Wall clock time and date at job start Mon Mar 30 2020 21:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46716 * 2 1 4 4 C 1.50695 * 109.46792 * 180.02562 * 3 2 1 5 5 C 1.39024 * 126.77014 * 269.99830 * 4 3 2 6 6 C 1.41486 * 126.01860 * 0.02562 * 5 4 3 7 7 H 1.07997 * 120.00624 * 0.02562 * 6 5 4 8 8 C 1.39742 * 119.99375 * 179.97438 * 6 5 4 9 9 N 1.30981 * 120.00541 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99721 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47056 * 89.99757 * 10 8 6 12 12 H 1.48500 * 109.47050 * 209.99950 * 10 8 6 13 13 H 1.48500 * 109.46945 * 329.99690 * 10 8 6 14 14 N 1.34848 * 107.95424 * 180.02562 * 5 4 3 15 15 N 1.28664 * 109.63729 * 359.70677 * 14 5 4 16 16 N 1.35020 * 126.77406 * 90.00060 * 4 3 2 17 17 C 1.46496 * 126.49166 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47294 * 89.99651 * 17 16 4 19 19 C 1.53006 * 109.47127 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47036 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.47027 * 299.99617 * 1 2 3 22 22 H 1.08994 * 109.47258 * 59.99975 * 1 2 3 23 23 H 1.08999 * 109.46901 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47027 * 240.00383 * 2 1 3 25 25 H 1.09002 * 109.47261 * 119.99753 * 2 1 3 26 26 H 1.09001 * 109.47060 * 60.00403 * 3 2 1 27 27 H 1.09002 * 109.47054 * 299.99879 * 3 2 1 28 28 H 0.97001 * 120.00257 * 179.97438 * 9 8 6 29 29 H 1.09001 * 109.47054 * 329.99383 * 17 16 4 30 30 H 1.09004 * 109.47074 * 209.99897 * 17 16 4 31 31 H 1.09001 * 109.46832 * 60.00150 * 18 17 16 32 32 H 1.08993 * 109.47194 * 299.99671 * 18 17 16 33 33 H 1.09001 * 109.46801 * 300.00272 * 19 18 17 34 34 H 1.09001 * 109.46998 * 59.99868 * 19 18 17 35 35 H 0.96700 * 114.00205 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3795 1.4425 1.1127 6 6 3.9615 1.4418 2.4643 7 1 2.9084 1.4409 2.7040 8 6 4.9113 1.4412 3.4893 9 7 6.1885 1.4418 3.1989 10 14 4.3594 1.4396 5.2740 11 1 4.2135 0.0391 5.7458 12 1 5.3713 2.1392 6.1057 13 1 3.0546 2.1393 5.3893 14 7 5.6558 1.4431 0.6772 15 7 5.6737 1.4375 -0.6093 16 7 4.3547 1.4428 -1.0825 17 6 3.9323 1.4436 -2.4852 18 6 3.7857 2.8863 -2.9730 19 6 3.3451 2.8870 -4.4382 20 8 3.2076 4.2345 -4.8936 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 6.8477 1.4418 3.9104 29 1 2.9752 0.9300 -2.5767 30 1 4.6796 0.9297 -3.0900 31 1 4.7428 3.3998 -2.8815 32 1 3.0384 3.4000 -2.3683 33 1 4.0927 2.3733 -5.0426 34 1 2.3881 2.3733 -4.5301 35 1 2.9304 4.3113 -5.8168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:16 Heat of formation + Delta-G solvation = -11.866308 kcal Electronic energy + Delta-G solvation = -17169.002783 eV Core-core repulsion = 14395.152531 eV Total energy + Delta-G solvation = -2773.850252 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.91159 -38.17778 -36.29810 -35.76646 -34.78476 -32.04394 -31.37307 -28.33539 -26.61880 -26.22598 -23.08474 -22.49673 -22.09573 -20.67850 -19.10263 -18.21488 -16.97680 -16.86205 -16.48622 -15.89353 -15.78115 -15.08148 -14.87853 -14.47639 -14.18841 -13.95031 -13.49416 -13.25038 -12.91053 -12.82479 -12.69149 -12.46076 -12.26524 -12.15687 -11.99415 -11.93680 -11.54130 -11.49816 -11.17414 -10.88995 -10.74296 -10.27023 -9.34888 -8.29131 -6.17547 0.98303 1.43753 1.44800 1.58304 1.96625 2.33806 2.34547 3.32639 3.53532 3.71567 4.01027 4.11787 4.16174 4.26919 4.27657 4.35268 4.41505 4.58797 4.63997 4.72400 4.89956 4.90978 5.04537 5.10483 5.13489 5.24931 5.29668 5.37013 5.54648 5.57191 5.67908 6.40671 6.45205 6.90272 6.93955 7.10556 8.28824 8.70757 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.006859 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.888371 B = 4081.036852 C = 4841.707086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.014 4.014 4 C -0.076 4.076 5 C 0.103 3.897 6 C -0.478 4.478 7 H 0.092 0.908 8 C 0.019 3.981 9 N -0.831 5.831 10 Si 0.985 3.015 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.251 1.251 14 N -0.283 5.283 15 N -0.177 5.177 16 N -0.360 5.360 17 C 0.131 3.869 18 C -0.130 4.130 19 C 0.089 3.911 20 O -0.599 6.599 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -0.863 -12.043 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.054 4.054 4 C -0.212 4.212 5 C -0.030 4.030 6 C -0.515 4.515 7 H 0.110 0.890 8 C -0.194 4.194 9 N -0.459 5.459 10 Si 0.806 3.194 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.174 1.174 14 N -0.152 5.152 15 N -0.152 5.152 16 N -0.154 5.154 17 C 0.009 3.991 18 C -0.169 4.169 19 C 0.011 3.989 20 O -0.408 6.408 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.860 -0.741 -11.830 16.076 hybrid contribution -0.556 -0.014 0.585 0.807 sum -11.417 -0.755 -11.245 16.042 Atomic orbital electron populations 1.21717 0.93311 1.02318 1.02506 1.21440 0.97096 0.95267 1.01230 1.19860 0.84565 0.98167 1.02802 1.22265 0.95421 1.16932 0.86571 1.19625 0.86503 1.01690 0.95204 1.18887 0.94531 1.49831 0.88205 0.89023 1.26771 0.94373 0.92719 1.05563 1.70189 1.02251 1.38333 1.35154 0.85171 0.79016 0.79046 0.76148 1.19088 1.20442 1.17444 1.75025 1.21864 1.17517 1.00836 1.81357 0.98714 1.28538 1.06591 1.49900 1.05800 1.52884 1.06857 1.21712 1.02805 0.97643 0.76936 1.21793 1.01714 0.95866 0.97510 1.21993 1.01271 0.83463 0.92222 1.86442 1.92187 1.27504 1.34657 0.92623 0.91214 0.91840 0.92440 0.93944 0.90825 0.89998 0.91873 0.86362 0.88051 0.93658 0.92034 0.91601 0.90444 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.11 -3.30 5.92 30.60 0.18 -3.12 16 3 C -0.01 -0.49 5.08 29.85 0.15 -0.34 16 4 C -0.08 -3.54 6.37 42.26 0.27 -3.27 16 5 C 0.10 5.93 6.72 39.67 0.27 6.20 16 6 C -0.48 -27.08 9.11 23.43 0.21 -26.86 16 7 H 0.09 4.73 7.30 -2.91 -0.02 4.71 16 8 C 0.02 1.06 5.49 85.18 0.47 1.52 16 9 N -0.83 -50.47 11.92 21.80 0.26 -50.21 16 10 Si 0.98 41.73 29.56 68.60 2.03 43.76 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 13 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 14 N -0.28 -17.70 10.55 -52.51 -0.55 -18.25 16 15 N -0.18 -9.81 13.74 37.02 0.51 -9.30 16 16 N -0.36 -15.89 3.63 -331.64 -1.20 -17.10 16 17 C 0.13 3.82 6.15 86.38 0.53 4.35 16 18 C -0.13 -3.60 5.91 30.60 0.18 -3.42 16 19 C 0.09 1.61 7.05 71.98 0.51 2.12 16 20 O -0.60 -12.20 13.66 -148.98 -2.03 -14.24 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 2.62 7.56 -2.39 -0.02 2.61 16 27 H 0.08 2.28 7.84 -2.39 -0.02 2.26 16 28 H 0.27 15.21 8.30 -92.71 -0.77 14.44 16 29 H 0.12 2.63 7.77 -2.39 -0.02 2.61 16 30 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.40 3.67 9.12 -74.06 -0.68 2.99 16 Total: -1.00 -79.40 301.41 2.89 -76.51 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.41 Total: 13.94 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.48 Total: -25.11 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -0.99 Total: -94.86 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -2.03 Total: -14.24 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -79.40 2.89 -76.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.645 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds