17.24440 -16.49654 -16.39723 -15.81218 -15.45708 -15.08308 -14.57564 -14.15754 -14.07016 -13.89410 -13.64059 -13.06660 -13.02483 -12.87557 -12.71426 -12.59423 -12.47874 -12.37228 -12.30499 -12.01816 -11.83584 -11.43656 -11.30283 -11.00264 -10.53467 -9.52004 -8.17721 -6.28979 -0.01092 1.08620 1.43535 1.46343 1.54068 1.67614 2.36598 2.46177 2.91335 3.16476 3.27201 3.71271 4.06297 4.11014 4.19872 4.21652 4.34084 4.52216 4.58061 4.70019 4.79954 4.82104 4.88351 4.91248 4.99972 5.06754 5.22326 5.29040 5.46531 5.66385 5.76171 6.02208 6.14752 6.32120 6.88761 7.04601 7.40499 8.94285 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.053822 B = 0.003906 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.106498 B = 7166.334664 C = 7290.155685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 C 0.168 3.832 4 N -0.407 5.407 5 O 0.074 5.926 6 C 0.192 3.808 7 C 0.180 3.820 8 H 0.098 0.902 9 C -0.136 4.136 10 N -0.685 5.685 11 C 0.084 3.916 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.265 1.265 21 N -0.495 5.495 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.340 0.660 31 H 0.078 0.922 32 H 0.030 0.970 33 H -0.012 1.012 34 H -0.002 1.002 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -12.267 1.498 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.105 4.105 4 N -0.118 5.118 5 O 0.019 5.981 6 C -0.029 4.029 7 C 0.068 3.932 8 H 0.116 0.884 9 C -0.194 4.194 10 N -0.318 5.318 11 C -0.044 4.044 12 C -0.008 4.008 13 C -0.581 4.581 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.190 1.190 21 N -0.229 5.229 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.116 0.884 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.007 0.993 34 H 0.017 0.983 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.714 -12.238 0.633 20.725 hybrid contribution 1.349 0.025 0.688 1.515 sum -15.365 -12.213 1.321 19.672 Atomic orbital electron populations 1.21712 0.92069 1.04227 1.01888 1.20196 0.97736 0.83432 1.05904 1.26665 0.99210 1.01732 0.82934 1.74650 1.18959 0.93293 1.24878 1.85328 1.60779 1.26923 1.25023 1.29154 0.95062 0.96539 0.82109 1.20294 0.92775 0.86119 0.93989 0.88401 1.21851 0.95961 0.97743 1.03858 1.60756 1.06986 1.30574 1.33507 1.21941 0.94341 0.96624 0.91526 1.18925 0.91651 0.94642 0.95543 1.21599 1.05960 1.33453 0.97105 0.91593 1.25974 0.98820 0.97454 0.97586 1.70106 1.21324 1.45541 1.20352 0.85489 0.77642 0.78998 0.78842 1.19157 1.21210 1.18955 1.71922 1.19054 1.01954 1.30003 0.92671 0.93195 0.88412 0.87312 0.87871 0.90281 0.89752 0.91642 0.84249 0.90397 0.95229 0.99316 0.98336 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.03 -0.57 6.56 29.85 0.20 -0.38 16 3 C 0.17 4.37 7.47 138.46 1.03 5.40 16 4 N -0.41 -12.19 12.16 -60.29 -0.73 -12.92 16 5 O 0.07 2.29 11.31 74.81 0.85 3.13 16 6 C 0.19 5.46 7.00 88.38 0.62 6.08 16 7 C 0.18 4.78 3.16 44.16 0.14 4.92 16 8 H 0.10 2.45 7.80 -2.38 -0.02 2.43 16 9 C -0.14 -3.06 9.40 71.98 0.68 -2.38 16 10 N -0.69 -22.83 6.30 -495.46 -3.12 -25.95 16 11 C 0.08 3.22 5.42 86.30 0.47 3.69 16 12 C 0.03 1.54 5.23 29.85 0.16 1.69 16 13 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 17 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 N -0.49 -13.88 11.55 -303.17 -3.50 -17.39 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.85 7.45 -2.39 -0.02 1.84 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.34 11.67 8.35 -89.69 -0.75 10.93 16 31 H 0.08 2.84 7.44 -2.39 -0.02 2.82 16 32 H 0.03 1.10 8.05 -2.39 -0.02 1.08 16 33 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -65.48 302.59 0.83 -64.65 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.33 Total: 10.80 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.70 Total: -11.51 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -7.07 Total: -112.62 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.85 Total: 3.13 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -65.48 0.83 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309052898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.750 kcal (2) G-P(sol) polarization free energy of solvation -65.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds