Wall clock time and date at job start Mon Mar 30 2020 21:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42910 * 109.46946 * 2 1 4 4 C 1.34974 * 116.99577 * 180.02562 * 3 2 1 5 5 O 1.21702 * 120.00284 * 359.97438 * 4 3 2 6 6 C 1.41186 * 119.99315 * 180.02562 * 4 3 2 7 7 C 1.35028 * 119.99870 * 187.60616 * 6 4 3 8 8 N 1.36581 * 119.99874 * 34.23257 * 7 6 4 9 9 C 1.46921 * 120.62785 * 206.02530 * 8 7 6 10 10 C 1.53620 * 108.54371 * 126.37225 * 9 8 7 11 11 C 1.53046 * 109.24426 * 54.85075 * 10 9 8 12 12 C 1.53031 * 109.53785 * 298.51550 * 11 10 9 13 13 C 1.50704 * 109.52334 * 181.32849 * 12 11 10 14 14 N 1.27935 * 120.00177 * 335.14102 * 13 12 11 15 15 Si 1.86799 * 119.99729 * 155.14596 * 13 12 11 16 16 H 1.48497 * 109.47341 * 90.00291 * 15 13 12 17 17 H 1.48500 * 109.46927 * 210.00019 * 15 13 12 18 18 H 1.48498 * 109.47437 * 329.99728 * 15 13 12 19 19 C 1.46926 * 120.63008 * 26.30522 * 8 7 6 20 20 H 1.09004 * 109.47115 * 299.99948 * 1 2 3 21 21 H 1.08997 * 109.47451 * 59.99965 * 1 2 3 22 22 H 1.08999 * 109.47264 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47291 * 240.00191 * 2 1 3 24 24 H 1.08997 * 109.47451 * 120.00035 * 2 1 3 25 25 H 1.07999 * 120.00613 * 7.60285 * 6 4 3 26 26 H 1.08004 * 120.00149 * 214.24073 * 7 6 4 27 27 H 1.09006 * 109.58432 * 246.20086 * 9 8 7 28 28 H 1.08999 * 109.59241 * 6.62870 * 9 8 7 29 29 H 1.09002 * 109.63345 * 294.86377 * 10 9 8 30 30 H 1.08997 * 109.46181 * 174.73941 * 10 9 8 31 31 H 1.08994 * 109.46055 * 178.49208 * 11 10 9 32 32 H 1.09001 * 109.45474 * 58.53443 * 11 10 9 33 33 H 1.08994 * 109.49981 * 301.41083 * 12 11 10 34 34 H 0.96998 * 120.00361 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.58498 * 353.37283 * 19 8 7 36 36 H 1.09006 * 109.58345 * 113.65385 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3444 1.5242 -0.0005 5 8 4.0857 0.5590 -0.0005 6 6 3.8839 2.8289 0.0000 7 6 5.2129 3.0099 -0.1553 8 7 5.9276 2.1677 -0.9587 9 6 7.3631 1.9541 -0.7304 10 6 7.6189 0.4444 -0.6069 11 6 7.0678 -0.2637 -1.8467 12 6 5.5570 -0.0372 -1.9363 13 6 5.0095 -0.7616 -3.1391 14 7 5.7729 -1.0194 -4.1328 15 14 3.2162 -1.2829 -3.1790 16 1 2.3975 -0.1950 -3.7717 17 1 3.0761 -2.5117 -4.0010 18 1 2.7492 -1.5565 -1.7961 19 6 5.2766 1.4628 -2.0714 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8899 25 1 3.2337 3.6822 0.1245 26 1 5.7109 3.8206 0.3558 27 1 7.9304 2.3561 -1.5700 28 1 7.6651 2.4538 0.1900 29 1 7.1205 0.0601 0.2831 30 1 8.6909 0.2627 -0.5306 31 1 7.2712 -1.3321 -1.7752 32 1 7.5487 0.1385 -2.7384 33 1 5.0780 -0.4169 -1.0338 34 1 5.4206 -1.4859 -4.9068 35 1 4.2014 1.6383 -2.0360 36 1 5.6754 1.8274 -3.0182 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703791610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:35 Heat of formation + Delta-G solvation = -17.429540 kcal Electronic energy + Delta-G solvation = -18750.860022 eV Core-core repulsion = 15930.820040 eV Total energy + Delta-G solvation = -2820.039983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.139 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73331 -40.13969 -37.66868 -36.94072 -34.83620 -32.65914 -32.05702 -31.15535 -26.74539 -25.55262 -24.54960 -23.13985 -21.99593 -20.43104 -20.32841 -18.84232 -18.13494 -17.50717 -17.31540 -16.68641 -16.06471 -15.66093 -15.32210 -15.24423 -14.69455 -14.47264 -14.31828 -13.99991 -13.77646 -13.59378 -13.46269 -13.12974 -12.90777 -12.68125 -12.31397 -12.18551 -11.90714 -11.74966 -11.52038 -11.35601 -11.17775 -10.98336 -10.86315 -9.87035 -8.52972 0.33384 0.67125 0.94514 1.25857 1.56340 1.70868 1.94136 2.26227 2.39030 3.51601 3.73388 3.96920 4.01764 4.03216 4.09388 4.12817 4.23823 4.35559 4.36863 4.39152 4.55158 4.59222 4.75455 4.83265 4.86434 4.89405 4.96439 5.02730 5.12212 5.14227 5.22069 5.27007 5.29077 5.51453 5.88898 6.06167 6.37391 6.82056 7.31066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.374 6.374 4 C 0.490 3.510 5 O -0.557 6.557 6 C -0.423 4.423 7 C 0.291 3.709 8 N -0.575 5.575 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.095 4.095 12 C -0.089 4.089 13 C 0.003 3.997 14 N -0.638 5.638 15 Si 0.922 3.078 16 H -0.242 1.242 17 H -0.248 1.248 18 H -0.223 1.223 19 C 0.138 3.862 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.146 0.854 26 H 0.190 0.810 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.341 0.659 35 H 0.069 0.931 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 2.543 0.254 2.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.292 6.292 4 C 0.346 3.654 5 O -0.454 6.454 6 C -0.452 4.452 7 C 0.155 3.845 8 N -0.274 5.274 9 C -0.014 4.014 10 C -0.172 4.172 11 C -0.133 4.133 12 C -0.108 4.108 13 C -0.246 4.246 14 N -0.251 5.251 15 Si 0.741 3.259 16 H -0.166 1.166 17 H -0.172 1.172 18 H -0.146 1.146 19 C 0.013 3.987 20 H 0.086 0.914 21 H 0.085 0.915 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.164 0.836 26 H 0.207 0.793 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.989 2.051 -0.123 2.859 hybrid contribution -0.804 -0.743 -0.297 1.134 sum 1.185 1.308 -0.420 1.814 Atomic orbital electron populations 1.21838 0.91516 1.03910 1.03556 1.23001 0.96594 0.81373 1.02142 1.86225 1.25810 1.31679 1.85442 1.20071 0.79746 0.91369 0.74224 1.90608 1.59616 1.43990 1.51202 1.20328 0.96592 0.94698 1.33565 1.22440 0.90463 0.88150 0.83460 1.47261 1.09383 1.44106 1.26681 1.22134 0.78952 0.96446 1.03916 1.22012 1.02007 0.95156 0.98025 1.21316 0.93432 1.00319 0.98249 1.21251 0.97887 0.95010 0.96693 1.30225 1.05000 0.94391 0.95016 1.68190 1.41481 1.11895 1.03565 0.86041 0.75521 0.81300 0.83075 1.16558 1.17155 1.14617 1.21542 0.97837 0.90632 0.88671 0.91392 0.91473 0.88939 0.91695 0.92491 0.83612 0.79335 0.89547 0.87286 0.92494 0.89203 0.92818 0.91352 0.85832 0.84172 0.91220 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.16 10.28 71.98 0.74 0.58 16 2 C 0.04 0.26 6.10 71.98 0.44 0.69 16 3 O -0.37 -3.35 10.10 -58.92 -0.60 -3.95 16 4 C 0.49 3.84 5.91 68.54 0.40 4.25 16 5 O -0.56 -5.28 10.50 19.17 0.20 -5.08 16 6 C -0.42 -0.94 9.19 22.25 0.20 -0.74 16 7 C 0.29 -0.94 9.88 83.21 0.82 -0.12 16 8 N -0.58 0.98 2.44 -702.31 -1.72 -0.74 16 9 C 0.11 -0.60 6.54 86.51 0.57 -0.03 16 10 C -0.13 0.26 6.10 30.82 0.19 0.45 16 11 C -0.10 -0.18 4.62 30.62 0.14 -0.03 16 12 C -0.09 -0.31 1.81 -11.46 -0.02 -0.33 16 13 C 0.00 0.01 4.84 88.68 0.43 0.44 16 14 N -0.64 -2.40 12.73 24.11 0.31 -2.09 16 15 Si 0.92 2.35 28.34 68.60 1.94 4.29 16 16 H -0.24 -0.83 7.11 99.48 0.71 -0.13 16 17 H -0.25 -0.68 7.11 99.48 0.71 0.03 16 18 H -0.22 -0.82 4.89 99.48 0.49 -0.34 16 19 C 0.14 0.25 4.58 86.36 0.40 0.64 16 20 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 21 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 22 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.07 0.39 4.34 -2.39 -0.01 0.38 16 24 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 25 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 26 H 0.19 -2.19 8.06 -2.91 -0.02 -2.22 16 27 H 0.09 -0.64 8.14 -2.38 -0.02 -0.66 16 28 H 0.11 -1.09 7.93 -2.39 -0.02 -1.11 16 29 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 0.18 7.85 -2.39 -0.02 0.16 16 33 H 0.12 0.90 4.52 -20.99 -0.09 0.80 16 34 H 0.34 0.28 8.23 -92.71 -0.76 -0.48 16 35 H 0.07 0.29 5.43 -2.39 -0.01 0.28 16 36 H 0.08 0.07 8.14 -2.38 -0.02 0.05 16 Total: 0.00 -10.14 280.75 5.21 -4.92 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: 0.76 Total: -3.17 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.31 Total: 5.81 kcal Atomic # 7 Polarization: -1.42 SS G_CDS: -1.41 Total: -2.83 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.39 Total: -9.03 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 1.94 Total: 4.29 kcal Total: -10.14 5.21 -4.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703791610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.505 kcal (2) G-P(sol) polarization free energy of solvation -10.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds