Wall clock time and date at job start Mon Mar 30 2020 21:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.52992 * 109.47563 * 120.00153 * 2 1 3 5 5 H 1.08997 * 109.51017 * 173.10325 * 4 2 1 6 6 C 1.53103 * 109.50640 * 293.18982 * 4 2 1 7 7 N 1.47013 * 109.25871 * 176.78488 * 6 4 2 8 8 C 1.47021 * 110.74833 * 301.38027 * 7 6 4 9 9 C 1.53099 * 109.25752 * 58.61895 * 8 7 6 10 10 O 1.43016 * 109.50602 * 53.01265 * 4 2 1 11 11 N 1.46500 * 109.47126 * 240.00247 * 2 1 3 12 12 C 1.36940 * 120.00354 * 126.41700 * 11 2 1 13 13 H 1.08007 * 119.99926 * 326.32578 * 12 11 2 14 14 C 1.38806 * 120.00208 * 146.32305 * 12 11 2 15 15 N 1.31626 * 120.00011 * 156.58962 * 14 12 11 16 16 Si 1.86798 * 120.00177 * 336.59452 * 14 12 11 17 17 H 1.48493 * 109.47449 * 95.38144 * 16 14 12 18 18 H 1.48504 * 109.46997 * 215.38300 * 16 14 12 19 19 H 1.48498 * 109.47122 * 335.38218 * 16 14 12 20 20 C 1.46499 * 120.00074 * 306.42085 * 11 2 1 21 21 C 1.47200 * 109.47612 * 92.45359 * 20 11 2 22 22 N 4.16276 * 60.37114 * 238.00658 * 2 1 3 23 23 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47525 * 59.99860 * 1 2 3 25 25 H 1.09003 * 109.47471 * 299.99835 * 1 2 3 26 26 H 1.09000 * 109.50134 * 296.71797 * 6 4 2 27 27 H 1.08998 * 109.50537 * 56.80083 * 6 4 2 28 28 H 1.00897 * 111.00149 * 65.15711 * 7 6 4 29 29 H 1.09005 * 109.50006 * 178.55578 * 8 7 6 30 30 H 1.08999 * 109.50860 * 298.68125 * 8 7 6 31 31 H 1.09004 * 109.50507 * 63.08656 * 9 8 7 32 32 H 1.08998 * 109.50379 * 183.17035 * 9 8 7 33 33 H 0.96998 * 119.99944 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.47372 * 212.45816 * 20 11 2 35 35 H 1.09003 * 109.46616 * 332.45395 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 3.1230 -0.8296 1.1902 6 6 1.6747 0.0918 2.4939 7 7 2.0988 -0.6428 3.6946 8 6 1.4577 -1.9647 3.7500 9 6 1.8252 -2.7572 2.4926 10 8 1.4346 -2.0141 1.3348 11 7 2.0183 -0.6906 -1.1962 12 6 2.9103 -0.0695 -2.0292 13 1 2.8617 1.0000 -2.1716 14 6 3.8769 -0.8145 -2.6905 15 7 4.4177 -0.3550 -3.7991 16 14 4.4102 -2.4693 -2.0074 17 1 3.6403 -3.5509 -2.6726 18 1 5.8601 -2.6656 -2.2614 19 1 4.1543 -2.5069 -0.5451 20 6 1.5523 -2.0455 -1.5013 21 6 0.3781 -1.9731 -2.3861 22 7 -0.5281 -1.9171 -3.0689 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 2.1808 1.0566 2.4598 27 1 0.5963 0.2474 2.5235 28 1 3.1036 -0.7264 3.7313 29 1 1.8054 -2.5011 4.6329 30 1 0.3757 -1.8427 3.8001 31 1 2.9019 -2.9255 2.4702 32 1 1.3070 -3.7161 2.5024 33 1 5.0929 -0.8758 -4.2615 34 1 2.3481 -2.6001 -1.9985 35 1 1.2792 -2.5528 -0.5760 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699709854.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:19 Heat of formation + Delta-G solvation = 17.783832 kcal Electronic energy + Delta-G solvation = -18235.982536 eV Core-core repulsion = 15463.418011 eV Total energy + Delta-G solvation = -2772.564526 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67865 -36.96021 -35.03009 -34.29428 -32.83354 -31.18127 -29.14181 -27.25061 -25.78981 -24.39232 -23.07642 -21.22571 -19.59205 -18.01409 -16.59476 -16.36017 -15.81266 -15.52213 -15.10658 -14.83770 -14.68664 -13.92085 -13.14310 -12.92303 -12.86261 -12.57004 -12.35941 -12.07022 -11.97283 -11.72733 -11.58605 -11.33079 -11.01860 -10.89175 -10.75191 -10.62652 -10.31840 -10.03165 -9.84302 -9.58628 -8.70240 -8.21419 -7.21482 -6.15384 -3.57986 3.17067 3.34335 3.36604 3.56751 3.69822 3.97292 4.20712 4.35559 4.74509 4.93219 5.02879 5.09347 5.16852 5.27124 5.34584 5.45848 5.53001 5.67527 5.67950 5.84875 5.95461 5.99145 6.15356 6.21430 6.23149 6.46995 6.62824 6.79906 6.85838 7.24676 7.40693 7.79779 8.19574 8.50033 8.74047 9.50595 9.85686 10.99328 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.023494 B = 0.010049 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.494788 B = 2785.773511 C = 3141.789682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 H 0.091 0.909 4 C 0.036 3.964 5 H 0.064 0.936 6 C 0.025 3.975 7 N -0.686 5.686 8 C 0.023 3.977 9 C 0.018 3.982 10 O -0.367 6.367 11 N -0.579 5.579 12 C -0.283 4.283 13 H 0.086 0.914 14 C 0.040 3.960 15 N -0.887 5.887 16 Si 0.869 3.131 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.262 1.262 20 C 0.209 3.791 21 C 0.213 3.787 22 N -0.481 5.481 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.339 0.661 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -3.257 15.139 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 H 0.109 0.891 4 C -0.025 4.025 5 H 0.082 0.918 6 C -0.105 4.105 7 N -0.314 5.314 8 C -0.107 4.107 9 C -0.061 4.061 10 O -0.286 6.286 11 N -0.299 5.299 12 C -0.411 4.411 13 H 0.104 0.896 14 C -0.162 4.162 15 N -0.527 5.527 16 Si 0.698 3.302 17 H -0.210 1.210 18 H -0.225 1.225 19 H -0.187 1.187 20 C 0.080 3.920 21 C -0.106 4.106 22 N -0.161 5.161 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.369 -2.903 14.269 15.203 hybrid contribution 1.536 -1.430 -0.104 2.101 sum -2.833 -4.333 14.165 15.081 Atomic orbital electron populations 1.22202 0.96953 1.02009 1.00721 1.20618 0.92814 0.95527 0.83361 0.89074 1.23765 0.97732 0.83882 0.97122 0.91805 1.22778 1.02494 0.97461 0.87802 1.60924 1.12843 1.17756 1.39887 1.22626 1.00910 0.89783 0.97411 1.23221 0.99623 0.95935 0.87313 1.88039 1.69839 1.28724 1.42018 1.44073 1.48577 1.13877 1.23390 1.18855 1.07232 0.94324 1.20702 0.89607 1.25394 0.96696 0.97966 0.96161 1.69878 1.28867 1.39501 1.14434 0.87075 0.77361 0.84821 0.80904 1.20983 1.22534 1.18652 1.19286 0.87558 0.90088 0.95108 1.31280 0.94481 0.91578 0.93308 1.80941 1.13760 1.09961 1.11410 0.92368 0.92823 0.93014 0.89679 0.89777 0.84390 0.90266 0.90141 0.93550 0.88893 0.92356 0.90091 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.04 37.15 0.30 -2.31 16 2 C 0.18 3.24 2.68 -67.94 -0.18 3.05 16 3 H 0.09 1.58 7.90 -51.93 -0.41 1.17 16 4 C 0.04 0.55 2.66 -26.68 -0.07 0.48 16 5 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 6 C 0.02 0.31 5.90 -3.71 -0.02 0.28 16 7 N -0.69 -7.77 6.93 -113.49 -0.79 -8.56 16 8 C 0.02 0.23 6.76 -3.71 -0.03 0.21 16 9 C 0.02 0.21 7.00 37.21 0.26 0.47 16 10 O -0.37 -5.58 6.75 -35.23 -0.24 -5.82 16 11 N -0.58 -12.58 2.04 -168.98 -0.34 -12.93 16 12 C -0.28 -7.33 9.85 -15.06 -0.15 -7.48 16 13 H 0.09 2.40 8.06 -52.48 -0.42 1.97 16 14 C 0.04 1.08 5.32 -17.43 -0.09 0.99 16 15 N -0.89 -25.93 13.97 55.49 0.78 -25.15 16 16 Si 0.87 20.35 24.94 -169.99 -4.24 16.11 16 17 H -0.28 -6.48 6.66 56.52 0.38 -6.11 16 18 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 20 C 0.21 4.38 4.30 -6.83 -0.03 4.36 16 21 C 0.21 4.74 14.40 -20.76 -0.30 4.44 16 22 N -0.48 -11.26 18.54 42.15 0.78 -10.48 16 23 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.05 6.50 -51.93 -0.34 0.71 16 28 H 0.34 3.57 8.89 -39.29 -0.35 3.22 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 1.83 2.72 -51.93 -0.14 1.69 16 35 H 0.11 2.08 5.11 -51.93 -0.27 1.82 16 LS Contribution 278.35 15.07 4.19 4.19 Total: -1.00 -29.72 278.35 -4.88 -34.60 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.72 Total: 3.53 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.31 Total: 4.49 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.43 Total: -57.11 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.24 Total: -5.82 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.24 Total: 16.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.72 -4.88 -34.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699709854.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.389 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds