Wall clock time and date at job start Mon Mar 30 2020 21:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42910 * 109.46946 * 2 1 4 4 C 1.34974 * 116.99577 * 180.02562 * 3 2 1 5 5 O 1.21702 * 120.00284 * 359.97438 * 4 3 2 6 6 C 1.41186 * 119.99315 * 180.02562 * 4 3 2 7 7 C 1.35028 * 119.99870 * 187.60616 * 6 4 3 8 8 N 1.36581 * 119.99874 * 34.23257 * 7 6 4 9 9 C 1.46921 * 120.62785 * 206.02530 * 8 7 6 10 10 C 1.53620 * 108.54371 * 126.37225 * 9 8 7 11 11 C 1.53046 * 109.24426 * 54.85075 * 10 9 8 12 12 C 1.53031 * 109.53785 * 298.51550 * 11 10 9 13 13 C 1.50704 * 109.52334 * 181.32849 * 12 11 10 14 14 N 1.27935 * 120.00177 * 335.14102 * 13 12 11 15 15 Si 1.86799 * 119.99729 * 155.14596 * 13 12 11 16 16 H 1.48497 * 109.47341 * 90.00291 * 15 13 12 17 17 H 1.48500 * 109.46927 * 210.00019 * 15 13 12 18 18 H 1.48498 * 109.47437 * 329.99728 * 15 13 12 19 19 C 1.46926 * 120.63008 * 26.30522 * 8 7 6 20 20 H 1.09004 * 109.47115 * 299.99948 * 1 2 3 21 21 H 1.08997 * 109.47451 * 59.99965 * 1 2 3 22 22 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47291 * 240.00191 * 2 1 3 24 24 H 1.08997 * 109.47451 * 120.00035 * 2 1 3 25 25 H 1.07999 * 120.00613 * 7.60285 * 6 4 3 26 26 H 1.08004 * 120.00149 * 214.24073 * 7 6 4 27 27 H 1.09006 * 109.58432 * 246.20086 * 9 8 7 28 28 H 1.08999 * 109.59241 * 6.62870 * 9 8 7 29 29 H 1.09002 * 109.63345 * 294.86377 * 10 9 8 30 30 H 1.08997 * 109.46181 * 174.73941 * 10 9 8 31 31 H 1.08994 * 109.46055 * 178.49208 * 11 10 9 32 32 H 1.09001 * 109.45474 * 58.53443 * 11 10 9 33 33 H 1.08994 * 109.49981 * 301.41083 * 12 11 10 34 34 H 0.96998 * 120.00361 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.58498 * 353.37283 * 19 8 7 36 36 H 1.09006 * 109.58345 * 113.65385 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3444 1.5242 -0.0005 5 8 4.0857 0.5590 -0.0005 6 6 3.8839 2.8289 0.0000 7 6 5.2129 3.0099 -0.1553 8 7 5.9276 2.1677 -0.9587 9 6 7.3631 1.9541 -0.7304 10 6 7.6189 0.4444 -0.6069 11 6 7.0678 -0.2637 -1.8467 12 6 5.5570 -0.0372 -1.9363 13 6 5.0095 -0.7616 -3.1391 14 7 5.7729 -1.0194 -4.1328 15 14 3.2162 -1.2829 -3.1790 16 1 2.3975 -0.1950 -3.7717 17 1 3.0761 -2.5117 -4.0010 18 1 2.7492 -1.5565 -1.7961 19 6 5.2766 1.4628 -2.0714 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8899 25 1 3.2337 3.6822 0.1245 26 1 5.7109 3.8206 0.3558 27 1 7.9304 2.3561 -1.5700 28 1 7.6651 2.4538 0.1900 29 1 7.1205 0.0601 0.2831 30 1 8.6909 0.2627 -0.5306 31 1 7.2712 -1.3321 -1.7752 32 1 7.5487 0.1385 -2.7384 33 1 5.0780 -0.4169 -1.0338 34 1 5.4206 -1.4859 -4.9068 35 1 4.2014 1.6383 -2.0360 36 1 5.6754 1.8274 -3.0182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703791610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:35 Heat of formation + Delta-G solvation = -25.314981 kcal Electronic energy + Delta-G solvation = -18751.201961 eV Core-core repulsion = 15930.820040 eV Total energy + Delta-G solvation = -2820.381921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.139 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63928 -40.06661 -37.55655 -36.83674 -34.80751 -32.57207 -32.04180 -31.14408 -26.71646 -25.54281 -24.48852 -23.05690 -21.96770 -20.39320 -20.22826 -18.74035 -18.04866 -17.41385 -17.17914 -16.68729 -16.01206 -15.62284 -15.26079 -15.23964 -14.65453 -14.36933 -14.27127 -14.03121 -13.75965 -13.56863 -13.45141 -13.08091 -12.83344 -12.58087 -12.25864 -12.12194 -11.84819 -11.76421 -11.44798 -11.27993 -11.04147 -10.84864 -10.81000 -9.77007 -8.52808 0.32806 0.77517 1.03728 1.35102 1.65638 1.80524 1.93734 2.33030 2.48117 3.54934 3.71587 3.92617 3.98980 4.05818 4.14551 4.16831 4.22497 4.32576 4.40247 4.49121 4.50753 4.60498 4.68387 4.85919 4.87503 4.96171 4.97233 5.02590 5.12278 5.15722 5.26181 5.29001 5.33072 5.59229 5.92904 6.12737 6.31923 6.88815 7.46782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.360 6.360 4 C 0.503 3.497 5 O -0.540 6.540 6 C -0.395 4.395 7 C 0.273 3.727 8 N -0.575 5.575 9 C 0.108 3.892 10 C -0.138 4.138 11 C -0.098 4.098 12 C -0.090 4.090 13 C 0.004 3.996 14 N -0.627 5.627 15 Si 0.901 3.099 16 H -0.236 1.236 17 H -0.246 1.246 18 H -0.215 1.215 19 C 0.137 3.863 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.141 0.859 26 H 0.149 0.851 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.334 0.666 35 H 0.080 0.920 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 1.645 0.146 1.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 O -0.277 6.277 4 C 0.357 3.643 5 O -0.435 6.435 6 C -0.424 4.424 7 C 0.138 3.862 8 N -0.275 5.275 9 C -0.014 4.014 10 C -0.176 4.176 11 C -0.136 4.136 12 C -0.109 4.109 13 C -0.246 4.246 14 N -0.240 5.240 15 Si 0.719 3.281 16 H -0.159 1.159 17 H -0.169 1.169 18 H -0.138 1.138 19 C 0.013 3.987 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.159 0.841 26 H 0.166 0.834 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.148 1.155 -0.227 1.645 hybrid contribution -0.597 -0.450 -0.247 0.787 sum 0.552 0.705 -0.474 1.013 Atomic orbital electron populations 1.21818 0.93015 1.02822 1.03496 1.22883 0.95311 0.81706 1.02588 1.86224 1.25221 1.31093 1.85210 1.19611 0.79956 0.90555 0.74178 1.90606 1.59574 1.43448 1.49903 1.20218 0.95475 0.95512 1.31224 1.21855 0.91005 0.88094 0.85216 1.47058 1.08597 1.44742 1.27138 1.21969 0.79999 0.97272 1.02151 1.22048 1.01499 0.94318 0.99692 1.21360 0.93832 1.00827 0.97606 1.21316 0.97633 0.94551 0.97357 1.30161 1.04803 0.94573 0.95055 1.68205 1.41109 1.11496 1.03152 0.86343 0.76054 0.81885 0.83827 1.15875 1.16899 1.13792 1.21621 0.98206 0.90904 0.87949 0.91431 0.91623 0.90524 0.91447 0.91792 0.84106 0.83388 0.90778 0.89701 0.90886 0.90567 0.91656 0.91008 0.84314 0.84917 0.90185 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.02 10.28 37.15 0.38 0.36 16 2 C 0.05 0.11 6.10 37.15 0.23 0.33 16 3 O -0.36 -1.31 10.10 -41.25 -0.42 -1.73 16 4 C 0.50 1.64 5.91 31.85 0.19 1.82 16 5 O -0.54 -2.14 10.50 -19.42 -0.20 -2.35 16 6 C -0.40 -0.39 9.19 -39.60 -0.36 -0.76 16 7 C 0.27 -0.27 9.88 -16.58 -0.16 -0.43 16 8 N -0.58 0.25 2.44 -173.34 -0.42 -0.18 16 9 C 0.11 -0.21 6.54 -3.49 -0.02 -0.24 16 10 C -0.14 0.11 6.10 -26.39 -0.16 -0.05 16 11 C -0.10 -0.07 4.62 -26.69 -0.12 -0.19 16 12 C -0.09 -0.11 1.81 -91.65 -0.17 -0.28 16 13 C 0.00 0.00 4.84 -13.90 -0.07 -0.06 16 14 N -0.63 -0.96 12.73 56.22 0.72 -0.24 16 15 Si 0.90 0.59 28.34 -169.99 -4.82 -4.23 16 16 H -0.24 -0.26 7.11 56.52 0.40 0.14 16 17 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 18 H -0.21 -0.20 4.89 56.52 0.28 0.07 16 19 C 0.14 0.10 4.58 -3.71 -0.02 0.08 16 20 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 21 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 23 H 0.07 0.14 4.34 -51.93 -0.23 -0.09 16 24 H 0.06 0.15 8.13 -51.93 -0.42 -0.28 16 25 H 0.14 0.01 8.06 -52.49 -0.42 -0.41 16 26 H 0.15 -0.63 8.06 -52.48 -0.42 -1.06 16 27 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.08 -0.30 7.93 -51.93 -0.41 -0.71 16 29 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.07 0.09 7.85 -51.93 -0.41 -0.32 16 33 H 0.14 0.38 4.52 -53.11 -0.24 0.14 16 34 H 0.33 0.03 8.23 -40.82 -0.34 -0.30 16 35 H 0.08 0.12 5.43 -51.93 -0.28 -0.16 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 280.75 15.07 4.23 4.23 Total: 0.00 -3.67 280.75 -6.68 -10.35 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -5.47 Total: -6.45 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.29 Total: 0.58 kcal Atomic # 7 Polarization: -0.71 SS G_CDS: 0.29 Total: -0.42 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.62 Total: -4.07 kcal Atomic # 14 Polarization: 0.59 SS G_CDS: -4.82 Total: -4.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -3.67 -6.68 -10.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703791610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.965 kcal (2) G-P(sol) polarization free energy of solvation -3.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds