Wall clock time and date at job start Mon Mar 30 2020 20:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47090 * 270.02448 * 6 5 4 8 8 N 1.46898 * 109.46787 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99541 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47238 * 34.99664 * 9 8 7 11 11 C 1.53001 * 109.47007 * 274.99912 * 9 8 7 12 12 C 1.52999 * 109.46985 * 155.00118 * 9 8 7 13 13 C 1.50701 * 109.47042 * 294.99698 * 12 9 8 14 14 H 1.08009 * 119.99907 * 359.97438 * 13 12 9 15 15 C 1.37873 * 120.00196 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99904 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47179 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47140 * 120.00101 * 17 15 13 20 20 H 1.48505 * 109.46900 * 239.99994 * 17 15 13 21 21 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 22 22 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 25 25 H 1.08997 * 109.46651 * 30.02836 * 6 5 4 26 26 H 1.09002 * 109.46970 * 150.02239 * 6 5 4 27 27 H 1.08999 * 109.46964 * 299.99820 * 7 6 5 28 28 H 1.08996 * 109.46828 * 59.99664 * 7 6 5 29 29 H 1.00900 * 110.99941 * 303.95038 * 8 7 6 30 30 H 1.08996 * 109.47080 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46919 * 299.99948 * 11 9 8 32 32 H 1.08995 * 109.46965 * 59.99691 * 11 9 8 33 33 H 1.09003 * 109.47210 * 54.99614 * 12 9 8 34 34 H 1.08994 * 109.47147 * 174.99938 * 12 9 8 35 35 H 0.96998 * 120.00155 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2262 -1.7124 -1.4423 8 7 6.4616 -2.5071 -1.4422 9 6 6.9050 -2.7909 -2.8138 10 1 6.6726 -1.9399 -3.4541 11 6 6.1827 -4.0344 -3.3361 12 6 8.4149 -3.0374 -2.8209 13 6 9.1322 -1.7729 -2.4237 14 1 8.5675 -0.8824 -2.1900 15 6 10.5093 -1.7526 -2.3597 16 7 11.1970 -2.8365 -2.6457 17 14 11.3983 -0.1854 -1.8666 18 1 10.4040 0.8843 -1.5983 19 1 12.1999 -0.4355 -0.6418 20 1 12.2980 0.2409 -2.9685 21 7 2.3030 -1.0840 0.0048 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5134 25 1 5.5841 -0.8856 0.5146 26 1 4.6205 -2.3822 0.5136 27 1 4.4390 -2.2637 -1.9565 28 1 5.4026 -0.7671 -1.9555 29 1 7.1884 -2.0457 -0.9158 30 1 6.5120 -4.2453 -4.3536 31 1 6.4151 -4.8854 -2.6958 32 1 5.1070 -3.8588 -3.3309 33 1 8.6570 -3.8301 -2.1130 34 1 8.7298 -3.3348 -3.8211 35 1 12.1658 -2.8221 -2.6011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817855.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:58 Heat of formation + Delta-G solvation = 26.179982 kcal Electronic energy + Delta-G solvation = -16586.396480 eV Core-core repulsion = 13814.196039 eV Total energy + Delta-G solvation = -2772.200441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.63667 -38.56237 -37.13861 -35.70742 -34.51094 -32.72795 -30.23246 -29.43895 -29.17925 -25.39686 -24.73883 -23.71761 -22.14571 -21.09783 -19.18946 -18.48341 -18.41729 -16.87024 -16.59878 -16.40631 -15.52324 -15.29029 -14.70076 -14.58734 -14.47610 -13.89340 -13.69326 -13.46940 -13.33768 -13.16503 -13.07097 -12.64488 -12.59440 -12.43479 -12.30718 -12.19622 -12.11715 -11.86535 -11.23995 -10.99057 -10.87578 -10.55039 -9.24344 -8.16335 -6.26694 0.05763 1.15690 1.42427 1.44381 1.55429 1.75774 2.43285 2.64440 3.05343 3.16332 3.47979 3.95113 4.02264 4.12494 4.34188 4.44630 4.53794 4.57098 4.64102 4.68785 4.75213 4.84089 4.92230 4.98027 5.07238 5.09914 5.24209 5.38157 5.52546 5.57044 5.87736 6.23457 6.33873 6.64772 6.89410 7.09781 7.42600 8.95431 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.004746 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.816431 B = 5897.711446 C = 6625.392485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.163 3.837 3 N -0.413 5.413 4 O 0.061 5.939 5 C 0.202 3.798 6 C -0.020 4.020 7 C 0.069 3.931 8 N -0.678 5.678 9 C 0.096 3.904 10 H 0.025 0.975 11 C -0.129 4.129 12 C 0.026 3.974 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.285 1.285 21 N -0.501 5.501 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.350 0.650 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.002 0.998 34 H -0.006 1.006 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 4.261 5.588 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.126 5.126 4 O 0.007 5.993 5 C -0.019 4.019 6 C -0.059 4.059 7 C -0.061 4.061 8 N -0.312 5.312 9 C -0.014 4.014 10 H 0.043 0.957 11 C -0.187 4.187 12 C -0.011 4.011 13 C -0.571 4.571 14 H 0.079 0.921 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.784 3.216 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.211 1.211 21 N -0.236 5.236 22 H 0.121 0.879 23 H 0.123 0.877 24 H 0.117 0.883 25 H 0.137 0.863 26 H 0.148 0.852 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.170 0.830 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.020 0.980 34 H 0.012 0.988 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.681 4.107 5.655 19.946 hybrid contribution 1.460 1.399 -0.286 2.042 sum -17.222 5.506 5.368 18.860 Atomic orbital electron populations 1.20362 0.80183 1.05867 1.05555 1.26722 1.02259 0.83029 0.98953 1.74631 0.89682 1.24899 1.23423 1.85278 1.22453 1.25408 1.66138 1.29099 0.97384 0.81773 0.93622 1.20281 0.87395 0.98936 0.99281 1.21826 0.93871 0.95956 0.94483 1.60542 1.06753 1.49474 1.14393 1.21430 0.95190 0.96343 0.88427 0.95656 1.21723 0.99593 0.97522 0.99886 1.19149 0.90666 0.95992 0.95292 1.21579 0.91907 0.97784 1.45821 0.92070 1.25869 0.98843 0.99237 0.95363 1.70099 1.07039 1.29825 1.50141 0.85491 0.78594 0.79770 0.77721 1.18488 1.20498 1.21121 1.71964 1.00158 1.29853 1.21651 0.87944 0.87726 0.88252 0.86286 0.85171 0.90682 0.95604 0.82967 0.93031 0.92836 0.92184 0.97993 0.98758 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.51 71.24 0.75 -0.11 16 2 C 0.16 3.89 8.22 138.47 1.14 5.03 16 3 N -0.41 -11.30 12.16 -60.32 -0.73 -12.03 16 4 O 0.06 1.66 11.31 74.86 0.85 2.51 16 5 C 0.20 5.02 7.77 88.38 0.69 5.71 16 6 C -0.02 -0.43 6.10 29.85 0.18 -0.25 16 7 C 0.07 1.89 5.47 86.30 0.47 2.36 16 8 N -0.68 -23.03 6.31 -491.57 -3.10 -26.13 16 9 C 0.10 3.75 2.59 44.91 0.12 3.87 16 10 H 0.03 1.02 7.80 -2.39 -0.02 1.00 16 11 C -0.13 -4.35 9.41 71.98 0.68 -3.67 16 12 C 0.03 1.32 4.57 29.85 0.14 1.46 16 13 C -0.53 -28.30 8.12 25.60 0.21 -28.10 16 14 H 0.06 3.08 7.49 -2.91 -0.02 3.06 16 15 C 0.01 0.28 5.46 84.65 0.46 0.74 16 16 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 17 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 N -0.50 -13.03 11.55 -303.19 -3.50 -16.54 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 28 H 0.03 0.74 8.05 -2.39 -0.02 0.73 16 29 H 0.35 12.76 7.21 -89.69 -0.65 12.11 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.74 7.45 -2.39 -0.02 1.72 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.08 300.71 1.08 -63.00 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.43 Total: 12.15 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.83 Total: -12.95 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -7.05 Total: -109.45 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.85 Total: 2.51 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.08 1.08 -63.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817855.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.176 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds