Wall clock time and date at job start Mon Mar 30 2020 21:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47068 * 2 1 4 4 H 1.09000 * 109.47372 * 303.94939 * 3 2 1 5 5 C 1.50696 * 109.47118 * 63.95304 * 3 2 1 6 6 H 1.08003 * 119.99990 * 84.56855 * 5 3 2 7 7 C 1.37874 * 120.00032 * 264.56534 * 5 3 2 8 8 N 1.31517 * 120.00050 * 353.51053 * 7 5 3 9 9 Si 1.86802 * 120.00283 * 173.50974 * 7 5 3 10 10 H 1.48497 * 109.46916 * 90.00115 * 9 7 5 11 11 H 1.48495 * 109.47401 * 210.00442 * 9 7 5 12 12 H 1.48504 * 109.46875 * 330.00347 * 9 7 5 13 13 N 1.46908 * 109.47132 * 183.95125 * 3 2 1 14 14 C 1.46904 * 110.99759 * 308.40760 * 13 3 2 15 15 C 1.46903 * 110.99586 * 72.35749 * 13 3 2 16 16 C 1.50698 * 109.46589 * 166.77211 * 15 13 3 17 17 N 1.31078 * 126.66086 * 269.68214 * 16 15 13 18 18 N 1.28838 * 107.99319 * 179.89810 * 17 16 15 19 19 N 1.28747 * 109.39607 * 0.37775 * 18 17 16 20 20 N 1.29015 * 108.80728 * 359.76862 * 19 18 17 21 21 C 1.46504 * 126.43635 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47413 * 62.88405 * 1 2 3 23 23 H 1.09002 * 109.47128 * 302.88175 * 1 2 3 24 24 H 1.09001 * 109.47259 * 182.88204 * 1 2 3 25 25 H 1.09001 * 109.47084 * 120.00083 * 2 1 3 26 26 H 1.09004 * 109.47022 * 239.99822 * 2 1 3 27 27 H 0.96999 * 120.00165 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47063 * 59.99882 * 14 13 3 29 29 H 1.08996 * 109.46761 * 179.97438 * 14 13 3 30 30 H 1.08993 * 109.46858 * 299.99382 * 14 13 3 31 31 H 1.09004 * 109.47170 * 286.76947 * 15 13 3 32 32 H 1.08996 * 109.47608 * 46.77178 * 15 13 3 33 33 H 1.09000 * 109.46797 * 270.02025 * 21 20 19 34 34 H 1.08997 * 109.46852 * 30.01948 * 21 20 19 35 35 H 1.09003 * 109.47129 * 150.02631 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6200 1.9763 -0.8525 5 6 1.6192 2.1240 1.2765 6 1 2.2171 2.0150 2.1693 7 6 0.4710 2.8868 1.3046 8 7 -0.1876 3.1250 0.1914 9 14 -0.1493 3.5818 2.9238 10 1 0.4493 4.9220 3.1488 11 1 -1.6286 3.7019 2.8766 12 1 0.2385 2.6738 4.0331 13 7 3.5059 1.4436 -0.0954 14 6 4.1004 0.5675 0.9229 15 6 3.9460 1.0584 -1.4431 16 6 5.4096 1.3791 -1.6042 17 7 5.9206 2.5014 -2.0484 18 7 7.2038 2.3870 -2.0356 19 7 7.5246 1.2179 -1.6021 20 7 6.4458 0.5665 -1.3257 21 6 6.3641 -0.8011 -0.8066 22 1 -0.3634 0.4684 -0.9147 23 1 -0.3633 0.5579 0.8630 24 1 -0.3634 -1.0264 0.0517 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 -0.9956 3.6613 0.2113 28 1 3.7416 -0.4517 0.7797 29 1 5.1862 0.5865 0.8295 30 1 3.8145 0.9173 1.9148 31 1 3.7906 -0.0112 -1.5842 32 1 3.3692 1.6103 -2.1852 33 1 6.3172 -1.5034 -1.6388 34 1 7.2454 -1.0132 -0.2013 35 1 5.4687 -0.9041 -0.1935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707511390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:46 Heat of formation + Delta-G solvation = 127.667178 kcal Electronic energy + Delta-G solvation = -17759.362981 eV Core-core repulsion = 15023.856106 eV Total energy + Delta-G solvation = -2735.506875 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.89106 -37.84896 -35.44742 -33.66812 -32.07140 -30.95188 -28.90273 -27.27024 -26.67022 -24.55810 -23.15045 -22.66739 -21.31364 -19.21234 -17.33405 -17.17902 -16.47585 -15.29641 -14.67723 -14.47857 -14.27005 -13.78516 -13.64437 -13.51326 -13.03016 -12.44680 -12.38168 -11.92039 -11.73158 -11.36309 -11.05131 -10.99341 -10.86662 -10.80138 -10.66139 -10.59237 -10.40353 -9.99705 -9.82130 -9.56084 -9.11701 -8.47749 -7.42894 -6.11116 -4.12304 1.45955 2.17441 2.55070 3.26812 3.34376 3.36163 4.23957 4.30787 4.37482 4.74769 4.79512 4.92466 5.08701 5.30971 5.51875 5.66824 5.69739 5.84663 5.92206 5.99542 6.13059 6.17708 6.36293 6.41933 6.46117 6.75675 6.98933 7.03108 7.25626 7.48825 7.71469 7.90155 8.08746 8.38934 8.89703 8.92858 9.50057 10.97254 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.006715 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.906594 B = 4168.895418 C = 4444.295762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.203 3.797 4 H 0.078 0.922 5 C -0.497 4.497 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.521 5.521 14 C 0.021 3.979 15 C 0.128 3.872 16 C 0.213 3.787 17 N -0.292 5.292 18 N -0.082 5.082 19 N -0.111 5.111 20 N -0.313 5.313 21 C 0.071 3.929 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.044 0.956 26 H 0.020 0.980 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 -10.427 -1.371 12.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.098 3.902 4 H 0.096 0.904 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.245 5.245 14 C -0.128 4.128 15 C -0.004 4.004 16 C -0.065 4.065 17 N -0.142 5.142 18 N -0.077 5.077 19 N -0.097 5.097 20 N -0.116 5.116 21 C -0.071 4.071 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.409 -8.981 -1.720 11.770 hybrid contribution -1.199 -1.176 1.073 1.993 sum 6.210 -10.157 -0.647 11.923 Atomic orbital electron populations 1.21441 0.95513 0.97621 1.03405 1.22253 0.97435 1.00730 0.97595 1.19735 0.78714 0.91231 1.00531 0.90442 1.20849 1.07493 1.30331 0.94937 0.92515 1.24877 0.97046 0.95093 0.96205 1.69909 1.17923 1.38638 1.25761 0.86627 0.77928 0.79608 0.84046 1.20579 1.21187 1.19946 1.62657 1.13264 1.49868 0.98712 1.22534 0.96812 0.94703 0.98726 1.20665 0.83612 0.99385 0.96731 1.26391 0.95283 0.87018 0.97828 1.75057 1.01288 1.18932 1.18881 1.78564 1.06222 1.08386 1.14485 1.78765 1.11111 1.02806 1.17021 1.48380 1.04545 1.15217 1.43438 1.22549 1.06733 0.76356 1.01445 0.93306 0.91158 0.96431 0.93693 0.96084 0.92746 0.95731 0.94483 0.90115 0.93064 0.86975 0.88797 0.87723 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.21 37.16 0.34 -2.12 16 2 C -0.14 -2.70 4.53 -26.73 -0.12 -2.82 16 3 C 0.20 4.48 1.96 -68.86 -0.14 4.34 16 4 H 0.08 1.95 6.91 -51.93 -0.36 1.60 16 5 C -0.50 -12.47 7.57 -34.44 -0.26 -12.73 16 6 H 0.06 1.44 6.50 -52.48 -0.34 1.10 16 7 C 0.07 1.83 4.16 -17.82 -0.07 1.75 16 8 N -0.88 -23.56 12.21 55.43 0.68 -22.89 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.52 -10.15 4.65 -237.73 -1.11 -11.25 16 14 C 0.02 0.34 7.25 60.07 0.44 0.78 16 15 C 0.13 2.10 4.75 -4.97 -0.02 2.07 16 16 C 0.21 3.62 6.88 -155.42 -1.07 2.55 16 17 N -0.29 -5.80 12.36 32.70 0.40 -5.39 16 18 N -0.08 -1.59 13.43 60.35 0.81 -0.78 16 19 N -0.11 -1.87 13.29 60.35 0.80 -1.06 16 20 N -0.31 -4.52 3.44 -65.02 -0.22 -4.74 16 21 C 0.07 0.62 10.30 59.85 0.62 1.23 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.59 6.25 -51.93 -0.32 1.27 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.84 6.57 -51.93 -0.34 0.50 16 26 H 0.02 0.35 6.93 -51.93 -0.36 -0.01 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.02 0.35 5.77 -51.93 -0.30 0.05 16 29 H 0.04 0.55 5.36 -51.93 -0.28 0.27 16 30 H 0.08 1.47 6.61 -51.93 -0.34 1.13 16 31 H 0.05 0.70 6.83 -51.93 -0.35 0.34 16 32 H 0.11 1.92 7.83 -51.93 -0.41 1.51 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.11 0.93 4.71 -51.93 -0.24 0.69 16 LS Contribution 278.01 15.07 4.19 4.19 Total: -1.00 -29.51 278.01 -4.24 -33.75 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.48 Total: -2.22 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.29 Total: -4.94 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 1.36 Total: -46.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.51 -4.24 -33.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707511390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.416 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds