Wall clock time and date at job start Mon Mar 30 2020 21:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47068 * 2 1 4 4 H 1.09000 * 109.47372 * 303.94939 * 3 2 1 5 5 C 1.50696 * 109.47118 * 63.95304 * 3 2 1 6 6 H 1.08003 * 119.99990 * 84.56855 * 5 3 2 7 7 C 1.37874 * 120.00032 * 264.56534 * 5 3 2 8 8 N 1.31517 * 120.00050 * 353.51053 * 7 5 3 9 9 Si 1.86802 * 120.00283 * 173.50974 * 7 5 3 10 10 H 1.48497 * 109.46916 * 90.00115 * 9 7 5 11 11 H 1.48495 * 109.47401 * 210.00442 * 9 7 5 12 12 H 1.48504 * 109.46875 * 330.00347 * 9 7 5 13 13 N 1.46908 * 109.47132 * 183.95125 * 3 2 1 14 14 C 1.46904 * 110.99759 * 308.40760 * 13 3 2 15 15 C 1.46903 * 110.99586 * 72.35749 * 13 3 2 16 16 C 1.50698 * 109.46589 * 166.77211 * 15 13 3 17 17 N 1.31078 * 126.66086 * 269.68214 * 16 15 13 18 18 N 1.28838 * 107.99319 * 179.89810 * 17 16 15 19 19 N 1.28747 * 109.39607 * 0.37775 * 18 17 16 20 20 N 1.29015 * 108.80728 * 359.76862 * 19 18 17 21 21 C 1.46504 * 126.43635 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.47413 * 62.88405 * 1 2 3 23 23 H 1.09002 * 109.47128 * 302.88175 * 1 2 3 24 24 H 1.09001 * 109.47259 * 182.88204 * 1 2 3 25 25 H 1.09001 * 109.47084 * 120.00083 * 2 1 3 26 26 H 1.09004 * 109.47022 * 239.99822 * 2 1 3 27 27 H 0.96999 * 120.00165 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47063 * 59.99882 * 14 13 3 29 29 H 1.08996 * 109.46761 * 179.97438 * 14 13 3 30 30 H 1.08993 * 109.46858 * 299.99382 * 14 13 3 31 31 H 1.09004 * 109.47170 * 286.76947 * 15 13 3 32 32 H 1.08996 * 109.47608 * 46.77178 * 15 13 3 33 33 H 1.09000 * 109.46797 * 270.02025 * 21 20 19 34 34 H 1.08997 * 109.46852 * 30.01948 * 21 20 19 35 35 H 1.09003 * 109.47129 * 150.02631 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6200 1.9763 -0.8525 5 6 1.6192 2.1240 1.2765 6 1 2.2171 2.0150 2.1693 7 6 0.4710 2.8868 1.3046 8 7 -0.1876 3.1250 0.1914 9 14 -0.1493 3.5818 2.9238 10 1 0.4493 4.9220 3.1488 11 1 -1.6286 3.7019 2.8766 12 1 0.2385 2.6738 4.0331 13 7 3.5059 1.4436 -0.0954 14 6 4.1004 0.5675 0.9229 15 6 3.9460 1.0584 -1.4431 16 6 5.4096 1.3791 -1.6042 17 7 5.9206 2.5014 -2.0484 18 7 7.2038 2.3870 -2.0356 19 7 7.5246 1.2179 -1.6021 20 7 6.4458 0.5665 -1.3257 21 6 6.3641 -0.8011 -0.8066 22 1 -0.3634 0.4684 -0.9147 23 1 -0.3633 0.5579 0.8630 24 1 -0.3634 -1.0264 0.0517 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 -0.9956 3.6613 0.2113 28 1 3.7416 -0.4517 0.7797 29 1 5.1862 0.5865 0.8295 30 1 3.8145 0.9173 1.9148 31 1 3.7906 -0.0112 -1.5842 32 1 3.3692 1.6103 -2.1852 33 1 6.3172 -1.5034 -1.6388 34 1 7.2454 -1.0132 -0.2013 35 1 5.4687 -0.9041 -0.1935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707511390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:46 Heat of formation + Delta-G solvation = 106.239299 kcal Electronic energy + Delta-G solvation = -17760.292164 eV Core-core repulsion = 15023.856106 eV Total energy + Delta-G solvation = -2736.436058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.18233 -39.35269 -36.64810 -35.27087 -33.66842 -32.53524 -29.96641 -28.76912 -28.05528 -26.21615 -24.51573 -24.10575 -22.65788 -20.82521 -18.60630 -18.39257 -18.15135 -16.87313 -16.20138 -15.95286 -15.74751 -15.07038 -14.91369 -14.60264 -14.41235 -14.06397 -13.47060 -13.34438 -13.23518 -12.92410 -12.80206 -12.58804 -12.44359 -12.19087 -12.13562 -12.02892 -11.80262 -11.65523 -11.35171 -11.10442 -10.89509 -10.40509 -8.87172 -8.05492 -6.10292 0.20531 1.11691 1.18842 1.42837 1.46830 1.53079 2.46563 2.96681 3.19192 3.26869 3.57978 3.91170 4.19988 4.27777 4.36045 4.40614 4.49033 4.52340 4.59087 4.65715 4.71767 4.79387 4.86325 5.04878 5.21597 5.26240 5.34189 5.44660 5.70054 5.76184 5.87568 6.14833 6.53497 6.67855 7.00598 7.54264 7.57277 9.01741 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.006715 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.906594 B = 4168.895418 C = 4444.295762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C 0.210 3.790 4 H 0.039 0.961 5 C -0.505 4.505 6 H 0.050 0.950 7 C 0.029 3.971 8 N -0.912 5.912 9 Si 0.937 3.063 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.550 5.550 14 C 0.026 3.974 15 C 0.136 3.864 16 C 0.209 3.791 17 N -0.330 5.330 18 N -0.114 5.114 19 N -0.106 5.106 20 N -0.296 5.296 21 C 0.054 3.946 22 H 0.030 0.970 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.259 0.741 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -13.029 -0.918 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.171 4.171 3 C 0.104 3.896 4 H 0.057 0.943 5 C -0.543 4.543 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.214 1.214 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.274 5.274 14 C -0.122 4.122 15 C 0.005 3.995 16 C -0.070 4.070 17 N -0.180 5.180 18 N -0.107 5.107 19 N -0.092 5.092 20 N -0.099 5.099 21 C -0.084 4.084 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.249 -11.615 -1.248 14.301 hybrid contribution -1.371 -0.461 0.940 1.725 sum 6.878 -12.076 -0.308 13.901 Atomic orbital electron populations 1.21356 0.96353 0.98722 1.01051 1.22096 0.96577 0.98938 0.99508 1.19427 0.80339 0.92372 0.97417 0.94263 1.21177 1.07106 1.30012 0.96048 0.93214 1.25433 0.97572 0.95844 0.98251 1.70018 1.18276 1.39734 1.27063 0.85884 0.77375 0.78598 0.81693 1.21413 1.21061 1.19165 1.62309 1.11846 1.52308 1.00960 1.22513 0.97656 0.95440 0.96603 1.20589 0.82976 1.01371 0.94613 1.26287 0.95735 0.86907 0.98035 1.74965 1.01842 1.20968 1.20262 1.78541 1.06230 1.09676 1.16296 1.78663 1.11837 1.02364 1.16370 1.48734 1.03093 1.16414 1.41627 1.23138 1.08260 0.73807 1.03232 0.95086 0.94215 0.93390 0.92511 0.93027 0.93165 0.92839 0.92785 0.92371 0.89108 0.88424 0.85444 0.85457 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.21 71.98 0.66 -3.89 16 2 C -0.13 -4.73 4.53 30.59 0.14 -4.59 16 3 C 0.21 9.16 1.96 44.16 0.09 9.25 16 4 H 0.04 2.02 6.91 -2.39 -0.02 2.00 16 5 C -0.50 -25.34 7.57 25.60 0.19 -25.15 16 6 H 0.05 2.52 6.50 -2.91 -0.02 2.50 16 7 C 0.03 1.51 4.16 84.65 0.35 1.86 16 8 N -0.91 -49.72 12.21 21.45 0.26 -49.46 16 9 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.55 -20.60 4.65 -906.04 -4.21 -24.82 16 14 C 0.03 0.77 7.25 127.69 0.93 1.70 16 15 C 0.14 4.17 4.75 85.56 0.41 4.58 16 16 C 0.21 6.72 6.88 138.13 0.95 7.67 16 17 N -0.33 -13.02 12.36 -50.45 -0.62 -13.64 16 18 N -0.11 -4.33 13.43 37.01 0.50 -3.84 16 19 N -0.11 -3.35 13.29 37.02 0.49 -2.86 16 20 N -0.30 -7.64 3.44 -359.63 -1.24 -8.87 16 21 C 0.05 0.69 10.30 127.77 1.32 2.01 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.04 1.77 6.25 -2.39 -0.01 1.76 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 26 H 0.05 1.54 6.93 -2.38 -0.02 1.53 16 27 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.05 1.29 5.77 -2.39 -0.01 1.28 16 29 H 0.05 1.42 5.36 -2.39 -0.01 1.41 16 30 H 0.06 2.02 6.61 -2.39 -0.02 2.00 16 31 H 0.09 2.06 6.83 -2.38 -0.02 2.04 16 32 H 0.10 3.30 7.83 -2.39 -0.02 3.28 16 33 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.37 4.71 -2.39 -0.01 1.36 16 Total: -1.00 -65.75 278.01 3.34 -62.41 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.10 Total: 3.42 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.03 Total: -6.56 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.82 Total: -103.49 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -65.75 3.34 -62.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707511390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.652 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds