Wall clock time and date at job start Mon Mar 30 2020 21:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46868 * 2 1 4 4 H 1.08997 * 109.47121 * 306.37510 * 3 2 1 5 5 C 1.50694 * 109.47253 * 186.37077 * 3 2 1 6 6 H 1.08007 * 120.00294 * 243.34456 * 5 3 2 7 7 C 1.37875 * 120.00123 * 63.33882 * 5 3 2 8 8 N 1.31523 * 119.99852 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00424 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47027 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46876 * 120.00198 * 9 7 5 12 12 H 1.48495 * 109.47368 * 240.00132 * 9 7 5 13 13 N 1.46902 * 109.47134 * 66.37194 * 3 2 1 14 14 C 1.44958 * 111.00051 * 281.29487 * 13 3 2 15 15 C 1.52047 * 112.65279 * 188.59131 * 14 13 3 16 16 O 1.42309 * 110.49065 * 48.88026 * 15 14 13 17 17 C 1.42865 * 114.45331 * 300.94731 * 16 15 14 18 18 H 1.08996 * 112.05482 * 291.90034 * 17 16 15 19 19 C 1.55416 * 107.53950 * 168.04084 * 17 16 15 20 20 C 1.54452 * 103.81391 * 284.18778 * 19 17 16 21 21 C 1.54209 * 106.35024 * 335.19657 * 20 19 17 22 22 C 1.43260 * 111.15953 * 149.03978 * 13 3 2 23 23 H 1.09004 * 109.16194 * 292.84595 * 22 13 3 24 24 H 1.09007 * 109.46874 * 154.23054 * 1 2 3 25 25 H 1.08996 * 109.47413 * 274.22532 * 1 2 3 26 26 H 1.08996 * 109.47172 * 34.23502 * 1 2 3 27 27 H 1.08995 * 109.47453 * 240.00251 * 2 1 3 28 28 H 1.08997 * 109.47176 * 119.99874 * 2 1 3 29 29 H 0.96996 * 119.99595 * 179.97438 * 8 7 5 30 30 H 1.08997 * 108.83198 * 67.80258 * 14 13 3 31 31 H 1.08998 * 108.82598 * 309.37054 * 14 13 3 32 32 H 1.08999 * 109.29530 * 169.19228 * 15 14 13 33 33 H 1.08997 * 109.29776 * 288.77598 * 15 14 13 34 34 H 1.09005 * 110.55589 * 42.76458 * 19 17 16 35 35 H 1.08999 * 110.55875 * 165.60015 * 19 17 16 36 36 H 1.08995 * 110.08155 * 94.42287 * 20 19 17 37 37 H 1.08997 * 110.07440 * 215.97775 * 20 19 17 38 38 H 1.09006 * 110.11883 * 119.56451 * 21 20 19 39 39 H 1.08999 * 110.11915 * 241.15195 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5864 1.9882 -0.8274 5 6 3.5386 1.4455 -0.1576 6 1 4.1640 1.8350 0.6321 7 6 4.1116 0.9510 -1.3101 8 7 3.3501 0.4770 -2.2720 9 14 5.9693 0.9554 -1.5059 10 1 6.5937 1.5378 -0.2909 11 1 6.4508 -0.4373 -1.6903 12 1 6.3402 1.7684 -2.6918 13 7 1.6798 2.0892 1.2689 14 6 0.2894 2.4993 1.2667 15 6 -0.0708 3.3546 2.4710 16 8 0.8805 4.3991 2.6427 17 6 2.2234 3.9504 2.8334 18 1 2.3526 3.4394 3.7874 19 6 3.1544 5.1874 2.6965 20 6 3.2023 5.4462 1.1746 21 6 2.8893 4.0978 0.4948 22 6 2.6510 3.0744 1.6412 23 1 3.5915 2.5775 1.8793 24 1 -0.3633 -0.9255 -0.4468 25 1 -0.3634 0.0757 1.0248 26 1 -0.3633 0.8496 -0.5781 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7532 0.1295 -3.0829 30 1 -0.3399 1.6094 1.2663 31 1 0.0923 3.0694 0.3588 32 1 -1.0594 3.7887 2.3218 33 1 -0.0821 2.7313 3.3651 34 1 2.7297 6.0455 3.2175 35 1 4.1501 4.9611 3.0779 36 1 2.4532 6.1879 0.8973 37 1 4.1952 5.7899 0.8846 38 1 1.9917 4.1860 -0.1174 39 1 3.7325 3.7833 -0.1201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221003284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:40 Heat of formation + Delta-G solvation = -34.036125 kcal Electronic energy + Delta-G solvation = -18993.102642 eV Core-core repulsion = 16321.831378 eV Total energy + Delta-G solvation = -2671.271264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89163 -36.23662 -35.09531 -32.66013 -31.20964 -29.41813 -27.70928 -26.51862 -25.34365 -22.87854 -22.08434 -20.38928 -19.27697 -18.21265 -16.69597 -16.26775 -15.68398 -14.77803 -14.68672 -14.46757 -13.70503 -13.63451 -13.18990 -12.75397 -12.51904 -12.05012 -11.76095 -11.36220 -11.24423 -11.01134 -10.84105 -10.78006 -10.69540 -10.61656 -10.45791 -10.20944 -9.89725 -9.80131 -9.65909 -9.48115 -8.68569 -8.62136 -8.39876 -6.91893 -6.04516 -4.07035 3.26686 3.35551 3.38179 4.19464 4.38349 4.84578 5.19063 5.23710 5.31176 5.42715 5.61214 5.70206 5.76262 5.87416 6.10150 6.14827 6.16406 6.20229 6.23327 6.26596 6.34558 6.40815 6.46785 6.55429 6.58300 6.69526 6.95899 7.07621 7.12968 7.22518 7.40509 7.60163 7.71923 7.82401 7.88695 8.21502 8.34515 8.74314 8.99426 9.56539 11.02913 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.011149 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.323446 B = 2510.850388 C = 3486.113731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.232 3.768 4 H 0.007 0.993 5 C -0.513 4.513 6 H 0.070 0.930 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.555 5.555 14 C 0.024 3.976 15 C 0.064 3.936 16 O -0.382 6.382 17 C 0.080 3.920 18 H 0.066 0.934 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.138 4.138 22 C 0.094 3.906 23 H 0.094 0.906 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.022 0.978 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 5.098 7.322 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.127 3.873 4 H 0.025 0.975 5 C -0.552 4.552 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.280 5.280 14 C -0.104 4.104 15 C -0.013 4.013 16 O -0.301 6.301 17 C 0.022 3.978 18 H 0.084 0.916 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.178 4.178 22 C -0.016 4.016 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.257 4.906 7.452 9.498 hybrid contribution 0.903 0.217 -0.924 1.310 sum -2.354 5.122 6.528 8.625 Atomic orbital electron populations 1.22095 0.99733 0.99515 0.99090 1.21561 0.91424 0.99760 1.01926 1.19205 0.95069 0.90219 0.82834 0.97510 1.21495 0.91211 1.40386 1.02080 0.91197 1.24925 0.97823 0.95340 0.95929 1.69930 1.34550 1.41426 1.06863 0.86577 0.85941 0.77701 0.78060 1.19683 1.21067 1.21169 1.58312 0.99623 1.32329 1.37714 1.22321 0.92294 0.99137 0.96638 1.22310 0.92028 0.89646 0.97353 1.87713 1.16894 1.32375 1.93129 1.23304 0.81967 0.95152 0.97395 0.91605 1.22488 0.98159 0.97098 0.97414 1.22158 1.00302 0.98737 0.94600 1.23023 1.02492 0.93275 0.98992 1.21996 0.96427 0.90398 0.92785 0.88835 0.95013 0.93833 0.93912 0.89417 0.94085 0.93058 0.89170 0.96036 0.89611 0.93727 0.91486 0.90679 0.92698 0.92665 0.93087 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.33 37.16 0.31 -2.57 16 2 C -0.11 -2.53 5.48 -26.73 -0.15 -2.67 16 3 C 0.23 5.61 1.15 -68.87 -0.08 5.54 16 4 H 0.01 0.20 7.41 -51.93 -0.38 -0.19 16 5 C -0.51 -13.26 6.00 -34.44 -0.21 -13.47 16 6 H 0.07 1.79 4.94 -52.48 -0.26 1.53 16 7 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -24.70 11.55 55.43 0.64 -24.06 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.56 -11.75 4.20 -222.81 -0.94 -12.68 16 14 C 0.02 0.45 4.50 -5.35 -0.02 0.43 16 15 C 0.06 1.03 6.95 36.67 0.25 1.29 16 16 O -0.38 -6.79 10.04 -35.23 -0.35 -7.15 16 17 C 0.08 1.37 3.96 -24.92 -0.10 1.27 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.11 -1.72 6.47 -24.69 -0.16 -1.88 16 20 C -0.12 -1.99 6.68 -25.34 -0.17 -2.16 16 21 C -0.14 -2.79 4.99 -24.76 -0.12 -2.92 16 22 C 0.09 1.87 2.17 -67.78 -0.15 1.73 16 23 H 0.09 2.00 5.99 -51.93 -0.31 1.69 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.77 6.33 -51.93 -0.33 0.44 16 26 H 0.04 0.84 7.08 -51.93 -0.37 0.47 16 27 H 0.09 2.29 6.21 -51.93 -0.32 1.97 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.09 1.60 4.19 -51.93 -0.22 1.38 16 31 H 0.02 0.44 7.34 -51.93 -0.38 0.06 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 1.12 7.17 -51.93 -0.37 0.75 16 39 H 0.08 1.86 6.52 -51.93 -0.34 1.52 16 LS Contribution 283.37 15.07 4.27 4.27 Total: -1.00 -27.31 283.37 -8.31 -35.61 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.22 Total: 2.17 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.68 Total: -13.88 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.30 Total: -36.75 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.35 Total: -7.15 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.31 -8.31 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221003284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.576 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds