Wall clock time and date at job start Mon Mar 30 2020 21:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47333 * 120.00048 * 2 1 3 5 5 H 1.08996 * 109.50792 * 299.99911 * 4 2 1 6 6 C 1.53096 * 109.50874 * 179.91132 * 4 2 1 7 7 N 1.47017 * 109.25861 * 183.21654 * 6 4 2 8 8 C 1.47013 * 110.75209 * 58.61325 * 7 6 4 9 9 C 1.53097 * 109.26242 * 301.38565 * 8 7 6 10 10 O 1.43013 * 109.50628 * 60.08313 * 4 2 1 11 11 N 1.46501 * 109.47027 * 239.99839 * 2 1 3 12 12 C 1.36934 * 119.99871 * 120.00078 * 11 2 1 13 13 H 1.07999 * 120.00400 * 357.09594 * 12 11 2 14 14 C 1.38812 * 120.00212 * 177.10374 * 12 11 2 15 15 N 1.31621 * 119.99446 * 335.04480 * 14 12 11 16 16 Si 1.86794 * 120.00531 * 155.04452 * 14 12 11 17 17 H 1.48504 * 109.47260 * 84.99350 * 16 14 12 18 18 H 1.48497 * 109.47353 * 204.99437 * 16 14 12 19 19 H 1.48500 * 109.47172 * 324.99898 * 16 14 12 20 20 C 1.46496 * 119.99841 * 300.27947 * 11 2 1 21 21 C 1.47206 * 109.46945 * 263.21547 * 20 11 2 22 22 N 4.21873 * 119.18515 * 189.26503 * 2 1 3 23 23 H 1.09005 * 109.46900 * 300.00238 * 1 2 3 24 24 H 1.09000 * 109.47595 * 59.99763 * 1 2 3 25 25 H 1.08993 * 109.47784 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.50634 * 303.15199 * 6 4 2 27 27 H 1.08999 * 109.50502 * 63.24057 * 6 4 2 28 28 H 1.00901 * 111.00023 * 294.84171 * 7 6 4 29 29 H 1.09004 * 109.50059 * 61.32133 * 8 7 6 30 30 H 1.09001 * 109.50725 * 181.40502 * 8 7 6 31 31 H 1.08996 * 109.50842 * 176.78068 * 9 8 7 32 32 H 1.09000 * 109.50171 * 296.87013 * 9 8 7 33 33 H 0.97006 * 119.99934 * 180.02562 * 15 14 12 34 34 H 1.08991 * 109.47548 * 23.21655 * 20 11 2 35 35 H 1.09008 * 109.47152 * 143.22422 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6770 -0.2079 2.1396 6 6 3.5709 -0.7237 1.2489 7 7 4.0549 -1.4841 2.4103 8 6 3.5486 -2.8639 2.3772 9 6 2.0179 -2.8401 2.3662 10 8 1.5653 -2.0703 1.2490 11 7 2.0183 -0.6907 -1.1962 12 6 2.8055 -0.0252 -2.0975 13 1 3.0278 1.0215 -1.9511 14 6 3.3177 -0.6958 -3.1997 15 7 3.4856 -2.0005 -3.1566 16 14 3.7689 0.2533 -4.7440 17 1 5.1465 0.7914 -4.6097 18 1 3.7038 -0.6527 -5.9187 19 1 2.8152 1.3761 -4.9313 20 6 1.6593 -2.0914 -1.4310 21 6 2.7474 -2.9627 -0.9581 22 7 3.5871 -3.6351 -0.5930 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.9340 -1.1887 0.3324 27 1 3.9365 0.3016 1.3064 28 1 3.8014 -1.0266 3.2732 29 1 3.9114 -3.3632 1.4787 30 1 3.8985 -3.4013 3.2586 31 1 1.6386 -3.8586 2.2840 32 1 1.6543 -2.3897 3.2898 33 1 3.8439 -2.4692 -3.9266 34 1 0.7434 -2.3275 -0.8895 35 1 1.5025 -2.2524 -2.4977 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699709851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:17 Heat of formation + Delta-G solvation = 5.303157 kcal Electronic energy + Delta-G solvation = -18780.054525 eV Core-core repulsion = 16006.948797 eV Total energy + Delta-G solvation = -2773.105728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78325 -38.03381 -36.14403 -35.30627 -34.27738 -31.81823 -30.42886 -28.75122 -27.04382 -25.19358 -24.48612 -22.27503 -21.02315 -19.38952 -17.68609 -17.31765 -17.21617 -16.58397 -16.07908 -15.93665 -15.57580 -15.30114 -14.89170 -14.03770 -13.83618 -13.76770 -13.35853 -13.28127 -12.79303 -12.75617 -12.62503 -12.47787 -12.38534 -12.15791 -12.12206 -11.82756 -11.65826 -11.48077 -11.29751 -10.88797 -10.43859 -9.18309 -8.93686 -7.85981 -5.13489 1.51678 1.56856 1.63769 2.45789 2.70432 2.87937 3.04168 3.29779 3.34257 3.75421 3.96527 4.09259 4.18808 4.23558 4.33276 4.39622 4.50831 4.64709 4.68786 4.84842 4.87750 5.02946 5.19484 5.25368 5.31964 5.38513 5.46515 5.67650 5.74783 5.92441 6.26767 6.37777 6.53792 7.13108 7.71148 7.88212 8.27424 9.19029 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.010193 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.377515 B = 2746.429351 C = 3028.986932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.086 0.914 4 C 0.047 3.953 5 H 0.074 0.926 6 C 0.035 3.965 7 N -0.688 5.688 8 C 0.007 3.993 9 C 0.029 3.971 10 O -0.376 6.376 11 N -0.584 5.584 12 C -0.251 4.251 13 H 0.087 0.913 14 C -0.047 4.047 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.299 1.299 18 H -0.302 1.302 19 H -0.268 1.268 20 C 0.273 3.727 21 C 0.290 3.710 22 N -0.557 5.557 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.345 0.655 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 3.823 10.259 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.066 3.934 3 H 0.104 0.896 4 C -0.014 4.014 5 H 0.091 0.909 6 C -0.095 4.095 7 N -0.318 5.318 8 C -0.123 4.123 9 C -0.049 4.049 10 O -0.295 6.295 11 N -0.304 5.304 12 C -0.381 4.381 13 H 0.105 0.895 14 C -0.242 4.242 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.227 1.227 18 H -0.229 1.229 19 H -0.192 1.192 20 C 0.144 3.856 21 C -0.026 4.026 22 N -0.241 5.241 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.005 2.554 10.221 12.126 hybrid contribution -0.112 0.546 -0.883 1.044 sum -6.117 3.099 9.338 11.585 Atomic orbital electron populations 1.22051 0.94804 1.01971 1.01709 1.20789 0.94659 0.94894 0.83092 0.89588 1.23431 0.94091 0.83805 1.00101 0.90853 1.22484 0.94469 0.98387 0.94187 1.60742 1.62740 1.02948 1.05342 1.22822 0.94626 0.91067 1.03750 1.23188 0.94811 0.97046 0.89862 1.88082 1.71915 1.23233 1.46284 1.44255 1.56913 1.06840 1.22431 1.19594 1.24331 0.93878 1.00250 0.89497 1.25292 1.01180 0.96083 1.01627 1.70034 1.49632 1.08346 1.29447 0.85449 0.77262 0.78032 0.80549 1.22702 1.22871 1.19249 1.18304 0.88383 0.80063 0.98874 1.30318 0.93816 0.91010 0.87440 1.80574 1.12770 1.14128 1.16596 0.91009 0.92687 0.92756 0.92442 0.90508 0.83734 0.91197 0.89080 0.88925 0.91510 0.94412 0.89489 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.03 71.98 0.65 -3.36 16 2 C 0.17 5.74 2.68 44.99 0.12 5.86 16 3 H 0.09 2.75 7.77 -2.39 -0.02 2.73 16 4 C 0.05 1.47 2.43 30.63 0.07 1.54 16 5 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 6 C 0.03 1.26 5.75 86.31 0.50 1.76 16 7 N -0.69 -22.42 6.93 -512.99 -3.55 -25.97 16 8 C 0.01 0.23 6.76 86.31 0.58 0.81 16 9 C 0.03 0.84 7.00 72.01 0.50 1.34 16 10 O -0.38 -12.50 5.71 -148.98 -0.85 -13.35 16 11 N -0.58 -24.85 1.66 -688.52 -1.14 -25.99 16 12 C -0.25 -12.14 9.68 84.03 0.81 -11.33 16 13 H 0.09 4.04 7.77 -2.91 -0.02 4.01 16 14 C -0.05 -2.44 4.99 84.86 0.42 -2.02 16 15 N -0.93 -51.59 8.75 21.65 0.19 -51.40 16 16 Si 0.96 43.09 29.62 68.60 2.03 45.12 16 17 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 18 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 C 0.27 12.02 4.57 84.58 0.39 12.41 16 21 C 0.29 14.16 9.34 89.44 0.84 14.99 16 22 N -0.56 -28.87 15.85 20.01 0.32 -28.56 16 23 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.55 6.21 -2.39 -0.01 1.54 16 26 H 0.06 2.76 5.78 -2.39 -0.01 2.75 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.34 8.86 8.89 -89.69 -0.80 8.06 16 29 H 0.07 2.94 5.35 -2.39 -0.01 2.93 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 34 H 0.09 3.35 5.50 -2.39 -0.01 3.34 16 35 H 0.08 3.80 6.39 -2.38 -0.02 3.78 16 Total: -1.00 -61.07 271.05 2.19 -58.88 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.31 Total: 19.24 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 4.89 Total: 22.02 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -4.19 Total: -131.91 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.85 Total: -13.35 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.07 2.19 -58.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699709851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.188 kcal (2) G-P(sol) polarization free energy of solvation -61.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds