Wall clock time and date at job start Mon Mar 30 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 119.99588 * 2 1 4 4 H 1.48498 * 109.47062 * 265.05159 * 3 2 1 5 5 H 1.48507 * 109.46938 * 25.04771 * 3 2 1 6 6 H 1.48494 * 109.47314 * 145.04641 * 3 2 1 7 7 C 1.38809 * 120.00880 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00399 * 163.93055 * 7 2 1 9 9 N 1.36939 * 119.99208 * 343.93816 * 7 2 1 10 10 C 1.47078 * 120.86327 * 332.15529 * 9 7 2 11 11 C 1.53243 * 108.51975 * 231.12130 * 10 9 7 12 12 N 1.46903 * 109.36306 * 306.21251 * 11 10 9 13 13 C 1.46893 * 111.00236 * 187.23767 * 12 11 10 14 14 H 1.08998 * 110.43627 * 178.61317 * 13 12 11 15 15 C 1.54631 * 110.48706 * 301.15739 * 13 12 11 16 16 C 1.54692 * 101.67159 * 143.39271 * 15 13 12 17 17 N 1.46762 * 105.53075 * 334.74029 * 16 15 13 18 18 C 1.34410 * 111.30402 * 16.92316 * 17 16 15 19 19 O 1.21288 * 124.94683 * 179.62814 * 18 17 16 20 20 C 1.46905 * 111.26529 * 63.08876 * 12 11 10 21 21 C 1.47083 * 120.87830 * 152.13853 * 9 7 2 22 22 H 0.96993 * 120.00723 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.60889 * 111.43332 * 10 9 7 24 24 H 1.08996 * 109.65516 * 350.84469 * 10 9 7 25 25 H 1.09000 * 109.49742 * 186.24241 * 11 10 9 26 26 H 1.08998 * 109.49295 * 66.18258 * 11 10 9 27 27 H 1.08999 * 110.96701 * 261.59320 * 15 13 12 28 28 H 1.08997 * 110.96834 * 25.35127 * 15 13 12 29 29 H 1.08994 * 110.29250 * 215.67371 * 16 15 13 30 30 H 1.09000 * 110.13430 * 93.72068 * 16 15 13 31 31 H 0.97000 * 124.34693 * 196.89860 * 17 16 15 32 32 H 1.09000 * 109.49372 * 56.85955 * 20 12 11 33 33 H 1.09008 * 109.48875 * 176.91061 * 20 12 11 34 34 H 1.09001 * 109.62776 * 9.14185 * 21 9 7 35 35 H 1.08998 * 109.78861 * 248.65603 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.6021 1.9862 -1.3948 5 1 1.3990 2.6807 0.5928 6 1 3.4913 1.4729 0.8021 7 6 2.0104 -1.2020 0.0005 8 1 3.0587 -1.2203 -0.2583 9 7 1.3658 -2.3646 0.3292 10 6 0.2040 -2.3543 1.2311 11 6 0.4382 -3.3873 2.3385 12 7 0.7432 -4.6903 1.7325 13 6 0.8053 -5.7443 2.7538 14 1 1.0077 -6.7105 2.2917 15 6 1.8855 -5.4122 3.8092 16 6 1.2253 -5.9335 5.1074 17 7 -0.2201 -5.8947 4.8562 18 6 -0.4849 -5.7943 3.5422 19 8 -1.5964 -5.7496 3.0589 20 6 1.9878 -4.6376 0.9539 21 6 1.8168 -3.6564 -0.2106 22 1 -0.4851 0.8399 0.0004 23 1 -0.6952 -2.6141 0.6723 24 1 0.0911 -1.3639 1.6721 25 1 -0.4587 -3.4726 2.9520 26 1 1.2755 -3.0705 2.9602 27 1 2.8128 -5.9454 3.5994 28 1 2.0592 -4.3376 3.8647 29 1 1.4798 -5.2867 5.9470 30 1 1.5462 -6.9559 5.3071 31 1 -0.8974 -5.9365 5.5493 32 1 2.8038 -4.3031 1.5946 33 1 2.2150 -5.6298 0.5637 34 1 2.7701 -3.5264 -0.7228 35 1 1.0754 -4.0433 -0.9096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687797023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:17 Heat of formation + Delta-G solvation = -19.414561 kcal Electronic energy + Delta-G solvation = -17969.687741 eV Core-core repulsion = 15195.510172 eV Total energy + Delta-G solvation = -2774.177569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69550 -39.17193 -37.35894 -35.88896 -33.33311 -31.71287 -30.89794 -28.86994 -26.94051 -24.64806 -24.36688 -22.97578 -21.20044 -20.42946 -18.69080 -18.28763 -17.63357 -16.80674 -16.45997 -15.69792 -15.53256 -15.43980 -15.20818 -14.82479 -14.76093 -14.34752 -14.07018 -13.45805 -13.19719 -13.00482 -12.84194 -12.59162 -12.33901 -12.24350 -12.07469 -11.84657 -11.67397 -11.42156 -10.87056 -10.58042 -10.05844 -9.21359 -8.67929 -7.87384 -5.34813 1.47086 1.48368 1.52938 1.58093 2.39872 2.51013 2.94211 3.28215 3.42472 3.65310 3.74266 3.96561 4.10045 4.28489 4.30761 4.43143 4.56164 4.65115 4.72073 4.76373 4.87130 4.98768 5.00885 5.15253 5.18176 5.34735 5.61039 5.63018 5.82826 6.00938 6.11972 6.23847 6.36688 7.11556 7.29513 7.82173 8.38480 9.19926 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.006589 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.440257 B = 4248.515573 C = 4319.941972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.055 4.055 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.191 3.809 11 C 0.059 3.941 12 N -0.533 5.533 13 C 0.049 3.951 14 H 0.134 0.866 15 C -0.165 4.165 16 C 0.108 3.892 17 N -0.725 5.725 18 C 0.514 3.486 19 O -0.573 6.573 20 C 0.059 3.941 21 C 0.140 3.860 22 H 0.249 0.751 23 H -0.015 1.015 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -13.335 11.911 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.250 4.250 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.092 0.908 9 N -0.336 5.336 10 C 0.064 3.936 11 C -0.071 4.071 12 N -0.257 5.257 13 C -0.062 4.062 14 H 0.152 0.848 15 C -0.204 4.204 16 C -0.016 4.016 17 N -0.381 5.381 18 C 0.300 3.700 19 O -0.452 6.452 20 C -0.070 4.070 21 C 0.014 3.986 22 H 0.058 0.942 23 H 0.003 0.997 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.256 0.744 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 6.703 -13.290 11.232 18.647 hybrid contribution -0.007 1.377 0.488 1.461 sum 6.696 -11.913 11.720 18.003 Atomic orbital electron populations 1.70218 1.07007 1.25916 1.55561 1.25931 0.96021 1.01908 1.01170 0.85223 0.77885 0.79027 0.77870 1.20869 1.22162 1.19139 1.19578 0.92743 0.85597 1.41430 0.90775 1.44384 1.34188 1.02809 1.52187 1.20489 0.87870 0.95845 0.89361 1.22480 0.98432 0.89673 0.96489 1.61799 1.35757 1.04282 1.23879 1.22619 0.93007 0.98401 0.92218 0.84830 1.23372 0.99718 1.02956 0.94338 1.22277 0.77620 1.03659 0.97994 1.46223 1.10490 1.74217 1.07175 1.21098 0.90417 0.74208 0.84296 1.90724 1.27862 1.51505 1.75064 1.22506 0.88969 1.00289 0.95196 1.21197 0.97665 0.85549 0.94174 0.94160 0.99731 0.92679 0.93173 0.94230 0.86076 0.91164 0.88360 0.87813 0.74368 0.93775 0.88055 0.91230 0.97401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 11.19 21.65 0.24 -57.94 16 2 C -0.06 -3.17 4.95 84.86 0.42 -2.75 16 3 Si 0.97 45.32 29.58 68.60 2.03 47.35 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.26 -14.73 9.62 84.03 0.81 -13.92 16 8 H 0.07 3.93 7.88 -2.91 -0.02 3.91 16 9 N -0.61 -32.09 3.03 -698.13 -2.12 -34.21 16 10 C 0.19 10.11 5.40 86.35 0.47 10.57 16 11 C 0.06 2.43 4.95 86.38 0.43 2.86 16 12 N -0.53 -19.09 4.66 -870.03 -4.06 -23.15 16 13 C 0.05 1.29 3.06 44.91 0.14 1.43 16 14 H 0.13 2.92 8.13 -2.39 -0.02 2.90 16 15 C -0.16 -2.92 5.64 31.73 0.18 -2.74 16 16 C 0.11 1.36 7.79 86.91 0.68 2.04 16 17 N -0.73 -14.62 6.24 -459.45 -2.87 -17.49 16 18 C 0.51 15.72 6.40 87.90 0.56 16.28 16 19 O -0.57 -23.95 17.83 -3.05 -0.05 -24.01 16 20 C 0.06 1.91 5.29 86.38 0.46 2.37 16 21 C 0.14 5.93 6.69 86.35 0.58 6.51 16 22 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 23 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 24 H 0.05 3.22 6.19 -2.39 -0.01 3.21 16 25 H 0.05 2.15 6.63 -2.39 -0.02 2.13 16 26 H 0.04 1.56 6.25 -2.39 -0.01 1.54 16 27 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.59 5.83 -2.39 -0.01 1.57 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.42 7.05 8.96 -92.71 -0.83 6.22 16 32 H 0.04 1.35 7.56 -2.39 -0.02 1.33 16 33 H 0.10 2.56 8.10 -2.38 -0.02 2.54 16 34 H 0.07 2.73 7.95 -2.39 -0.02 2.71 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -76.64 276.16 -1.85 -78.49 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.26 Total: 8.28 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 4.71 Total: 22.65 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -8.80 Total: -132.77 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.64 -1.85 -78.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687797023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.077 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds