Wall clock time and date at job start Mon Mar 30 2020 20:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00075 * 2 1 4 4 H 1.08999 * 115.56063 * 4.31372 * 3 2 1 5 5 C 1.52995 * 117.49849 * 218.61799 * 3 2 1 6 6 C 1.52989 * 60.00356 * 252.51610 * 5 3 2 7 7 H 1.09004 * 117.49787 * 252.49287 * 6 5 3 8 8 C 1.50692 * 117.50308 * 107.49259 * 6 5 3 9 9 O 1.21287 * 120.00205 * 291.39581 * 8 6 5 10 10 N 1.34781 * 120.00435 * 111.38874 * 8 6 5 11 11 C 1.47018 * 125.64282 * 0.02662 * 10 8 6 12 12 C 1.54330 * 107.26788 * 178.89461 * 11 10 8 13 13 C 1.55154 * 102.94062 * 337.80820 * 12 11 10 14 14 H 1.09003 * 111.00409 * 277.38521 * 13 12 11 15 15 C 1.50706 * 111.00112 * 153.57889 * 13 12 11 16 16 H 1.08000 * 119.99302 * 241.45313 * 15 13 12 17 17 C 1.37871 * 120.00436 * 61.17846 * 15 13 12 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 C 1.47426 * 125.64948 * 179.97438 * 10 8 6 24 24 H 1.09000 * 109.47242 * 60.00004 * 1 2 3 25 25 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47137 * 299.99888 * 1 2 3 27 27 H 1.09004 * 117.49600 * 145.01921 * 5 3 2 28 28 H 1.09001 * 117.50150 * 0.02562 * 5 3 2 29 29 H 1.09000 * 109.88337 * 59.47965 * 11 10 8 30 30 H 1.08998 * 109.88630 * 298.31088 * 11 10 8 31 31 H 1.09002 * 110.71870 * 219.44749 * 12 11 10 32 32 H 1.08998 * 110.71631 * 96.17292 * 12 11 10 33 33 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 34 34 H 1.09000 * 110.36680 * 85.33906 * 23 10 8 35 35 H 1.09002 * 110.36562 * 323.01126 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3058 2.1339 0.0740 5 6 3.2662 1.5195 -0.8470 6 6 3.3713 1.4726 0.6786 7 1 3.5626 2.4111 1.1989 8 6 3.9963 0.2482 1.2958 9 8 3.4213 -0.8184 1.2426 10 7 5.1943 0.3382 1.9068 11 6 5.9965 1.5626 2.0433 12 6 7.2685 1.1909 2.8343 13 6 6.8449 -0.0971 3.5885 14 1 6.2999 0.1457 4.5008 15 6 8.0401 -0.9637 3.8911 16 1 8.1022 -1.9605 3.4801 17 6 9.0569 -0.4819 4.6880 18 7 8.9839 0.7341 5.1836 19 14 10.5388 -1.5558 5.0625 20 1 11.2192 -1.9203 3.7940 21 1 11.4827 -0.8105 5.9336 22 1 10.0925 -2.7900 5.7574 23 6 5.9166 -0.7746 2.5498 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8901 27 1 3.3881 2.4888 -1.3304 28 1 3.6490 0.6647 -1.4046 29 1 5.4297 2.3185 2.5868 30 1 6.2697 1.9387 1.0574 31 1 7.5298 1.9814 3.5379 32 1 8.0977 0.9863 2.1571 33 1 9.6994 1.0732 5.7439 34 1 6.5062 -1.3202 1.8130 35 1 5.2155 -1.4446 3.0476 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689981008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:39 Heat of formation + Delta-G solvation = -68.378387 kcal Electronic energy + Delta-G solvation = -17157.365609 eV Core-core repulsion = 14348.772058 eV Total energy + Delta-G solvation = -2808.593551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.11384 -39.28754 -38.02004 -35.75576 -34.93287 -32.08139 -30.08809 -27.58968 -27.22697 -25.12069 -23.27726 -22.91602 -21.55004 -19.96982 -18.79701 -18.33699 -17.05693 -16.82098 -16.66033 -16.34621 -15.77738 -15.35618 -15.22572 -14.41415 -14.33302 -14.20895 -13.63614 -13.35976 -13.09431 -12.95833 -12.88805 -12.60381 -12.34881 -12.29367 -12.18142 -11.61874 -11.41334 -11.33290 -10.96277 -10.71981 -10.50902 -10.06030 -9.50274 -8.15775 -6.26156 1.44514 1.45165 1.52892 1.58486 2.10936 2.44651 2.72438 2.91256 3.15888 3.62668 3.84786 3.98872 4.09215 4.18084 4.35992 4.37646 4.50121 4.50886 4.60144 4.62133 4.75167 4.78766 4.83836 4.87439 5.02207 5.11153 5.27955 5.43189 5.58103 5.77984 5.86924 6.27083 6.38909 6.72762 6.79190 7.29265 7.41796 8.93184 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.056901 B = 0.004930 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.968548 B = 5678.457788 C = 5942.390780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.372 6.372 3 C 0.045 3.955 4 H 0.158 0.842 5 C -0.143 4.143 6 C -0.205 4.205 7 H 0.154 0.846 8 C 0.538 3.462 9 O -0.576 6.576 10 N -0.618 5.618 11 C 0.107 3.893 12 C -0.099 4.099 13 C 0.040 3.960 14 H 0.008 0.992 15 C -0.540 4.540 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.911 5.911 19 Si 0.956 3.044 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.275 1.275 23 C 0.119 3.881 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.050 0.950 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 7.447 -10.655 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.290 6.290 3 C -0.014 4.014 4 H 0.175 0.825 5 C -0.181 4.181 6 C -0.226 4.226 7 H 0.171 0.829 8 C 0.328 3.672 9 O -0.455 6.455 10 N -0.351 5.351 11 C -0.015 4.015 12 C -0.138 4.138 13 C 0.021 3.979 14 H 0.026 0.974 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.201 1.201 23 C -0.004 4.004 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.170 0.830 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.902 6.838 -10.610 17.349 hybrid contribution 0.903 -0.679 0.716 1.338 sum -10.999 6.159 -9.894 16.025 Atomic orbital electron populations 1.22987 0.79561 1.03392 1.01183 1.88136 1.21272 1.25793 1.93774 1.23063 0.89313 0.87680 1.01314 0.82530 1.23511 1.00092 1.05140 0.89338 1.22804 1.03358 0.97835 0.98643 0.82882 1.20069 0.79204 0.90154 0.77759 1.90684 1.62657 1.31740 1.60458 1.48795 1.19047 1.11910 1.55352 1.22224 0.92243 0.86127 1.00890 1.22367 0.94704 0.99177 0.97551 1.19725 0.92919 0.93508 0.91779 0.97351 1.21228 1.04497 1.00569 1.31488 0.92938 1.25646 1.00699 0.96269 0.95101 1.70032 1.34114 1.16944 1.33875 0.85645 0.79102 0.78822 0.78284 1.19577 1.20589 1.20050 1.22209 0.93456 0.89601 0.95111 0.91682 0.89817 0.93155 0.82996 0.89998 0.90396 0.89761 0.91291 0.93255 0.92693 0.93159 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.88 113.37 1.23 1.72 16 2 O -0.37 -11.14 8.84 -127.82 -1.13 -12.27 16 3 C 0.04 1.01 6.40 30.59 0.20 1.20 16 4 H 0.16 2.10 7.93 -2.39 -0.02 2.08 16 5 C -0.14 -2.93 10.18 30.59 0.31 -2.62 16 6 C -0.21 -5.36 5.54 -11.55 -0.06 -5.43 16 7 H 0.15 3.07 7.67 -2.38 -0.02 3.05 16 8 C 0.54 20.89 7.63 87.65 0.67 21.56 16 9 O -0.58 -27.17 15.18 18.11 0.27 -26.90 16 10 N -0.62 -24.80 3.33 -811.79 -2.70 -27.50 16 11 C 0.11 3.69 6.31 86.73 0.55 4.23 16 12 C -0.10 -4.37 5.64 31.78 0.18 -4.19 16 13 C 0.04 2.02 2.97 -10.15 -0.03 1.99 16 14 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 15 C -0.54 -29.72 8.55 25.60 0.22 -29.50 16 16 H 0.05 2.88 7.79 -2.91 -0.02 2.86 16 17 C 0.02 1.25 5.34 84.65 0.45 1.70 16 18 N -0.91 -50.75 12.11 21.45 0.26 -50.49 16 19 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.12 5.56 6.35 86.85 0.55 6.11 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.15 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.07 3.20 7.53 -2.39 -0.02 3.18 16 32 H 0.05 2.23 8.03 -2.39 -0.02 2.21 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.05 2.39 8.03 -2.39 -0.02 2.37 16 35 H 0.04 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -70.35 294.38 4.06 -66.29 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.06 Total: 9.16 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.26 Total: -3.22 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.44 Total: -78.00 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.85 Total: -39.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.35 4.06 -66.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689981008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.088 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds