Wall clock time and date at job start Mon Mar 30 2020 20:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99679 * 2 1 4 4 C 1.52996 * 109.47585 * 66.04425 * 3 2 1 5 5 C 1.52997 * 109.47643 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47643 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47277 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00354 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99608 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00651 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99646 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47342 * 59.99785 * 11 9 7 13 13 H 1.48505 * 109.47135 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46947 * 299.99580 * 11 9 7 15 15 C 1.46893 * 110.99883 * 236.04741 * 2 1 3 16 16 C 1.50706 * 109.47176 * 293.94754 * 15 2 1 17 17 N 1.33318 * 126.54985 * 269.69640 * 16 15 2 18 18 N 1.28993 * 107.35170 * 179.83374 * 17 16 15 19 19 N 1.28787 * 108.72672 * 0.43026 * 18 17 16 20 20 H 0.97003 * 125.44768 * 179.73184 * 19 18 17 21 21 N 1.28884 * 109.10155 * 359.72615 * 19 18 17 22 22 H 1.09007 * 109.47214 * 183.95845 * 1 2 3 23 23 H 1.09002 * 109.47259 * 303.95383 * 1 2 3 24 24 H 1.08999 * 109.47697 * 63.95865 * 1 2 3 25 25 H 1.08998 * 109.47358 * 186.05143 * 3 2 1 26 26 H 1.09003 * 109.47119 * 306.04487 * 3 2 1 27 27 H 1.09007 * 109.47364 * 300.00577 * 4 3 2 28 28 H 1.09003 * 109.46841 * 59.99892 * 4 3 2 29 29 H 1.08998 * 109.47528 * 300.00857 * 5 4 3 30 30 H 1.09003 * 109.46891 * 60.00166 * 5 4 3 31 31 H 1.09007 * 109.47364 * 300.00821 * 6 5 4 32 32 H 1.09003 * 109.46841 * 60.00135 * 6 5 4 33 33 H 0.96993 * 120.00273 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46739 * 173.95162 * 15 2 1 35 35 H 1.09000 * 109.47767 * 53.95421 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1801 3.4857 1.3184 6 6 1.8167 4.1716 2.6369 7 6 2.3567 5.5785 2.6368 8 1 2.9040 5.9468 1.7817 9 6 2.1520 6.3954 3.7284 10 7 1.4859 5.9468 4.7700 11 14 2.8207 8.1397 3.7281 12 1 2.2275 8.8970 2.5969 13 1 2.4691 8.8049 5.0084 14 1 4.2978 8.1034 3.5791 15 6 1.9954 -0.7659 -1.1376 16 6 1.6370 -2.2204 -0.9728 17 7 2.3646 -3.1526 -0.3571 18 7 1.7103 -4.2619 -0.4303 19 7 0.6141 -4.0536 -1.0734 20 1 -0.0583 -4.7243 -1.2710 21 7 0.5532 -2.8116 -1.4122 22 1 -0.3634 -1.0253 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4511 -0.9233 25 1 3.0796 1.3445 -0.1083 26 1 1.5610 1.9273 -0.8309 27 1 0.5470 2.0845 1.4265 28 1 2.0657 1.5016 2.1491 29 1 3.2644 3.4584 1.2103 30 1 1.7461 4.0418 0.4875 31 1 0.7324 4.1989 2.7455 32 1 2.2510 3.6153 3.4676 33 1 1.3416 6.5217 5.5377 34 1 3.0797 -0.6610 -1.1756 35 1 1.5611 -0.3872 -2.0628 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:13 Heat of formation + Delta-G solvation = 111.821034 kcal Electronic energy + Delta-G solvation = -16285.090696 eV Core-core repulsion = 13548.896681 eV Total energy + Delta-G solvation = -2736.194016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.65957 -38.02819 -34.76032 -34.28875 -33.26572 -32.03580 -28.96088 -28.02579 -25.76677 -24.70712 -23.68868 -21.93718 -20.73752 -19.97784 -19.31225 -17.38014 -16.20477 -15.65894 -15.38540 -15.34860 -14.42925 -14.39205 -13.99769 -13.23165 -12.61382 -12.46572 -12.29875 -12.04351 -11.77046 -11.55121 -11.52411 -11.34842 -11.20732 -10.94370 -10.69716 -10.48391 -10.44774 -10.32842 -9.57257 -9.23688 -8.99137 -8.41584 -8.29356 -5.94709 -3.96973 0.92235 1.86693 2.10005 3.36363 3.40586 3.43045 3.59823 4.02292 4.12425 4.50215 5.01159 5.09782 5.24816 5.35037 5.40425 5.41179 5.46967 5.57334 5.66177 5.87474 5.95251 6.16520 6.19866 6.23469 6.53119 6.82502 6.93143 6.99144 7.04210 7.24988 7.74235 7.90577 8.04108 8.06580 8.49126 9.10526 9.66723 11.16632 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.072398 B = 0.003270 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.659318 B = 8561.579268 C = 8619.155649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.059 3.941 4 C -0.114 4.114 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.147 3.853 16 C 0.190 3.810 17 N -0.261 5.261 18 N -0.056 5.056 19 N -0.234 5.234 20 H 0.472 0.528 21 N -0.301 5.301 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.030 0.970 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.109 0.891 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -18.027 -13.869 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.068 4.068 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.016 3.984 16 C -0.094 4.094 17 N -0.134 5.134 18 N -0.051 5.051 19 N -0.079 5.079 20 H 0.326 0.674 21 N -0.153 5.153 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.598 -18.768 -13.065 23.015 hybrid contribution -0.559 1.312 -0.869 1.670 sum -3.156 -17.456 -13.934 22.557 Atomic orbital electron populations 1.22481 0.87036 1.01813 1.01417 1.61939 1.08433 1.15202 1.40674 1.22281 1.00092 0.85545 0.98898 1.21687 1.00921 0.96918 0.95680 1.21598 0.99452 0.92793 1.00874 1.19082 0.96669 0.94620 0.91198 1.21258 1.34858 0.98047 1.01732 0.92801 1.25033 0.95374 0.98451 0.95659 1.69955 1.41073 1.36513 1.06051 0.86675 0.79453 0.84818 0.77143 1.20302 1.21330 1.20246 1.20329 1.02049 0.82238 0.93757 1.25569 0.87893 0.99421 0.96515 1.75918 1.24466 0.95143 1.17913 1.78985 0.94433 1.20510 1.11212 1.47787 1.17258 1.07660 1.35219 0.67391 1.74721 1.24265 0.92964 1.23393 0.92215 0.90230 0.95186 0.90437 0.94556 0.92495 0.91523 0.93332 0.93643 0.96787 0.96578 0.93002 0.87275 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.17 60.07 0.55 0.80 16 2 N -0.54 -6.89 4.75 -244.37 -1.16 -8.05 16 3 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 4 C -0.11 -1.93 5.14 -26.73 -0.14 -2.07 16 5 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 6 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 11 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.15 1.57 5.59 -4.98 -0.03 1.55 16 16 C 0.19 2.21 6.98 -156.62 -1.09 1.11 16 17 N -0.26 -3.40 12.50 32.45 0.41 -2.99 16 18 N -0.06 -0.61 13.48 60.35 0.81 0.20 16 19 N -0.23 -1.85 7.91 60.34 0.48 -1.37 16 20 H 0.47 1.43 8.96 -340.52 -3.05 -1.63 16 21 N -0.30 -3.06 11.66 32.47 0.38 -2.68 16 22 H 0.06 0.72 6.75 -51.92 -0.35 0.36 16 23 H 0.08 1.03 6.30 -51.93 -0.33 0.70 16 24 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 26 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.06 0.97 6.47 -51.92 -0.34 0.63 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.11 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -33.30 296.49 -8.13 -41.43 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -7.81 Total: -7.67 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.41 Total: -13.54 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 1.65 Total: -41.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.30 -8.13 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.253 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds