Wall clock time and date at job start Mon Mar 30 2020 21:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 126.28516 * 2 1 4 4 O 1.21303 * 110.24828 * 179.97438 * 3 2 1 5 5 C 1.33639 * 109.81167 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.55166 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47090 * 270.02448 * 6 5 4 8 8 N 1.46898 * 109.46787 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99541 * 180.02562 * 8 7 6 10 10 H 1.08996 * 109.47067 * 324.99477 * 9 8 7 11 11 C 1.53001 * 109.47150 * 84.99739 * 9 8 7 12 12 C 1.52998 * 109.46938 * 204.99929 * 9 8 7 13 13 C 1.50703 * 109.47484 * 64.99706 * 12 9 8 14 14 H 1.08002 * 119.99240 * 359.97438 * 13 12 9 15 15 C 1.37867 * 120.00259 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47058 * 90.00148 * 17 15 13 19 19 H 1.48502 * 109.47377 * 210.00424 * 17 15 13 20 20 H 1.48502 * 109.47217 * 329.99996 * 17 15 13 21 21 N 1.31134 * 106.89726 * 359.76539 * 5 4 3 22 22 H 1.09001 * 109.46953 * 90.02334 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.01931 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02562 * 1 2 3 25 25 H 1.08997 * 109.46651 * 30.02836 * 6 5 4 26 26 H 1.09002 * 109.46970 * 150.02239 * 6 5 4 27 27 H 1.08999 * 109.46964 * 299.99820 * 7 6 5 28 28 H 1.08996 * 109.46828 * 59.99664 * 7 6 5 29 29 H 1.00893 * 111.00097 * 56.04927 * 8 7 6 30 30 H 1.08990 * 109.47258 * 299.99801 * 11 9 8 31 31 H 1.09008 * 109.46799 * 60.00231 * 11 9 8 32 32 H 1.08996 * 109.46994 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.47330 * 184.99741 * 12 9 8 34 34 H 1.09006 * 109.47227 * 305.00323 * 12 9 8 35 35 H 0.97003 * 120.00380 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2262 -1.7124 -1.4423 8 7 6.4616 -2.5071 -1.4422 9 6 6.9050 -2.7909 -2.8138 10 1 6.0349 -2.9315 -3.4550 11 6 7.7376 -1.6173 -3.3337 12 6 7.7553 -4.0628 -2.8219 13 6 6.9018 -5.2403 -2.4271 14 1 5.8573 -5.0958 -2.1933 15 6 7.4542 -6.5019 -2.3644 16 7 8.7261 -6.6778 -2.6486 17 14 6.3960 -7.9617 -1.8756 18 1 5.7860 -8.5596 -3.0903 19 1 7.2379 -8.9771 -1.1933 20 1 5.3228 -7.5088 -0.9545 21 7 2.3030 -1.0840 0.0048 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5134 25 1 5.5841 -0.8856 0.5146 26 1 4.6205 -2.3822 0.5136 27 1 4.4390 -2.2637 -1.9565 28 1 5.4026 -0.7671 -1.9555 29 1 6.3429 -3.3600 -0.9165 30 1 7.1318 -0.7113 -3.3279 31 1 8.6077 -1.4768 -2.6923 32 1 8.0668 -1.8281 -4.3512 33 1 8.1574 -4.2246 -3.8220 34 1 8.5765 -3.9554 -2.1131 35 1 9.1149 -7.5654 -2.6041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:00 Heat of formation + Delta-G solvation = 26.110617 kcal Electronic energy + Delta-G solvation = -16593.737554 eV Core-core repulsion = 13821.534105 eV Total energy + Delta-G solvation = -2772.203449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.63839 -38.56040 -37.14460 -35.70895 -34.51643 -32.72864 -30.24825 -29.43917 -29.16978 -25.38953 -24.74709 -23.73455 -22.13093 -21.09737 -19.19119 -18.49759 -18.39702 -16.99623 -16.59027 -16.27390 -15.52830 -15.27003 -14.90269 -14.49447 -14.47300 -13.79909 -13.75814 -13.45780 -13.34170 -13.16287 -13.08203 -12.65711 -12.57383 -12.45595 -12.32082 -12.22406 -12.09280 -11.86028 -11.25129 -10.99698 -10.86926 -10.54977 -9.24989 -8.16826 -6.27221 0.05848 1.15181 1.42511 1.43329 1.53563 1.74700 2.42705 2.65486 3.04271 3.15629 3.47328 3.95427 3.99289 4.17201 4.33387 4.44631 4.55460 4.56960 4.62628 4.66131 4.75318 4.83889 4.93765 4.96141 5.07681 5.10302 5.24604 5.38670 5.52474 5.56718 5.87360 6.23040 6.33836 6.62759 6.88612 7.10201 7.42023 8.94682 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.004916 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.538374 B = 5693.897532 C = 6499.622196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.410 5.410 4 O 0.069 5.931 5 C 0.203 3.797 6 C -0.020 4.020 7 C 0.069 3.931 8 N -0.677 5.677 9 C 0.095 3.905 10 H 0.024 0.976 11 C -0.129 4.129 12 C 0.027 3.973 13 C -0.534 4.534 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.957 3.043 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.261 1.261 21 N -0.509 5.509 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.349 0.651 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.050 0.950 33 H -0.006 1.006 34 H 0.002 0.998 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.501 12.556 5.590 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.122 5.122 4 O 0.014 5.986 5 C -0.018 4.018 6 C -0.059 4.059 7 C -0.062 4.062 8 N -0.310 5.310 9 C -0.014 4.014 10 H 0.042 0.958 11 C -0.187 4.187 12 C -0.011 4.011 13 C -0.573 4.573 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.782 3.218 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.185 1.185 21 N -0.244 5.244 22 H 0.120 0.880 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.151 0.849 26 H 0.134 0.866 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.169 0.831 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.021 0.979 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.586 13.486 5.660 19.296 hybrid contribution -0.595 -1.746 -0.294 1.868 sum -13.181 11.740 5.367 18.449 Atomic orbital electron populations 1.20352 0.80374 1.05816 1.05494 1.26674 1.02215 0.83012 0.99193 1.74612 0.89724 1.24645 1.23257 1.85266 1.22283 1.25082 1.65972 1.29068 0.97193 0.81923 0.93602 1.20274 0.87497 0.98804 0.99288 1.21835 0.90916 0.98934 0.94474 1.60560 1.30513 1.25532 1.14406 1.21434 0.96391 0.95198 0.88406 0.95822 1.21723 0.99917 0.97185 0.99880 1.19147 0.94953 0.91678 0.95299 1.21539 0.96362 0.93317 1.46038 0.92316 1.25842 0.96001 1.01987 0.95320 1.70085 1.13487 1.23350 1.50090 0.85568 0.78784 0.78953 0.78461 1.20456 1.21006 1.18536 1.71984 1.00539 1.30147 1.21745 0.88039 0.88030 0.88048 0.84906 0.86579 0.96116 0.90135 0.83129 0.91955 0.92717 0.93089 0.98744 0.97919 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.51 71.24 0.75 -0.18 16 2 C 0.16 3.94 8.22 138.47 1.14 5.08 16 3 N -0.41 -10.92 12.16 -60.32 -0.73 -11.65 16 4 O 0.07 1.78 11.31 74.86 0.85 2.62 16 5 C 0.20 5.04 7.77 88.38 0.69 5.72 16 6 C -0.02 -0.43 6.10 29.85 0.18 -0.25 16 7 C 0.07 1.88 5.47 86.30 0.47 2.36 16 8 N -0.68 -23.00 6.31 -491.58 -3.10 -26.10 16 9 C 0.10 3.74 2.59 44.91 0.12 3.85 16 10 H 0.02 0.96 7.80 -2.39 -0.02 0.94 16 11 C -0.13 -4.28 9.41 71.98 0.68 -3.60 16 12 C 0.03 1.34 4.57 29.85 0.14 1.47 16 13 C -0.53 -28.64 8.12 25.60 0.21 -28.43 16 14 H 0.06 3.01 7.49 -2.91 -0.02 2.98 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -55.12 13.29 21.44 0.28 -54.84 16 17 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 N -0.51 -13.88 11.55 -303.19 -3.50 -17.39 16 22 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.13 2.35 8.14 -2.39 -0.02 2.34 16 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 28 H 0.08 2.05 7.43 -2.39 -0.02 2.04 16 29 H 0.35 12.94 7.21 -89.70 -0.65 12.29 16 30 H 0.06 1.75 7.45 -2.39 -0.02 1.73 16 31 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -64.30 300.71 1.08 -63.22 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.43 Total: 12.23 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.83 Total: -13.12 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -7.05 Total: -109.98 kcal Atomic # 8 Polarization: 1.78 SS G_CDS: 0.85 Total: 2.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -64.30 1.08 -63.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.331 kcal (2) G-P(sol) polarization free energy of solvation -64.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds