Wall clock time and date at job start Mon Mar 30 2020 20:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 N 1.33315 * 126.54870 * 74.68840 * 4 2 1 6 6 N 1.29008 * 107.35431 * 179.83630 * 5 4 2 7 7 N 1.28779 * 108.72242 * 0.43189 * 6 5 4 8 8 H 0.97001 * 125.44878 * 179.72857 * 7 6 5 9 9 N 1.28880 * 109.10276 * 359.72394 * 7 6 5 10 10 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 11 11 C 1.46893 * 111.00136 * 306.04405 * 10 2 1 12 12 C 1.46901 * 110.99853 * 70.00100 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46678 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47258 * 119.99423 * 19 17 15 22 22 H 1.48493 * 109.47346 * 240.00028 * 19 17 15 23 23 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 25 25 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 26 26 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 27 27 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 28 28 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 29 29 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 30 30 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 31 31 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 33 33 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 34 34 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 35 35 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.0304 -2.0263 1.4438 6 7 2.5453 -2.2279 2.6093 7 7 2.8560 -1.0902 3.1264 8 1 3.2568 -0.9599 4.0001 9 7 2.5494 -0.1523 2.2973 10 7 2.0197 -0.6925 -1.1995 11 6 1.4344 -2.0355 -1.3078 12 6 1.7529 0.0972 -2.4091 13 6 2.4885 -0.5257 -3.5973 14 6 2.2111 0.2972 -4.8570 15 6 2.9361 -0.3159 -6.0273 16 1 3.5351 -1.2036 -5.8865 17 6 2.8347 0.2562 -7.2776 18 7 2.1048 1.3367 -7.4491 19 14 3.7327 -0.5043 -8.7284 20 1 4.4787 -1.7054 -8.2743 21 1 2.7488 -0.8963 -9.7693 22 1 4.6849 0.4845 -9.2946 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8665 -2.5521 -2.1648 27 1 1.6467 -2.5987 -0.3992 28 1 0.3556 -1.9520 -1.4399 29 1 2.1025 1.1189 -2.2604 30 1 0.6814 0.1053 -2.6087 31 1 3.5600 -0.5337 -3.3977 32 1 2.1389 -1.5473 -3.7459 33 1 1.1397 0.3056 -5.0569 34 1 2.5610 1.3187 -4.7081 35 1 2.0332 1.7390 -8.3288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686005596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:06 Heat of formation + Delta-G solvation = 122.353701 kcal Electronic energy + Delta-G solvation = -16855.766295 eV Core-core repulsion = 14120.029010 eV Total energy + Delta-G solvation = -2735.737285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.55909 -38.42705 -34.52097 -33.98484 -33.03847 -31.47842 -29.73446 -27.09879 -25.82168 -24.68649 -24.31911 -22.33936 -20.59576 -19.73090 -18.88859 -17.18715 -16.32738 -15.61572 -15.39364 -14.94522 -14.38696 -14.01255 -13.70277 -13.38096 -12.60721 -12.28330 -12.26666 -12.08671 -11.66091 -11.58683 -11.37540 -11.24242 -11.16814 -10.79213 -10.61499 -10.51434 -10.48926 -10.38563 -9.55011 -9.29270 -9.00573 -8.30132 -8.06638 -5.95643 -3.97087 1.03292 2.01184 2.19217 3.34608 3.41965 3.46835 3.65980 4.09257 4.44491 4.52001 4.98946 5.05435 5.31646 5.40480 5.46569 5.55764 5.61272 5.69856 5.83493 5.90910 6.04113 6.18775 6.29923 6.35005 6.52473 6.75207 6.82368 7.15262 7.32469 7.40408 7.73944 7.88790 8.05455 8.15155 8.49214 9.10414 9.66813 11.15892 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.004107 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.693930 B = 6815.900901 C = 7014.162336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.173 3.827 3 H 0.110 0.890 4 C 0.200 3.800 5 N -0.266 5.266 6 N -0.059 5.059 7 N -0.234 5.234 8 H 0.472 0.528 9 N -0.302 5.302 10 N -0.532 5.532 11 C 0.003 3.997 12 C 0.057 3.943 13 C -0.104 4.104 14 C 0.021 3.979 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -2.826 20.567 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.061 3.939 3 H 0.128 0.872 4 C -0.084 4.084 5 N -0.138 5.138 6 N -0.054 5.054 7 N -0.080 5.080 8 H 0.325 0.675 9 N -0.153 5.153 10 N -0.256 5.256 11 C -0.145 4.145 12 C -0.070 4.070 13 C -0.142 4.142 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.308 -3.273 20.816 21.112 hybrid contribution -0.189 0.254 -0.639 0.713 sum -1.496 -3.019 20.176 20.456 Atomic orbital electron populations 1.22457 0.95160 1.03463 1.03173 1.19919 0.93157 0.96806 0.84015 0.87224 1.25583 0.98515 0.88389 0.95886 1.75789 1.16433 1.15595 1.06028 1.78964 1.11884 1.09982 1.04601 1.47747 1.40831 1.01646 1.17736 0.67462 1.74683 1.18864 1.19385 1.02378 1.62180 1.58318 1.03603 1.01468 1.22825 0.97048 0.90318 1.04327 1.22361 0.98783 0.97034 0.88835 1.21654 0.99343 0.99465 0.93785 1.19082 0.96857 0.95088 0.90593 1.21300 1.29335 1.11584 0.93238 0.92628 1.25023 0.95540 0.95034 0.98939 1.69980 1.40160 1.20619 1.22910 0.86553 0.79598 0.79299 0.82670 1.19725 1.21076 1.21069 0.91236 0.92043 0.90433 0.90823 0.88903 0.95454 0.91100 0.94653 0.92640 0.93218 0.96753 0.96592 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.42 37.16 0.31 -1.73 16 2 C 0.17 2.23 2.86 -68.86 -0.20 2.04 16 3 H 0.11 1.33 7.93 -51.93 -0.41 0.92 16 4 C 0.20 2.61 7.09 -156.63 -1.11 1.50 16 5 N -0.27 -3.63 9.65 32.44 0.31 -3.31 16 6 N -0.06 -0.69 13.48 60.35 0.81 0.13 16 7 N -0.23 -2.07 7.91 60.34 0.48 -1.59 16 8 H 0.47 1.80 8.96 -340.52 -3.05 -1.25 16 9 N -0.30 -3.45 12.36 32.46 0.40 -3.05 16 10 N -0.53 -8.15 4.70 -236.28 -1.11 -9.26 16 11 C 0.00 0.04 8.44 60.06 0.51 0.55 16 12 C 0.06 0.96 4.53 -3.82 -0.02 0.95 16 13 C -0.10 -2.18 5.08 -26.73 -0.14 -2.32 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.07 0.81 6.42 -51.93 -0.33 0.47 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.87 6.91 -51.93 -0.36 0.51 16 26 H 0.07 1.15 6.47 -51.93 -0.34 0.82 16 27 H 0.09 1.35 5.06 -51.93 -0.26 1.09 16 28 H 0.03 0.38 6.46 -51.93 -0.34 0.04 16 29 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.04 0.59 7.06 -51.93 -0.37 0.22 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.03 6.55 -51.93 -0.34 0.69 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -32.63 286.59 -7.70 -40.33 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -7.44 Total: -5.83 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.19 Total: -12.22 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.63 Total: -43.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.63 -7.70 -40.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686005596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.686 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds