Wall clock time and date at job start Mon Mar 30 2020 20:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 N 1.33315 * 126.54870 * 74.68840 * 4 2 1 6 6 N 1.29008 * 107.35431 * 179.83630 * 5 4 2 7 7 N 1.28779 * 108.72242 * 0.43189 * 6 5 4 8 8 H 0.97001 * 125.44878 * 179.72857 * 7 6 5 9 9 N 1.28880 * 109.10276 * 359.72394 * 7 6 5 10 10 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 11 11 C 1.46893 * 111.00136 * 306.04405 * 10 2 1 12 12 C 1.46901 * 110.99853 * 70.00100 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46678 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47258 * 119.99423 * 19 17 15 22 22 H 1.48493 * 109.47346 * 240.00028 * 19 17 15 23 23 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 25 25 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 26 26 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 27 27 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 28 28 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 29 29 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 30 30 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 31 31 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 32 32 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 33 33 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 34 34 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 35 35 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.0304 -2.0263 1.4438 6 7 2.5453 -2.2279 2.6093 7 7 2.8560 -1.0902 3.1264 8 1 3.2568 -0.9599 4.0001 9 7 2.5494 -0.1523 2.2973 10 7 2.0197 -0.6925 -1.1995 11 6 1.4344 -2.0355 -1.3078 12 6 1.7529 0.0972 -2.4091 13 6 2.4885 -0.5257 -3.5973 14 6 2.2111 0.2972 -4.8570 15 6 2.9361 -0.3159 -6.0273 16 1 3.5351 -1.2036 -5.8865 17 6 2.8347 0.2562 -7.2776 18 7 2.1048 1.3367 -7.4491 19 14 3.7327 -0.5043 -8.7284 20 1 4.4787 -1.7054 -8.2743 21 1 2.7488 -0.8963 -9.7693 22 1 4.6849 0.4845 -9.2946 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8665 -2.5521 -2.1648 27 1 1.6467 -2.5987 -0.3992 28 1 0.3556 -1.9520 -1.4399 29 1 2.1025 1.1189 -2.2604 30 1 0.6814 0.1053 -2.6087 31 1 3.5600 -0.5337 -3.3977 32 1 2.1389 -1.5473 -3.7459 33 1 1.1397 0.3056 -5.0569 34 1 2.5610 1.3187 -4.7081 35 1 2.0332 1.7390 -8.3288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686005596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:05 Heat of formation + Delta-G solvation = 98.572695 kcal Electronic energy + Delta-G solvation = -16856.797516 eV Core-core repulsion = 14120.029010 eV Total energy + Delta-G solvation = -2736.768507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.45251 -39.59987 -36.05492 -35.11398 -34.45499 -33.08862 -30.96036 -28.70108 -27.08017 -25.89837 -25.39109 -23.89889 -21.94292 -21.15082 -19.79260 -18.43750 -18.07467 -16.87293 -16.58847 -16.33326 -16.24209 -15.11617 -14.96033 -14.62332 -14.24749 -13.70063 -13.61585 -13.39417 -12.98935 -12.91172 -12.65712 -12.60359 -12.39728 -12.30380 -12.27070 -12.06705 -11.66335 -11.47341 -11.31817 -11.28072 -11.02618 -10.51334 -9.25839 -8.17154 -6.27099 0.16375 1.04049 1.41713 1.42058 1.51768 1.55537 2.43337 2.68415 3.04416 3.16184 3.45009 4.02856 4.07980 4.23441 4.40808 4.40942 4.54365 4.59569 4.69232 4.71497 4.82601 4.93837 5.03839 5.15552 5.22251 5.25801 5.41212 5.57670 5.69462 5.80340 5.91159 6.08536 6.11497 6.32341 6.89850 7.24533 7.41764 8.94821 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.004107 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.693930 B = 6815.900901 C = 7014.162336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.173 3.827 3 H 0.117 0.883 4 C 0.187 3.813 5 N -0.291 5.291 6 N -0.065 5.065 7 N -0.205 5.205 8 H 0.492 0.508 9 N -0.301 5.301 10 N -0.541 5.541 11 C 0.007 3.993 12 C 0.069 3.931 13 C -0.090 4.090 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.056 0.944 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.049 0.951 33 H -0.006 1.006 34 H -0.005 1.005 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -3.198 21.475 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.061 3.939 3 H 0.135 0.865 4 C -0.096 4.096 5 N -0.163 5.163 6 N -0.060 5.060 7 N -0.056 5.056 8 H 0.350 0.650 9 N -0.154 5.154 10 N -0.265 5.265 11 C -0.141 4.141 12 C -0.058 4.058 13 C -0.128 4.128 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.925 -3.659 21.762 22.087 hybrid contribution -0.282 0.394 -0.807 0.941 sum -1.207 -3.265 20.955 21.242 Atomic orbital electron populations 1.22390 0.93826 1.03398 1.03935 1.19958 0.94234 0.96792 0.82886 0.86477 1.25546 0.99319 0.88397 0.96356 1.75749 1.17537 1.16069 1.06969 1.78905 1.12124 1.10633 1.04318 1.47800 1.39086 1.00606 1.18062 0.64967 1.74647 1.18638 1.19748 1.02324 1.62048 1.59132 1.03741 1.01575 1.22776 0.97399 0.90018 1.03893 1.22072 0.98349 0.97030 0.88335 1.21397 0.99329 0.98778 0.93329 1.18972 0.95092 0.94633 0.92455 1.21726 1.29748 1.11862 0.94579 0.92596 1.25936 0.96295 0.95445 1.02037 1.70096 1.41379 1.21910 1.23889 0.85436 0.78424 0.78634 0.78784 1.18857 1.20293 1.20340 0.91679 0.90399 0.90515 0.92217 0.88497 0.94643 0.90615 0.94218 0.93418 0.93246 0.98748 0.98675 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.42 71.98 0.61 -3.04 16 2 C 0.17 4.20 2.86 44.17 0.13 4.33 16 3 H 0.12 2.65 7.93 -2.39 -0.02 2.63 16 4 C 0.19 4.59 7.09 138.55 0.98 5.57 16 5 N -0.29 -7.55 9.65 -51.27 -0.49 -8.05 16 6 N -0.06 -1.40 13.48 37.02 0.50 -0.90 16 7 N -0.20 -3.16 7.91 37.00 0.29 -2.87 16 8 H 0.49 2.48 8.96 -347.67 -3.12 -0.63 16 9 N -0.30 -6.26 12.36 -51.21 -0.63 -6.89 16 10 N -0.54 -16.09 4.70 -901.46 -4.24 -20.33 16 11 C 0.01 0.21 8.44 127.69 1.08 1.29 16 12 C 0.07 2.33 4.53 86.30 0.39 2.72 16 13 C -0.09 -3.81 5.08 30.59 0.16 -3.65 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 16 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H 0.06 1.41 6.42 -2.39 -0.02 1.40 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.60 6.91 -2.39 -0.02 1.58 16 26 H 0.06 1.86 6.47 -2.39 -0.02 1.84 16 27 H 0.10 2.75 5.06 -2.39 -0.01 2.74 16 28 H 0.04 0.95 6.46 -2.38 -0.02 0.93 16 29 H 0.08 2.46 7.93 -2.39 -0.02 2.45 16 30 H 0.04 1.30 7.06 -2.39 -0.02 1.28 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.06 6.55 -2.39 -0.02 2.05 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -69.12 286.59 -0.09 -69.21 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.01 Total: 1.50 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 4.18 Total: -21.91 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -4.29 Total: -95.72 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.12 -0.09 -69.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686005596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.781 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds