Wall clock time and date at job start Mon Mar 30 2020 21:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47333 * 120.00048 * 2 1 3 5 5 H 1.08996 * 109.50792 * 299.99911 * 4 2 1 6 6 C 1.53096 * 109.50874 * 179.91132 * 4 2 1 7 7 N 1.47017 * 109.25861 * 183.21654 * 6 4 2 8 8 C 1.47013 * 110.75209 * 58.61325 * 7 6 4 9 9 C 1.53097 * 109.26242 * 301.38565 * 8 7 6 10 10 O 1.43013 * 109.50628 * 60.08313 * 4 2 1 11 11 N 1.46501 * 109.47027 * 239.99839 * 2 1 3 12 12 C 1.36934 * 119.99871 * 120.00078 * 11 2 1 13 13 H 1.07999 * 120.00400 * 357.09594 * 12 11 2 14 14 C 1.38812 * 120.00212 * 177.10374 * 12 11 2 15 15 N 1.31621 * 119.99446 * 335.04480 * 14 12 11 16 16 Si 1.86794 * 120.00531 * 155.04452 * 14 12 11 17 17 H 1.48504 * 109.47260 * 84.99350 * 16 14 12 18 18 H 1.48497 * 109.47353 * 204.99437 * 16 14 12 19 19 H 1.48500 * 109.47172 * 324.99898 * 16 14 12 20 20 C 1.46496 * 119.99841 * 300.27947 * 11 2 1 21 21 C 1.47206 * 109.46945 * 263.21547 * 20 11 2 22 22 N 4.21873 * 119.18515 * 189.26503 * 2 1 3 23 23 H 1.09005 * 109.46900 * 300.00238 * 1 2 3 24 24 H 1.09000 * 109.47595 * 59.99763 * 1 2 3 25 25 H 1.08993 * 109.47784 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.50634 * 303.15199 * 6 4 2 27 27 H 1.08999 * 109.50502 * 63.24057 * 6 4 2 28 28 H 1.00901 * 111.00023 * 294.84171 * 7 6 4 29 29 H 1.09004 * 109.50059 * 61.32133 * 8 7 6 30 30 H 1.09001 * 109.50725 * 181.40502 * 8 7 6 31 31 H 1.08996 * 109.50842 * 176.78068 * 9 8 7 32 32 H 1.09000 * 109.50171 * 296.87013 * 9 8 7 33 33 H 0.97006 * 119.99934 * 180.02562 * 15 14 12 34 34 H 1.08991 * 109.47548 * 23.21655 * 20 11 2 35 35 H 1.09008 * 109.47152 * 143.22422 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6770 -0.2079 2.1396 6 6 3.5709 -0.7237 1.2489 7 7 4.0549 -1.4841 2.4103 8 6 3.5486 -2.8639 2.3772 9 6 2.0179 -2.8401 2.3662 10 8 1.5653 -2.0703 1.2490 11 7 2.0183 -0.6907 -1.1962 12 6 2.8055 -0.0252 -2.0975 13 1 3.0278 1.0215 -1.9511 14 6 3.3177 -0.6958 -3.1997 15 7 3.4856 -2.0005 -3.1566 16 14 3.7689 0.2533 -4.7440 17 1 5.1465 0.7914 -4.6097 18 1 3.7038 -0.6527 -5.9187 19 1 2.8152 1.3761 -4.9313 20 6 1.6593 -2.0914 -1.4310 21 6 2.7474 -2.9627 -0.9581 22 7 3.5871 -3.6351 -0.5930 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.9340 -1.1887 0.3324 27 1 3.9365 0.3016 1.3064 28 1 3.8014 -1.0266 3.2732 29 1 3.9114 -3.3632 1.4787 30 1 3.8985 -3.4013 3.2586 31 1 1.6386 -3.8586 2.2840 32 1 1.6543 -2.3897 3.2898 33 1 3.8439 -2.4692 -3.9266 34 1 0.7434 -2.3275 -0.8895 35 1 1.5025 -2.2524 -2.4977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699709851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:17 Heat of formation + Delta-G solvation = 24.361679 kcal Electronic energy + Delta-G solvation = -18779.228086 eV Core-core repulsion = 16006.948797 eV Total energy + Delta-G solvation = -2772.279289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39442 -36.40423 -34.37514 -33.87303 -32.57003 -30.19368 -29.00320 -26.96822 -25.66961 -23.62359 -22.95425 -20.88123 -19.54081 -17.56743 -16.11736 -15.96869 -15.44664 -15.12251 -14.52601 -14.48954 -14.12715 -13.66537 -13.22462 -12.49622 -12.37651 -12.26209 -11.70583 -11.64438 -11.29894 -11.12087 -10.96383 -10.80793 -10.74951 -10.64622 -10.44531 -10.38104 -10.05272 -9.74264 -9.59299 -9.47426 -8.58499 -7.77004 -7.19972 -5.91679 -3.21483 3.36048 3.44807 3.45931 4.13187 4.36378 4.59293 4.64237 4.81977 5.22477 5.24624 5.35254 5.42923 5.48574 5.66583 5.72566 5.79444 5.95106 5.96476 6.03394 6.17042 6.25744 6.41549 6.59506 6.65457 6.79681 6.89759 6.95089 7.28526 7.31515 7.65802 7.68729 7.75529 8.14673 9.03613 9.57261 9.69860 10.12707 11.15122 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.010193 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.377515 B = 2746.429351 C = 3028.986932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.080 0.920 4 C 0.038 3.962 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.682 5.682 8 C 0.007 3.993 9 C 0.027 3.973 10 O -0.359 6.359 11 N -0.578 5.578 12 C -0.264 4.264 13 H 0.081 0.919 14 C 0.005 3.995 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.266 3.734 21 C 0.283 3.717 22 N -0.528 5.528 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.324 0.676 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 2.460 8.482 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.073 3.927 3 H 0.098 0.902 4 C -0.023 4.023 5 H 0.059 0.941 6 C -0.100 4.100 7 N -0.309 5.309 8 C -0.123 4.123 9 C -0.052 4.052 10 O -0.278 6.278 11 N -0.298 5.298 12 C -0.392 4.392 13 H 0.099 0.901 14 C -0.193 4.193 15 N -0.543 5.543 16 Si 0.732 3.268 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.137 3.863 21 C -0.034 4.034 22 N -0.212 5.212 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.507 1.152 8.406 9.607 hybrid contribution -0.594 0.932 -0.437 1.188 sum -5.101 2.084 7.969 9.689 Atomic orbital electron populations 1.22192 0.97274 1.01914 1.00352 1.20485 0.92955 0.94949 0.84277 0.90192 1.23561 0.95643 0.83672 0.99449 0.94124 1.22705 0.92990 0.98687 0.95667 1.60871 1.62263 1.02849 1.04953 1.22901 0.93345 0.91304 1.04711 1.23110 0.96091 0.96637 0.89322 1.88124 1.71922 1.22797 1.44911 1.44099 1.57472 1.07025 1.21238 1.19277 1.25906 0.93618 1.00368 0.90098 1.24729 0.99713 0.95520 0.99371 1.69884 1.47416 1.07210 1.29783 0.86312 0.78001 0.79142 0.83389 1.21646 1.21591 1.20586 1.18350 0.88109 0.79931 0.99922 1.29898 0.93930 0.91449 0.88120 1.80567 1.11902 1.13037 1.15646 0.93972 0.92416 0.92228 0.87200 0.91054 0.85997 0.87124 0.91314 0.89411 0.94591 0.93023 0.91980 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.03 37.15 0.34 -2.11 16 2 C 0.18 3.27 2.68 -67.93 -0.18 3.09 16 3 H 0.08 1.40 7.77 -51.93 -0.40 0.99 16 4 C 0.04 0.66 2.43 -26.68 -0.06 0.59 16 5 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 6 C 0.03 0.55 5.75 -3.71 -0.02 0.52 16 7 N -0.68 -11.77 6.93 -113.50 -0.79 -12.56 16 8 C 0.01 0.12 6.76 -3.71 -0.03 0.10 16 9 C 0.03 0.43 7.00 37.21 0.26 0.69 16 10 O -0.36 -6.43 5.71 -35.23 -0.20 -6.63 16 11 N -0.58 -12.58 1.66 -168.98 -0.28 -12.86 16 12 C -0.26 -6.44 9.68 -15.06 -0.15 -6.59 16 13 H 0.08 1.93 7.77 -52.49 -0.41 1.52 16 14 C 0.00 0.12 4.99 -17.43 -0.09 0.04 16 15 N -0.90 -24.36 8.75 55.49 0.49 -23.87 16 16 Si 0.90 20.68 29.62 -169.99 -5.04 15.64 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.27 5.88 4.57 -6.83 -0.03 5.85 16 21 C 0.28 6.81 9.34 -20.76 -0.19 6.61 16 22 N -0.53 -13.39 15.85 42.15 0.67 -12.72 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 26 H 0.11 2.64 5.78 -51.93 -0.30 2.34 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.32 4.70 8.89 -39.29 -0.35 4.35 16 29 H 0.11 2.33 5.35 -51.93 -0.28 2.05 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.06 1.24 5.50 -51.93 -0.29 0.95 16 35 H 0.10 2.39 6.39 -51.92 -0.33 2.06 16 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -27.98 271.05 -5.99 -33.97 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.77 Total: 6.15 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.15 Total: 8.79 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.09 Total: -62.01 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.20 Total: -6.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.98 -5.99 -33.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699709851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.335 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds