Wall clock time and date at job start Mon Mar 30 2020 21:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99998 * 2 1 4 4 C 1.50696 * 109.47370 * 270.00124 * 3 2 1 5 5 H 1.08002 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99928 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99770 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47024 * 59.99939 * 8 6 4 10 10 H 1.48497 * 109.46895 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47136 * 299.99676 * 8 6 4 12 12 C 1.34774 * 120.00028 * 180.02562 * 2 1 3 13 13 O 1.21616 * 120.00017 * 179.97438 * 12 2 1 14 14 C 1.47095 * 119.99976 * 359.97438 * 12 2 1 15 15 C 1.32998 * 120.00229 * 180.02562 * 14 12 2 16 16 C 1.50700 * 120.00250 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.99258 * 358.91870 * 16 15 14 18 18 C 1.54106 * 109.87705 * 120.00090 * 16 15 14 19 19 C 1.54810 * 104.18526 * 121.45668 * 18 16 15 20 20 C 1.54991 * 102.09350 * 20.88072 * 19 18 16 21 21 O 1.43745 * 109.87960 * 237.82921 * 16 15 14 22 22 H 1.08998 * 109.46928 * 270.00017 * 1 2 3 23 23 H 1.09004 * 109.47256 * 29.99618 * 1 2 3 24 24 H 1.08998 * 109.47461 * 150.00030 * 1 2 3 25 25 H 1.09002 * 109.47014 * 30.00507 * 3 2 1 26 26 H 1.08997 * 109.46851 * 150.00390 * 3 2 1 27 27 H 0.97002 * 119.99925 * 180.02562 * 7 6 4 28 28 H 1.07997 * 120.00499 * 0.02562 * 14 12 2 29 29 H 1.08003 * 119.99945 * 359.97438 * 15 14 12 30 30 H 1.09000 * 110.48246 * 240.13278 * 18 16 15 31 31 H 1.08996 * 110.48742 * 2.64530 * 18 16 15 32 32 H 1.09005 * 110.90592 * 139.08047 * 19 18 16 33 33 H 1.09005 * 110.90412 * 262.68111 * 19 18 16 34 34 H 1.08993 * 110.62131 * 81.47823 * 20 19 18 35 35 H 1.09004 * 110.61350 * 204.31822 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8775 -1.6726 7 7 3.5542 3.6176 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.1397 3.5956 -4.1331 10 1 4.1802 4.7032 -3.4338 11 1 4.2393 2.3821 -4.1346 12 6 2.1388 -1.1672 -0.0005 13 8 3.3550 -1.1672 -0.0010 14 6 1.4034 -2.4411 -0.0005 15 6 2.0683 -3.5929 -0.0005 16 6 1.3148 -4.8980 -0.0011 17 1 0.2415 -4.7087 0.0179 18 6 1.6809 -5.7138 -1.2562 19 6 2.2473 -7.0405 -0.6945 20 6 1.6542 -7.0664 0.7372 21 8 1.6933 -5.6814 1.1431 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6084 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 4.0310 4.4436 -0.8502 28 1 0.3234 -2.4412 -0.0005 29 1 3.1483 -3.5929 -0.0009 30 1 0.7935 -5.9031 -1.8603 31 1 2.4367 -5.1921 -1.8433 32 1 1.8946 -7.8916 -1.2771 33 1 3.3366 -7.0164 -0.6639 34 1 0.6278 -7.4329 0.7210 35 1 2.2690 -7.6795 1.3963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819156239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:59 Heat of formation + Delta-G solvation = -63.975500 kcal Electronic energy + Delta-G solvation = -16678.561308 eV Core-core repulsion = 13870.158680 eV Total energy + Delta-G solvation = -2808.402628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66745 -38.79145 -34.84216 -33.59805 -32.53825 -32.15679 -28.94586 -27.59397 -25.79742 -23.99221 -22.57475 -21.71453 -20.26989 -18.32340 -16.92002 -16.50613 -16.41756 -15.64875 -15.49557 -14.88902 -14.32599 -14.15475 -13.82032 -13.22717 -12.84743 -12.45251 -12.17007 -12.04772 -11.91534 -11.76627 -11.47836 -11.44467 -11.13062 -10.94059 -10.85306 -10.52789 -10.14333 -9.91818 -9.63420 -9.23948 -8.94944 -8.40996 -7.59607 -6.01694 -4.06672 1.65622 3.33459 3.37710 3.40848 3.73792 3.95837 4.17978 4.35817 4.46200 4.58342 4.69037 4.85813 5.01380 5.17989 5.29316 5.32041 5.43891 5.46400 5.53895 5.61234 5.73997 5.76742 5.91485 5.98039 6.24219 6.50054 6.58342 6.73801 7.12882 7.47836 7.57383 7.94717 8.26001 8.45450 8.92420 9.12745 9.58179 11.06353 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.039952 B = 0.004582 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.665908 B = 6109.339446 C = 6377.806141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.532 3.468 13 O -0.543 6.543 14 C -0.182 4.182 15 C -0.090 4.090 16 C 0.104 3.896 17 H 0.075 0.925 18 C -0.150 4.150 19 C -0.155 4.155 20 C 0.044 3.956 21 O -0.367 6.367 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -18.631 0.339 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.423 6.423 14 C -0.203 4.203 15 C -0.110 4.110 16 C 0.047 3.953 17 H 0.093 0.907 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.033 4.033 21 O -0.286 6.286 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.460 -18.310 0.595 19.780 hybrid contribution -0.038 0.360 -1.223 1.276 sum -7.499 -17.949 -0.628 19.463 Atomic orbital electron populations 1.21677 0.81416 1.02533 1.00485 1.48069 1.06226 1.07823 1.70706 1.19306 0.92627 0.78038 0.97528 1.21404 1.36596 1.06311 0.92262 0.92505 1.24940 0.95341 0.96368 0.97463 1.69927 1.38338 1.14362 1.30791 0.86546 0.78343 0.77808 0.84643 1.20253 1.21148 1.20183 1.18348 0.87448 0.84101 0.78115 1.90752 1.13619 1.87384 1.50515 1.22983 1.00273 0.93353 1.03691 1.23484 1.01212 0.91894 0.94408 1.21828 0.97710 0.90017 0.85759 0.90698 1.22989 1.02352 0.95643 0.97757 1.23154 1.01909 0.97668 0.96556 1.23564 1.00310 0.84114 0.95272 1.88973 1.90055 1.16396 1.33201 0.93677 0.90753 0.92314 0.94910 0.93759 0.92654 0.85840 0.85145 0.90290 0.89675 0.90173 0.90246 0.92183 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.15 59.84 0.61 1.97 16 2 N -0.60 -13.34 2.86 -184.37 -0.53 -13.87 16 3 C 0.24 6.62 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.53 11.85 7.62 -12.67 -0.10 11.75 16 13 O -0.54 -14.49 15.80 5.26 0.08 -14.41 16 14 C -0.18 -3.00 8.83 -37.81 -0.33 -3.33 16 15 C -0.09 -1.37 8.52 -36.13 -0.31 -1.68 16 16 C 0.10 1.24 3.80 -27.31 -0.10 1.13 16 17 H 0.08 0.78 7.84 -51.93 -0.41 0.38 16 18 C -0.15 -1.42 6.63 -25.20 -0.17 -1.59 16 19 C -0.16 -1.25 7.15 -24.73 -0.18 -1.42 16 20 C 0.04 0.39 7.72 38.21 0.29 0.68 16 21 O -0.37 -4.75 11.17 -35.23 -0.39 -5.14 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 24 H 0.06 0.79 6.09 -51.93 -0.32 0.47 16 25 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.12 1.62 6.05 -52.49 -0.32 1.30 16 29 H 0.13 2.23 7.49 -52.48 -0.39 1.83 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -34.51 298.10 -6.50 -41.01 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.14 Total: -3.02 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.73 Total: 0.14 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.21 Total: -40.20 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.31 Total: -19.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.51 -6.50 -41.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819156239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.966 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds