Wall clock time and date at job start Mon Mar 30 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99588 * 2 1 4 4 H 1.48498 * 109.47062 * 265.05159 * 3 2 1 5 5 H 1.48507 * 109.46938 * 25.04771 * 3 2 1 6 6 H 1.48494 * 109.47314 * 145.04641 * 3 2 1 7 7 C 1.38809 * 120.00880 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00399 * 163.93055 * 7 2 1 9 9 N 1.36939 * 119.99208 * 343.93816 * 7 2 1 10 10 C 1.47078 * 120.86327 * 332.15529 * 9 7 2 11 11 C 1.53243 * 108.51975 * 231.12130 * 10 9 7 12 12 N 1.46903 * 109.36306 * 306.21251 * 11 10 9 13 13 C 1.46893 * 111.00236 * 187.23767 * 12 11 10 14 14 H 1.08998 * 110.43627 * 178.61317 * 13 12 11 15 15 C 1.54631 * 110.48706 * 301.15739 * 13 12 11 16 16 C 1.54692 * 101.67159 * 143.39271 * 15 13 12 17 17 N 1.46762 * 105.53075 * 334.74029 * 16 15 13 18 18 C 1.34410 * 111.30402 * 16.92316 * 17 16 15 19 19 O 1.21288 * 124.94683 * 179.62814 * 18 17 16 20 20 C 1.46905 * 111.26529 * 63.08876 * 12 11 10 21 21 C 1.47083 * 120.87830 * 152.13853 * 9 7 2 22 22 H 0.96993 * 120.00723 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.60889 * 111.43332 * 10 9 7 24 24 H 1.08996 * 109.65516 * 350.84469 * 10 9 7 25 25 H 1.09000 * 109.49742 * 186.24241 * 11 10 9 26 26 H 1.08998 * 109.49295 * 66.18258 * 11 10 9 27 27 H 1.08999 * 110.96701 * 261.59320 * 15 13 12 28 28 H 1.08997 * 110.96834 * 25.35127 * 15 13 12 29 29 H 1.08994 * 110.29250 * 215.67371 * 16 15 13 30 30 H 1.09000 * 110.13430 * 93.72068 * 16 15 13 31 31 H 0.97000 * 124.34693 * 196.89860 * 17 16 15 32 32 H 1.09000 * 109.49372 * 56.85955 * 20 12 11 33 33 H 1.09008 * 109.48875 * 176.91061 * 20 12 11 34 34 H 1.09001 * 109.62776 * 9.14185 * 21 9 7 35 35 H 1.08998 * 109.78861 * 248.65603 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6021 1.9862 -1.3948 5 1 1.3990 2.6807 0.5928 6 1 3.4913 1.4729 0.8021 7 6 2.0104 -1.2020 0.0005 8 1 3.0587 -1.2203 -0.2583 9 7 1.3658 -2.3646 0.3292 10 6 0.2040 -2.3543 1.2311 11 6 0.4382 -3.3873 2.3385 12 7 0.7432 -4.6903 1.7325 13 6 0.8053 -5.7443 2.7538 14 1 1.0077 -6.7105 2.2917 15 6 1.8855 -5.4122 3.8092 16 6 1.2253 -5.9335 5.1074 17 7 -0.2201 -5.8947 4.8562 18 6 -0.4849 -5.7943 3.5422 19 8 -1.5964 -5.7496 3.0589 20 6 1.9878 -4.6376 0.9539 21 6 1.8168 -3.6564 -0.2106 22 1 -0.4851 0.8399 0.0004 23 1 -0.6952 -2.6141 0.6723 24 1 0.0911 -1.3639 1.6721 25 1 -0.4587 -3.4726 2.9520 26 1 1.2755 -3.0705 2.9602 27 1 2.8128 -5.9454 3.5994 28 1 2.0592 -4.3376 3.8647 29 1 1.4798 -5.2867 5.9470 30 1 1.5462 -6.9559 5.3071 31 1 -0.8974 -5.9365 5.5493 32 1 2.8038 -4.3031 1.5946 33 1 2.2150 -5.6298 0.5637 34 1 2.7701 -3.5264 -0.7228 35 1 1.0754 -4.0433 -0.9096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687797023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:17 Heat of formation + Delta-G solvation = 7.782944 kcal Electronic energy + Delta-G solvation = -17968.508368 eV Core-core repulsion = 15195.510172 eV Total energy + Delta-G solvation = -2772.998197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53225 -37.60113 -36.11118 -34.19645 -31.48345 -30.02271 -29.59412 -27.52357 -25.29063 -22.99428 -22.69555 -21.83150 -19.91396 -18.79921 -17.34335 -16.60049 -16.47353 -15.27698 -14.70771 -14.30413 -14.14581 -13.96311 -13.71058 -13.39116 -13.07492 -12.88197 -12.73391 -12.33327 -11.72191 -11.43205 -11.22990 -11.02123 -10.72252 -10.48970 -10.27769 -10.09613 -9.79757 -9.60961 -9.53565 -9.10630 -8.47855 -7.80083 -6.62080 -5.74947 -3.17978 2.72890 3.34434 3.38868 3.45304 3.46957 4.18911 4.42858 4.51852 4.70033 4.87013 5.00064 5.38074 5.40782 5.44630 5.46674 5.71822 5.80926 5.89947 5.94324 6.15360 6.21867 6.37810 6.55367 6.72007 6.80239 6.96535 7.01587 7.25547 7.53313 7.66938 7.72839 7.83064 8.39361 8.46783 9.23878 9.87175 10.46758 11.33811 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.006589 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.440257 B = 4248.515573 C = 4319.941972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.181 3.819 11 C 0.033 3.967 12 N -0.509 5.509 13 C 0.052 3.948 14 H 0.111 0.889 15 C -0.174 4.174 16 C 0.107 3.893 17 N -0.740 5.740 18 C 0.526 3.474 19 O -0.512 6.512 20 C 0.045 3.955 21 C 0.148 3.852 22 H 0.254 0.746 23 H 0.029 0.971 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.408 0.592 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -11.810 10.269 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.055 3.945 11 C -0.095 4.095 12 N -0.233 5.233 13 C -0.061 4.061 14 H 0.129 0.871 15 C -0.214 4.214 16 C -0.018 4.018 17 N -0.397 5.397 18 C 0.311 3.689 19 O -0.385 6.385 20 C -0.084 4.084 21 C 0.021 3.979 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.246 0.754 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.861 -11.720 9.540 15.598 hybrid contribution 0.852 0.989 1.009 1.650 sum 4.713 -10.731 10.549 15.769 Atomic orbital electron populations 1.70023 1.05225 1.25529 1.53815 1.25074 0.95288 0.98377 1.00906 0.86331 0.78998 0.83683 0.77824 1.21282 1.21582 1.20668 1.19151 0.92183 0.84634 1.42405 0.91700 1.44114 1.34459 1.01622 1.51626 1.20818 0.89208 0.95922 0.88536 1.22987 0.98409 0.89434 0.98713 1.61993 1.34622 1.04753 1.21890 1.22505 0.92366 0.99060 0.92146 0.87088 1.23398 0.99504 1.03713 0.94753 1.21983 0.80103 1.01137 0.98556 1.46198 1.08571 1.76506 1.08453 1.20714 0.90766 0.74639 0.82763 1.90755 1.25691 1.48394 1.73659 1.22665 0.89204 0.99710 0.96807 1.20980 0.97947 0.86450 0.92506 0.93564 0.95316 0.89503 0.92283 0.95284 0.89336 0.89133 0.90585 0.91301 0.75410 0.94972 0.91833 0.92472 0.95536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 11.19 55.49 0.62 -26.15 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.78 29.58 -169.99 -5.03 16.76 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -7.05 9.62 -15.06 -0.14 -7.19 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -15.33 3.03 -172.01 -0.52 -15.85 16 10 C 0.18 4.58 5.40 -3.60 -0.02 4.56 16 11 C 0.03 0.69 4.95 -3.70 -0.02 0.67 16 12 N -0.51 -9.41 4.66 -226.35 -1.06 -10.47 16 13 C 0.05 0.76 3.06 -67.72 -0.21 0.55 16 14 H 0.11 1.44 8.13 -51.93 -0.42 1.01 16 15 C -0.17 -1.93 5.64 -24.98 -0.14 -2.07 16 16 C 0.11 0.94 7.79 -3.01 -0.02 0.91 16 17 N -0.74 -8.45 6.24 -59.09 -0.37 -8.82 16 18 C 0.53 8.37 6.40 -10.86 -0.07 8.30 16 19 O -0.51 -10.49 17.83 5.55 0.10 -10.39 16 20 C 0.05 0.79 5.29 -3.70 -0.02 0.77 16 21 C 0.15 3.18 6.69 -3.60 -0.02 3.15 16 22 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 25 H 0.06 1.23 6.63 -51.93 -0.34 0.88 16 26 H 0.03 0.58 6.25 -51.93 -0.32 0.26 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.19 5.83 -51.93 -0.30 0.89 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 3.91 8.96 -40.82 -0.37 3.54 16 32 H 0.03 0.55 7.56 -51.93 -0.39 0.16 16 33 H 0.06 0.94 8.10 -51.92 -0.42 0.52 16 34 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -33.21 276.16 -7.82 -41.02 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.97 Total: 0.10 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.75 Total: 9.64 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -1.33 Total: -61.29 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.21 -7.82 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.806 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds