Wall clock time and date at job start Mon Mar 30 2020 21:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 N 1.46901 * 109.47172 * 119.99726 * 2 1 3 5 5 C 1.46896 * 111.00060 * 146.16077 * 4 2 1 6 6 C 1.50709 * 109.47228 * 288.39048 * 5 4 2 7 7 H 1.08000 * 119.99692 * 4.70314 * 6 5 4 8 8 C 1.37872 * 119.99910 * 184.69240 * 6 5 4 9 9 N 1.31516 * 120.00415 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99644 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46940 * 90.00868 * 10 8 6 12 12 H 1.48498 * 109.46974 * 210.00421 * 10 8 6 13 13 H 1.48493 * 109.47413 * 330.00680 * 10 8 6 14 14 C 1.46897 * 111.00099 * 270.11971 * 4 2 1 15 15 C 1.52994 * 109.47708 * 76.99391 * 14 4 2 16 16 N 1.46497 * 109.47679 * 173.28425 * 15 14 4 17 17 C 1.34598 * 126.43983 * 124.99148 * 16 15 14 18 18 N 1.31068 * 106.68127 * 180.02562 * 17 16 15 19 19 N 1.28850 * 107.99104 * 0.02562 * 18 17 16 20 20 N 1.28740 * 109.39338 * 359.72835 * 19 18 17 21 21 H 1.08999 * 109.47120 * 307.81586 * 1 2 3 22 22 H 1.09002 * 109.46987 * 67.81671 * 1 2 3 23 23 H 1.09000 * 109.47010 * 187.81032 * 1 2 3 24 24 H 1.08999 * 109.47461 * 240.00103 * 2 1 3 25 25 H 1.08998 * 109.47698 * 173.77957 * 3 2 1 26 26 H 1.08998 * 109.47506 * 293.78625 * 3 2 1 27 27 H 1.09006 * 109.47126 * 53.78472 * 3 2 1 28 28 H 1.08999 * 109.47166 * 48.39269 * 5 4 2 29 29 H 1.09007 * 109.47100 * 168.39556 * 5 4 2 30 30 H 0.96999 * 120.00012 * 180.02562 * 9 8 6 31 31 H 1.09007 * 109.47126 * 196.99631 * 14 4 2 32 32 H 1.09006 * 109.46823 * 316.98854 * 14 4 2 33 33 H 1.09004 * 109.47250 * 293.28880 * 15 14 4 34 34 H 1.09006 * 109.47017 * 53.28493 * 15 14 4 35 35 H 1.08004 * 126.65921 * 0.05347 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.2691 -1.4121 0.9187 6 6 2.9748 -2.6113 0.0545 7 1 1.9745 -2.7760 -0.3179 8 6 3.9826 -3.4978 -0.2607 9 7 5.2006 -3.2973 0.1930 10 14 3.6176 -4.9845 -1.3313 11 1 3.8226 -4.6290 -2.7585 12 1 4.5302 -6.0963 -0.9621 13 1 2.2100 -5.4099 -1.1243 14 6 2.1925 0.2466 2.3158 15 6 0.8262 0.5795 2.9185 16 7 1.0092 1.3861 4.1276 17 6 0.4583 2.5885 4.3775 18 7 0.8791 2.9561 5.5632 19 7 1.6488 2.0280 6.0177 20 7 1.7252 1.0755 5.1550 21 1 -0.3633 0.6301 0.8118 22 1 -0.3633 0.3880 -0.9516 23 1 -0.3633 -1.0181 0.1397 24 1 1.8934 -0.5138 -0.8900 25 1 3.1243 1.4446 0.1113 26 1 1.7704 1.9232 -0.9403 27 1 1.5887 1.9874 0.8292 28 1 3.9607 -0.7499 0.3979 29 1 3.7174 -1.7412 1.8562 30 1 5.9097 -3.9208 -0.0291 31 1 2.8250 -0.2079 3.0784 32 1 2.6618 1.1608 1.9522 33 1 0.2361 1.1402 2.1935 34 1 0.3066 -0.3443 3.1732 35 1 -0.2025 3.1427 3.7274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711929668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:50 Heat of formation + Delta-G solvation = 128.882264 kcal Electronic energy + Delta-G solvation = -17340.506398 eV Core-core repulsion = 14605.052213 eV Total energy + Delta-G solvation = -2735.454185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.09903 -38.53002 -35.50379 -32.99088 -32.37964 -31.32535 -29.83282 -27.21119 -26.34075 -24.15360 -23.73307 -22.18909 -21.85918 -19.19470 -17.59144 -17.01660 -16.30261 -15.95253 -15.85918 -14.81096 -14.36403 -13.79545 -13.62173 -13.09289 -12.97216 -12.44488 -12.28917 -12.14537 -12.08082 -11.81114 -11.15976 -11.13659 -11.03558 -10.96815 -10.71703 -10.61916 -10.54682 -10.29214 -10.16876 -9.88579 -9.35591 -8.53374 -7.53002 -6.11133 -4.13482 1.32329 2.05942 2.28575 3.26025 3.33336 3.36514 4.17178 4.23516 4.34342 4.61928 4.86463 4.97461 5.18199 5.24728 5.30637 5.39734 5.43898 5.63985 5.65720 5.80909 5.90421 5.97410 6.00283 6.04794 6.22982 6.26717 6.56929 6.59752 7.09701 7.16932 7.67364 7.92590 8.01896 8.35821 8.65625 8.93380 9.51187 10.99452 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.005655 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.444948 B = 4949.926311 C = 5403.600720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 C -0.176 4.176 4 N -0.524 5.524 5 C 0.195 3.805 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.031 3.969 15 C 0.109 3.891 16 N -0.297 5.297 17 C 0.151 3.849 18 N -0.314 5.314 19 N -0.087 5.087 20 N -0.084 5.084 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.048 0.952 28 H -0.008 1.008 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.419 9.834 0.472 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.235 4.235 4 N -0.249 5.249 5 C 0.071 3.929 6 C -0.547 4.547 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.099 4.099 15 C -0.011 4.011 16 N -0.100 5.100 17 C -0.148 4.148 18 N -0.163 5.163 19 N -0.081 5.081 20 N -0.071 5.071 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.010 0.990 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.850 9.216 1.800 13.609 hybrid contribution 0.023 -0.207 -1.818 1.830 sum -9.827 9.009 -0.018 13.332 Atomic orbital electron populations 1.22002 0.95747 1.02155 0.99968 1.21754 0.94702 0.91857 0.95489 1.22437 1.01532 0.98547 1.00971 1.62210 1.34818 1.24108 1.03726 1.19812 0.83662 0.92335 0.97117 1.21095 0.95681 1.07603 1.30347 0.91776 1.24982 0.94982 0.98171 0.96369 1.69950 1.00968 1.37444 1.45236 0.86494 0.78276 0.82246 0.80384 1.20747 1.21227 1.19747 1.22457 0.93259 0.97719 0.96449 1.22843 1.01933 0.96150 0.80194 1.48950 1.30137 1.15359 1.15554 1.27654 1.02360 0.87647 0.97156 1.74940 1.11080 1.22508 1.07793 1.78632 1.13508 0.95852 1.20101 1.78942 1.13090 1.21852 0.93174 0.93868 0.93094 0.91545 0.88785 0.92508 0.92616 0.93321 0.99032 0.94724 0.92789 0.89687 0.93191 0.86809 0.86762 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.06 37.16 0.34 -1.40 16 2 C 0.07 1.11 2.61 -67.71 -0.18 0.93 16 3 C -0.18 -2.35 7.77 37.16 0.29 -2.06 16 4 N -0.52 -9.60 4.27 -228.08 -0.97 -10.57 16 5 C 0.20 4.68 4.65 -4.97 -0.02 4.65 16 6 C -0.51 -13.35 8.35 -34.44 -0.29 -13.64 16 7 H 0.06 1.65 7.73 -52.49 -0.41 1.25 16 8 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 10 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.03 0.48 4.68 -3.83 -0.02 0.46 16 15 C 0.11 1.27 5.76 -4.05 -0.02 1.25 16 16 N -0.30 -3.78 3.44 -62.55 -0.22 -4.00 16 17 C 0.15 1.62 12.79 -90.39 -1.16 0.46 16 18 N -0.31 -4.56 12.36 29.59 0.37 -4.19 16 19 N -0.09 -1.45 13.43 60.35 0.81 -0.64 16 20 N -0.08 -1.36 12.96 60.35 0.78 -0.57 16 21 H 0.04 0.42 5.14 -51.93 -0.27 0.16 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16 25 H 0.06 0.87 7.53 -51.93 -0.39 0.47 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.54 5.75 -51.93 -0.30 0.25 16 28 H -0.01 -0.21 7.93 -51.93 -0.41 -0.62 16 29 H 0.03 0.92 7.68 -51.93 -0.40 0.52 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.08 1.51 7.47 -51.93 -0.39 1.12 16 32 H 0.05 0.75 5.10 -51.93 -0.26 0.49 16 33 H 0.11 0.99 4.52 -51.93 -0.23 0.76 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.23 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -30.74 286.52 -5.03 -35.77 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.67 Total: -2.95 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.16 Total: -7.89 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.51 Total: -45.05 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.74 -5.03 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711929668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.652 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds