Wall clock time and date at job start Mon Mar 30 2020 21:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47081 * 269.99687 * 3 2 1 5 5 H 1.48502 * 109.47209 * 30.00146 * 3 2 1 6 6 H 1.48505 * 109.47016 * 149.99519 * 3 2 1 7 7 C 1.37882 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99517 * 181.96416 * 7 2 1 9 9 C 1.50694 * 119.99998 * 1.96392 * 7 2 1 10 10 C 1.53003 * 115.54841 * 84.71300 * 9 7 2 11 11 N 1.46904 * 109.47354 * 64.59254 * 10 9 7 12 12 C 1.46898 * 111.00004 * 176.57177 * 11 10 9 13 13 C 1.53001 * 109.46828 * 180.02562 * 12 11 10 14 14 C 1.53005 * 109.47091 * 183.45670 * 13 12 11 15 15 C 1.52995 * 115.54919 * 59.47732 * 14 13 12 16 16 O 1.42902 * 109.47039 * 62.85264 * 15 14 13 17 17 C 1.52996 * 117.49837 * 205.15379 * 14 13 12 18 18 C 1.52998 * 117.49566 * 273.80897 * 14 13 12 19 19 C 1.52996 * 117.49870 * 230.37789 * 9 7 2 20 20 C 1.52993 * 117.50251 * 299.04207 * 9 7 2 21 21 H 0.97008 * 120.00175 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47023 * 304.59705 * 10 9 7 23 23 H 1.08994 * 109.47291 * 184.59519 * 10 9 7 24 24 H 1.00903 * 110.99340 * 52.61413 * 11 10 9 25 25 H 1.08998 * 109.47569 * 60.00166 * 12 11 10 26 26 H 1.09002 * 109.47339 * 299.99968 * 12 11 10 27 27 H 1.08993 * 109.47281 * 63.45508 * 13 12 11 28 28 H 1.09002 * 109.46827 * 303.45210 * 13 12 11 29 29 H 1.09004 * 109.47777 * 302.85151 * 15 14 13 30 30 H 1.08998 * 109.47151 * 182.84627 * 15 14 13 31 31 H 0.96706 * 113.99818 * 180.02562 * 16 15 14 32 32 H 1.09003 * 117.49645 * 215.00221 * 17 14 13 33 33 H 1.09000 * 117.49906 * 0.02562 * 17 14 13 34 34 H 1.08996 * 117.50437 * 359.97438 * 18 14 13 35 35 H 1.09007 * 117.49468 * 144.99839 * 18 14 13 36 36 H 1.09001 * 117.49859 * 215.00294 * 19 9 7 37 37 H 1.08995 * 117.50254 * 0.02645 * 19 9 7 38 38 H 1.08999 * 117.50084 * 359.97438 * 20 9 7 39 39 H 1.09002 * 117.49795 * 144.97348 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1943 0.0326 9 6 1.2516 -2.4988 -0.0436 10 6 0.8526 -2.9835 -1.4389 11 7 2.0618 -3.2796 -2.2188 12 6 1.7167 -3.8255 -3.5382 13 6 2.9988 -4.1212 -4.3190 14 6 2.6394 -4.6084 -5.7242 15 6 1.8220 -3.6320 -6.5721 16 8 2.5839 -2.4444 -6.7986 17 6 3.6581 -5.4911 -6.4479 18 6 2.3643 -6.1026 -5.9048 19 6 1.6170 -3.5607 0.9955 20 6 0.2931 -2.8007 1.1100 21 1 -0.4851 0.8401 0.0004 22 1 0.2767 -2.2070 -1.9424 23 1 0.2472 -3.8855 -1.3508 24 1 2.6717 -3.9069 -1.7161 25 1 1.1165 -3.0992 -4.0863 26 1 1.1475 -4.7465 -3.4128 27 1 3.5694 -4.8925 -3.8019 28 1 3.5977 -3.2133 -4.3914 29 1 0.9008 -3.3781 -6.0476 30 1 1.5796 -4.0959 -7.5282 31 1 2.1263 -1.7789 -7.3305 32 1 3.7461 -5.3761 -7.5283 33 1 4.5842 -5.7251 -5.9229 34 1 2.4397 -6.7386 -5.0229 35 1 1.6009 -6.3899 -6.6280 36 1 1.5730 -4.6047 0.6851 37 1 2.4015 -3.3156 1.7113 38 1 0.2073 -2.0559 1.9012 39 1 -0.6219 -3.3444 0.8748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396028310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:02:29 Heat of formation + Delta-G solvation = -8.668127 kcal Electronic energy + Delta-G solvation = -17220.204209 eV Core-core repulsion = 14550.032983 eV Total energy + Delta-G solvation = -2670.171225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.85876 -36.96503 -35.79306 -34.35125 -31.76521 -29.66947 -26.74899 -25.56226 -24.18318 -22.63057 -21.73904 -20.87694 -19.16211 -18.65409 -17.28495 -16.11533 -15.72722 -15.27289 -14.92270 -14.39591 -13.88177 -13.57661 -13.46785 -13.13609 -12.69695 -12.49569 -12.16104 -11.61595 -11.47326 -11.23018 -10.99516 -10.82627 -10.68244 -10.62885 -10.37131 -10.31533 -10.09764 -9.95882 -9.62856 -9.26641 -8.80729 -8.28607 -7.99412 -7.45484 -5.88544 -3.90992 3.40379 3.46054 3.49807 3.57481 4.29940 4.53354 4.60091 4.75776 4.84938 5.15880 5.20779 5.34232 5.41573 5.52349 5.54906 5.58309 5.68699 5.80302 5.86679 5.94469 6.04142 6.17611 6.20966 6.39077 6.46607 6.54772 6.63321 6.69971 6.79406 6.98494 7.19872 7.56382 7.63478 7.65096 8.02710 8.06167 8.26750 8.61736 9.08029 9.72291 11.20998 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.005806 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.444980 B = 4821.312388 C = 5541.604534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.059 0.941 9 C 0.047 3.953 10 C 0.109 3.891 11 N -0.670 5.670 12 C 0.065 3.935 13 C -0.075 4.075 14 C -0.119 4.119 15 C 0.113 3.887 16 O -0.564 6.564 17 C -0.169 4.169 18 C -0.171 4.171 19 C -0.218 4.218 20 C -0.153 4.153 21 H 0.256 0.744 22 H 0.072 0.928 23 H -0.007 1.007 24 H 0.330 0.670 25 H 0.066 0.934 26 H 0.014 0.986 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.377 0.623 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -9.587 -11.925 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.046 3.954 10 C -0.019 4.019 11 N -0.300 5.300 12 C -0.065 4.065 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.036 3.964 16 O -0.369 6.369 17 C -0.206 4.206 18 C -0.208 4.208 19 C -0.255 4.255 20 C -0.191 4.191 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.011 0.989 24 H 0.147 0.853 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.223 0.777 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.600 -9.132 -11.790 15.138 hybrid contribution -0.452 0.248 -0.140 0.535 sum 2.148 -8.883 -11.930 15.029 Atomic orbital electron populations 1.70016 1.05792 1.26046 1.50754 1.24939 0.94784 0.98750 0.95032 0.86633 0.79815 0.83669 0.78055 1.20693 1.21596 1.20028 1.20309 0.92310 0.88346 1.49631 0.92329 1.18876 0.97661 0.93231 0.85638 1.21518 0.89286 0.96140 0.94998 1.60300 1.18064 1.48731 1.02882 1.21868 0.95966 0.96836 0.91827 1.21022 0.98027 1.01606 0.90603 1.21382 1.02557 0.90803 0.97182 1.21598 0.93086 0.85297 0.96463 1.86529 1.45612 1.28551 1.76198 1.22982 0.93819 1.03713 1.00047 1.23037 0.99723 0.94719 1.03344 1.22999 1.00090 0.95444 1.06965 1.22488 0.90835 1.01458 1.04347 0.93391 0.90996 0.98868 0.85304 0.91600 0.96838 0.92451 0.89877 0.92846 0.94201 0.77652 0.88992 0.88718 0.88436 0.88988 0.92304 0.90526 0.89842 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 12.73 55.43 0.71 -25.03 16 2 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.47 -13.05 8.73 -34.44 -0.30 -13.35 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.05 1.17 1.52 -155.67 -0.24 0.93 16 10 C 0.11 2.51 5.52 -3.82 -0.02 2.49 16 11 N -0.67 -13.66 6.42 -113.78 -0.73 -14.39 16 12 C 0.06 1.09 5.50 -3.82 -0.02 1.07 16 13 C -0.07 -1.11 5.29 -26.73 -0.14 -1.25 16 14 C -0.12 -1.48 1.85 -154.51 -0.29 -1.76 16 15 C 0.11 1.34 6.56 37.15 0.24 1.58 16 16 O -0.56 -7.29 13.56 -35.23 -0.48 -7.77 16 17 C -0.17 -1.82 9.96 -26.70 -0.27 -2.08 16 18 C -0.17 -1.77 9.94 -26.70 -0.27 -2.03 16 19 C -0.22 -4.84 9.96 -26.69 -0.27 -5.11 16 20 C -0.15 -3.70 9.23 -26.70 -0.25 -3.95 16 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 22 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 23 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 24 H 0.33 6.38 8.69 -39.29 -0.34 6.04 16 25 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 30 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.38 3.15 9.12 45.56 0.42 3.57 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -30.51 324.39 -8.63 -39.13 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.09 Total: 7.92 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -1.90 Total: -21.69 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.03 Total: -39.41 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.48 Total: -7.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.51 -8.63 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396028310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.466 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds