Wall clock time and date at job start Mon Mar 30 2020 21:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 N 1.46901 * 109.47172 * 119.99726 * 2 1 3 5 5 C 1.46896 * 111.00060 * 146.16077 * 4 2 1 6 6 C 1.50709 * 109.47228 * 288.39048 * 5 4 2 7 7 H 1.08000 * 119.99692 * 4.70314 * 6 5 4 8 8 C 1.37872 * 119.99910 * 184.69240 * 6 5 4 9 9 N 1.31516 * 120.00415 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99644 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46940 * 90.00868 * 10 8 6 12 12 H 1.48498 * 109.46974 * 210.00421 * 10 8 6 13 13 H 1.48493 * 109.47413 * 330.00680 * 10 8 6 14 14 C 1.46897 * 111.00099 * 270.11971 * 4 2 1 15 15 C 1.52994 * 109.47708 * 76.99391 * 14 4 2 16 16 N 1.46497 * 109.47679 * 173.28425 * 15 14 4 17 17 C 1.34598 * 126.43983 * 124.99148 * 16 15 14 18 18 N 1.31068 * 106.68127 * 180.02562 * 17 16 15 19 19 N 1.28850 * 107.99104 * 0.02562 * 18 17 16 20 20 N 1.28740 * 109.39338 * 359.72835 * 19 18 17 21 21 H 1.08999 * 109.47120 * 307.81586 * 1 2 3 22 22 H 1.09002 * 109.46987 * 67.81671 * 1 2 3 23 23 H 1.09000 * 109.47010 * 187.81032 * 1 2 3 24 24 H 1.08999 * 109.47461 * 240.00103 * 2 1 3 25 25 H 1.08998 * 109.47698 * 173.77957 * 3 2 1 26 26 H 1.08998 * 109.47506 * 293.78625 * 3 2 1 27 27 H 1.09006 * 109.47126 * 53.78472 * 3 2 1 28 28 H 1.08999 * 109.47166 * 48.39269 * 5 4 2 29 29 H 1.09007 * 109.47100 * 168.39556 * 5 4 2 30 30 H 0.96999 * 120.00012 * 180.02562 * 9 8 6 31 31 H 1.09007 * 109.47126 * 196.99631 * 14 4 2 32 32 H 1.09006 * 109.46823 * 316.98854 * 14 4 2 33 33 H 1.09004 * 109.47250 * 293.28880 * 15 14 4 34 34 H 1.09006 * 109.47017 * 53.28493 * 15 14 4 35 35 H 1.08004 * 126.65921 * 0.05347 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.2691 -1.4121 0.9187 6 6 2.9748 -2.6113 0.0545 7 1 1.9745 -2.7760 -0.3179 8 6 3.9826 -3.4978 -0.2607 9 7 5.2006 -3.2973 0.1930 10 14 3.6176 -4.9845 -1.3313 11 1 3.8226 -4.6290 -2.7585 12 1 4.5302 -6.0963 -0.9621 13 1 2.2100 -5.4099 -1.1243 14 6 2.1925 0.2466 2.3158 15 6 0.8262 0.5795 2.9185 16 7 1.0092 1.3861 4.1276 17 6 0.4583 2.5885 4.3775 18 7 0.8791 2.9561 5.5632 19 7 1.6488 2.0280 6.0177 20 7 1.7252 1.0755 5.1550 21 1 -0.3633 0.6301 0.8118 22 1 -0.3633 0.3880 -0.9516 23 1 -0.3633 -1.0181 0.1397 24 1 1.8934 -0.5138 -0.8900 25 1 3.1243 1.4446 0.1113 26 1 1.7704 1.9232 -0.9403 27 1 1.5887 1.9874 0.8292 28 1 3.9607 -0.7499 0.3979 29 1 3.7174 -1.7412 1.8562 30 1 5.9097 -3.9208 -0.0291 31 1 2.8250 -0.2079 3.0784 32 1 2.6618 1.1608 1.9522 33 1 0.2361 1.1402 2.1935 34 1 0.3066 -0.3443 3.1732 35 1 -0.2025 3.1427 3.7274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711929668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:49 Heat of formation + Delta-G solvation = 107.178133 kcal Electronic energy + Delta-G solvation = -17341.447560 eV Core-core repulsion = 14605.052213 eV Total energy + Delta-G solvation = -2736.395347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.14277 -39.86809 -36.62572 -34.94826 -33.44037 -32.65581 -31.23627 -28.40288 -27.91356 -25.45960 -24.73611 -23.95360 -22.98742 -20.48184 -18.71013 -18.34162 -17.99922 -17.19646 -16.87483 -16.51037 -15.81300 -15.14301 -14.91794 -14.30227 -14.13469 -14.03902 -13.65156 -13.40312 -13.27118 -13.06743 -12.74248 -12.69598 -12.39676 -12.17013 -12.16856 -12.08287 -11.75879 -11.57697 -11.40382 -11.37587 -11.20747 -10.62109 -9.06630 -8.20139 -6.30121 0.32860 1.10163 1.25247 1.41718 1.43318 1.54412 2.40245 3.10796 3.17048 3.33593 3.53230 3.84238 3.87116 4.08438 4.22356 4.28506 4.40917 4.50734 4.55599 4.71456 4.80405 4.88366 4.89703 5.03245 5.06345 5.16942 5.26720 5.31030 5.41328 5.62977 5.67441 6.05057 6.34421 6.56873 6.86263 7.39724 7.59637 8.90694 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.005655 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.444948 B = 4949.926311 C = 5403.600720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 C -0.170 4.170 4 N -0.526 5.526 5 C 0.211 3.789 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.000 4.000 9 N -0.938 5.938 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.033 3.967 15 C 0.123 3.877 16 N -0.300 5.300 17 C 0.180 3.820 18 N -0.343 5.343 19 N -0.115 5.115 20 N -0.120 5.120 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.077 0.923 27 H 0.079 0.921 28 H -0.037 1.037 29 H -0.002 1.002 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.158 0.842 34 H 0.115 0.885 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.441 11.083 -0.799 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 C -0.228 4.228 4 N -0.250 5.250 5 C 0.085 3.915 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.198 4.198 9 N -0.579 5.579 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.186 1.186 14 C -0.097 4.097 15 C 0.003 3.997 16 N -0.102 5.102 17 C -0.117 4.117 18 N -0.192 5.192 19 N -0.109 5.109 20 N -0.107 5.107 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.098 0.902 28 H -0.020 1.020 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.133 0.867 35 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -12.899 10.483 0.532 16.630 hybrid contribution 0.945 -0.509 -1.445 1.800 sum -11.955 9.974 -0.914 15.596 Atomic orbital electron populations 1.21923 0.92178 1.02286 1.02598 1.21854 0.97340 0.92581 0.92575 1.22369 0.99715 0.97240 1.03508 1.62135 1.31334 1.25751 1.05782 1.19382 0.85582 0.92113 0.94448 1.21447 0.95729 1.08105 1.30102 0.91375 1.25912 0.94735 1.01371 0.97792 1.70094 1.02065 1.38752 1.46952 0.85403 0.78400 0.78282 0.78671 1.19820 1.21316 1.18588 1.22391 0.95730 0.96859 0.94701 1.22766 0.99259 0.97277 0.80385 1.48984 1.30060 1.16167 1.14996 1.28746 1.00563 0.86187 0.96231 1.74878 1.11797 1.22710 1.09807 1.78619 1.14657 0.96609 1.21049 1.78924 1.14750 1.22616 0.94384 0.90459 0.90901 0.93020 0.92556 0.95503 0.90386 0.90212 1.01973 0.98433 0.92834 0.93104 0.92564 0.82429 0.86657 0.69265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.06 71.98 0.65 -2.08 16 2 C 0.06 1.94 2.61 44.91 0.12 2.06 16 3 C -0.17 -4.10 7.77 71.98 0.56 -3.54 16 4 N -0.53 -19.34 4.27 -875.51 -3.74 -23.08 16 5 C 0.21 10.65 4.65 85.56 0.40 11.05 16 6 C -0.52 -27.82 8.35 25.60 0.21 -27.60 16 7 H 0.07 3.54 7.73 -2.91 -0.02 3.52 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -56.03 13.29 21.45 0.28 -55.74 16 10 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 C 0.03 1.00 4.68 86.30 0.40 1.40 16 15 C 0.12 2.47 5.76 86.38 0.50 2.96 16 16 N -0.30 -6.85 3.44 -351.82 -1.21 -8.06 16 17 C 0.18 3.13 12.79 180.27 2.31 5.44 16 18 N -0.34 -9.26 12.36 -60.29 -0.74 -10.00 16 19 N -0.12 -3.82 13.43 37.01 0.50 -3.32 16 20 N -0.12 -3.82 12.96 37.02 0.48 -3.34 16 21 H 0.08 1.04 5.14 -2.39 -0.01 1.02 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 2.11 7.01 -2.39 -0.02 2.09 16 25 H 0.03 0.80 7.53 -2.39 -0.02 0.78 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.41 5.75 -2.38 -0.01 1.39 16 28 H -0.04 -2.06 7.93 -2.39 -0.02 -2.08 16 29 H 0.00 -0.14 7.68 -2.38 -0.02 -0.16 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.05 1.90 7.47 -2.38 -0.02 1.88 16 32 H 0.06 1.64 5.10 -2.38 -0.01 1.63 16 33 H 0.16 1.75 4.52 -2.39 -0.01 1.74 16 34 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.29 0.88 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -72.86 286.52 4.29 -68.56 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.09 Total: -0.34 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.61 Total: -9.87 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -4.43 Total: -103.53 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.86 4.29 -68.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711929668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.742 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds