Wall clock time and date at job start Mon Mar 30 2020 21:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99984 * 2 1 4 4 H 1.48498 * 109.46984 * 239.99942 * 3 2 1 5 5 H 1.48498 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47183 * 120.00108 * 3 2 1 7 7 C 1.38956 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99903 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99459 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00293 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99549 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46931 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00032 * 180.02562 * 13 12 10 15 15 C 1.56235 * 116.69133 * 62.42250 * 14 13 12 16 16 C 1.54662 * 103.21547 * 158.95919 * 15 14 13 17 17 N 1.49514 * 105.28082 * 0.66031 * 16 15 14 18 18 C 1.49516 * 105.92738 * 71.26365 * 17 16 15 19 19 C 1.54664 * 105.28583 * 288.73644 * 18 17 16 20 20 C 1.50461 * 102.03808 * 324.84801 * 17 16 15 21 21 H 0.96996 * 119.99478 * 359.97438 * 1 2 3 22 22 H 0.96994 * 119.99822 * 0.02562 * 9 7 2 23 23 H 1.08997 * 109.46661 * 60.00155 * 12 10 9 24 24 H 1.08997 * 109.47066 * 299.99856 * 12 10 9 25 25 H 1.00893 * 111.00033 * 56.04346 * 13 12 10 26 26 H 1.09006 * 110.67005 * 277.39063 * 15 14 13 27 27 H 1.09001 * 110.67057 * 40.52945 * 15 14 13 28 28 H 1.08993 * 110.28045 * 241.70438 * 16 15 14 29 29 H 1.09003 * 110.27832 * 119.61042 * 16 15 14 30 30 H 1.09001 * 110.28234 * 47.68457 * 18 17 16 31 31 H 1.08996 * 110.28422 * 169.78584 * 18 17 16 32 32 H 1.09000 * 110.67226 * 240.91243 * 19 18 17 33 33 H 1.08999 * 110.67119 * 117.76610 * 19 18 17 34 34 H 1.09003 * 111.91143 * 297.81337 * 20 17 16 35 35 H 1.08997 * 111.91253 * 171.59655 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0037 14 6 1.4982 -7.2708 -0.0049 15 6 0.5960 -7.5788 -1.2427 16 6 0.4713 -9.1201 -1.2147 17 7 1.2542 -9.5571 -0.0181 18 6 0.4554 -9.1323 1.1723 19 6 0.5795 -7.5913 1.2178 20 6 2.3869 -8.5668 -0.0055 21 1 -0.4849 0.8401 0.0004 22 1 0.3534 -2.3906 -0.0024 23 1 0.6169 -4.9200 -0.8930 24 1 0.6175 -4.9213 0.8870 25 1 2.8333 -5.9128 0.7776 26 1 -0.3825 -7.1115 -1.1314 27 1 1.0789 -7.2486 -2.1625 28 1 0.8960 -9.5501 -2.1217 29 1 -0.5735 -9.4128 -1.1101 30 1 -0.5878 -9.4238 1.0509 31 1 0.8681 -9.5715 2.0805 32 1 1.0501 -7.2704 2.1471 33 1 -0.3974 -7.1229 1.0981 34 1 3.0002 -8.6389 -0.9038 35 1 2.9882 -8.6481 0.9000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715715168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:51 Heat of formation + Delta-G solvation = -11.784247 kcal Electronic energy + Delta-G solvation = -17174.534925 eV Core-core repulsion = 14400.688231 eV Total energy + Delta-G solvation = -2773.846694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86081 -38.18489 -34.69944 -33.74767 -31.24189 -30.74203 -29.20691 -28.29145 -25.99422 -23.90130 -22.55268 -21.12070 -19.36299 -18.71086 -17.88521 -16.63966 -16.10420 -15.46274 -15.20129 -14.90268 -14.47066 -14.10539 -13.58121 -13.04621 -12.88813 -12.63481 -12.40770 -12.27007 -11.79082 -11.62130 -11.52863 -11.37991 -11.32738 -11.03106 -10.57233 -10.45258 -10.34828 -10.22697 -9.51762 -9.14914 -8.47406 -8.11929 -7.98110 -6.43238 -3.84225 3.19288 3.25070 3.29473 3.77769 3.88828 3.98597 4.22729 4.42558 4.58314 4.87714 4.97593 5.04542 5.08079 5.14697 5.23629 5.43834 5.48596 5.52315 5.69240 5.70710 5.76214 5.80681 5.85597 5.91054 5.99070 6.12843 6.21779 6.37325 6.52862 7.18826 7.53593 7.59521 8.04117 8.59159 9.15940 9.51998 10.03304 10.74423 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059270 B = 0.004589 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.304520 B = 6100.448664 C = 6239.195734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.629 5.629 14 C 0.075 3.925 15 C -0.141 4.141 16 C 0.014 3.986 17 N -0.468 5.468 18 C 0.017 3.983 19 C -0.183 4.183 20 C 0.021 3.979 21 H 0.272 0.728 22 H 0.392 0.608 23 H 0.086 0.914 24 H 0.044 0.956 25 H 0.354 0.646 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -15.037 0.739 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.080 4.080 13 N -0.259 5.259 14 C -0.019 4.019 15 C -0.180 4.180 16 C -0.115 4.115 17 N -0.188 5.188 18 C -0.113 4.113 19 C -0.224 4.224 20 C -0.108 4.108 21 H 0.082 0.918 22 H 0.225 0.775 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.175 0.825 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.995 -15.585 0.050 15.712 hybrid contribution -0.992 1.835 0.958 2.295 sum -2.986 -13.750 1.008 14.106 Atomic orbital electron populations 1.69603 1.05962 1.28299 1.50464 1.25266 0.95631 0.99738 0.97231 0.85908 0.78764 0.80394 0.79106 1.19848 1.20959 1.19892 1.19665 0.93366 0.82221 1.47770 0.87940 1.41847 1.09188 1.04587 1.64276 1.19788 0.88379 0.84703 0.84621 1.90524 1.13717 1.87051 1.55460 1.21657 0.94390 0.90636 1.01270 1.59851 1.17392 0.98165 1.50519 1.23937 0.93074 0.90875 0.94062 1.23183 0.99565 0.96360 0.98889 1.23562 0.98876 0.93655 0.95401 1.70004 1.05705 1.40903 1.02200 1.23498 0.98811 0.93478 0.95469 1.23859 1.01232 0.97352 0.99964 1.24465 0.94626 0.88538 1.03177 0.91797 0.77472 0.89605 0.93762 0.82515 0.91314 0.90238 0.89862 0.90739 0.90748 0.90125 0.91342 0.91106 0.88904 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C 0.44 10.43 7.82 -10.98 -0.09 10.35 16 11 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 12 C 0.05 0.94 5.87 -4.97 -0.03 0.91 16 13 N -0.63 -10.26 6.32 -95.49 -0.60 -10.86 16 14 C 0.08 0.97 1.46 -125.87 -0.18 0.78 16 15 C -0.14 -1.66 5.42 -24.12 -0.13 -1.79 16 16 C 0.01 0.15 6.61 -1.49 -0.01 0.14 16 17 N -0.47 -5.26 6.94 -222.07 -1.54 -6.80 16 18 C 0.02 0.17 6.61 -1.49 -0.01 0.16 16 19 C -0.18 -2.08 5.47 -24.11 -0.13 -2.22 16 20 C 0.02 0.25 6.69 0.43 0.00 0.26 16 21 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 23 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 24 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 25 H 0.35 5.94 8.52 -39.30 -0.33 5.61 16 26 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 30 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -30.32 286.30 -8.02 -38.34 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.10 Total: 12.44 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.82 Total: 0.55 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -1.48 Total: -55.87 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.81 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.32 -8.02 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715715168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.557 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds