Wall clock time and date at job start Mon Mar 30 2020 21:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.36589 * 2 1 4 4 C 1.53015 * 109.41849 * 240.15886 * 2 1 3 5 5 C 1.53299 * 109.48850 * 183.13039 * 4 2 1 6 6 H 1.09001 * 109.61030 * 296.82600 * 5 4 2 7 7 C 1.50708 * 109.60453 * 176.33240 * 5 4 2 8 8 H 1.08004 * 119.99489 * 274.00421 * 7 5 4 9 9 C 1.37870 * 120.00213 * 94.00397 * 7 5 4 10 10 N 1.31515 * 120.00438 * 183.79791 * 9 7 5 11 11 Si 1.86805 * 119.99901 * 3.80472 * 9 7 5 12 12 H 1.48497 * 109.47190 * 84.84533 * 11 9 7 13 13 H 1.48507 * 109.47059 * 204.84391 * 11 9 7 14 14 H 1.48495 * 109.47096 * 324.84035 * 11 9 7 15 15 C 1.52988 * 108.65905 * 56.58018 * 5 4 2 16 16 H 1.09001 * 109.56180 * 61.93069 * 15 5 4 17 17 C 1.52849 * 110.40761 * 182.59149 * 15 5 4 18 18 N 1.46983 * 109.13812 * 179.45769 * 17 15 5 19 19 C 1.46907 * 110.99768 * 174.29636 * 18 17 15 20 20 C 1.46761 * 111.56337 * 298.65556 * 18 17 15 21 21 C 1.53167 * 109.86438 * 60.93349 * 20 18 17 22 22 C 1.52910 * 108.92869 * 301.22959 * 21 20 18 23 23 H 1.08997 * 109.43069 * 298.95359 * 22 21 20 24 24 O 1.42681 * 110.62673 * 178.30399 * 22 21 20 25 25 H 1.09003 * 109.46911 * 300.16588 * 1 2 3 26 26 H 1.09009 * 109.46988 * 60.15949 * 1 2 3 27 27 H 1.08995 * 109.47409 * 180.16319 * 1 2 3 28 28 H 1.09001 * 109.46795 * 63.12605 * 4 2 1 29 29 H 1.09000 * 109.46789 * 303.13896 * 4 2 1 30 30 H 0.96996 * 120.00508 * 179.97438 * 10 9 7 31 31 H 1.08998 * 109.53115 * 59.55691 * 17 15 5 32 32 H 1.09006 * 109.52818 * 299.35224 * 17 15 5 33 33 H 1.08996 * 109.46816 * 180.72537 * 19 18 17 34 34 H 1.08995 * 109.47017 * 300.73076 * 19 18 17 35 35 H 1.09000 * 109.46994 * 60.73320 * 19 18 17 36 36 H 1.08998 * 109.41249 * 300.81477 * 20 18 17 37 37 H 1.08997 * 109.40793 * 181.05284 * 20 18 17 38 38 H 1.09005 * 109.56107 * 181.39632 * 21 20 18 39 39 H 1.08996 * 109.56359 * 61.06536 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0387 -0.7181 -1.2518 5 6 3.5696 -0.7878 -1.2147 6 1 3.9825 0.2206 -1.2407 7 6 4.0689 -1.5728 -2.4004 8 1 4.1383 -2.6492 -2.3449 9 6 4.4370 -0.9169 -3.5559 10 7 4.8015 -1.6056 -4.6154 11 14 4.4182 0.9500 -3.6166 12 1 5.6974 1.4758 -3.0760 13 1 4.2538 1.3980 -5.0229 14 1 3.2883 1.4605 -2.7993 15 6 3.9968 -1.4843 0.0787 16 1 3.6085 -2.5028 0.0902 17 6 5.5210 -1.5184 0.1875 18 7 5.8998 -2.1805 1.4438 19 6 7.3558 -2.3569 1.5278 20 6 5.3900 -1.4530 2.6120 21 6 3.8600 -1.3985 2.5643 22 6 3.4284 -0.7068 1.2707 23 1 3.8185 0.3109 1.2562 24 8 2.0055 -0.6713 1.1703 25 1 -0.3633 0.5164 0.8885 26 1 -0.3633 0.5114 -0.8915 27 1 -0.3634 -1.0276 0.0029 28 1 1.7213 -0.1703 -2.1391 29 1 1.6296 -1.7279 -1.2828 30 1 5.0601 -1.1442 -5.4285 31 1 5.9097 -0.5001 0.1807 32 1 5.9341 -2.0727 -0.6554 33 1 7.6075 -2.8606 2.4610 34 1 7.6980 -2.9589 0.6861 35 1 7.8422 -1.3818 1.4986 36 1 5.7886 -0.4385 2.6093 37 1 5.7060 -1.9625 3.5223 38 1 3.4879 -0.8361 3.4207 39 1 3.4579 -2.4113 2.5883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259413217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:44 Heat of formation + Delta-G solvation = -58.941957 kcal Electronic energy + Delta-G solvation = -18609.359101 eV Core-core repulsion = 15937.007839 eV Total energy + Delta-G solvation = -2672.351262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70024 -37.16446 -34.18197 -32.80479 -31.73439 -30.61140 -28.21654 -25.83814 -25.25004 -22.89531 -22.15424 -20.96319 -19.55152 -19.26058 -16.86278 -16.19038 -15.36595 -14.69608 -14.62884 -14.36656 -14.20023 -13.74614 -13.22460 -12.77351 -12.64740 -12.41177 -12.21708 -11.96265 -11.68112 -11.51595 -11.24580 -11.12718 -11.02882 -10.83539 -10.61102 -10.49221 -10.06504 -9.88897 -9.71907 -9.43308 -9.13981 -8.54781 -8.40616 -7.95736 -6.09602 -4.07663 3.23804 3.33441 3.34353 4.12632 4.29597 4.38776 5.11210 5.18586 5.32164 5.43629 5.49364 5.50575 5.63952 5.70279 5.73105 5.75865 5.85291 5.90939 5.97272 6.06725 6.10138 6.16371 6.21554 6.28045 6.33032 6.40071 6.51957 6.68706 6.79403 6.84886 6.95147 7.23817 7.41050 7.46964 7.52793 7.73668 7.85164 8.51802 8.96776 9.53665 11.03641 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.011790 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.691305 B = 2374.354719 C = 3529.245197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.044 0.956 4 C -0.138 4.138 5 C 0.020 3.980 6 H 0.027 0.973 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.265 1.265 15 C -0.093 4.093 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.548 5.548 19 C 0.028 3.972 20 C 0.062 3.938 21 C -0.105 4.105 22 C 0.089 3.911 23 H 0.042 0.958 24 O -0.381 6.381 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 3.061 12.137 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.062 0.938 4 C -0.176 4.176 5 C 0.001 3.999 6 H 0.045 0.955 7 C -0.541 4.541 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.190 1.190 15 C -0.112 4.112 16 H 0.097 0.903 17 C -0.053 4.053 18 N -0.273 5.273 19 C -0.120 4.120 20 C -0.067 4.067 21 C -0.143 4.143 22 C 0.032 3.968 23 H 0.060 0.940 24 O -0.301 6.301 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.336 2.532 12.070 12.404 hybrid contribution 0.628 2.011 -0.472 2.159 sum -0.708 4.543 11.598 12.476 Atomic orbital electron populations 1.21744 0.94158 1.02487 1.01374 1.22217 0.94047 0.94834 0.86563 0.93789 1.22499 0.99448 1.00391 0.95250 1.19186 0.91391 0.95789 0.93563 0.95532 1.20930 1.42515 0.95198 0.95467 0.90639 1.25030 0.94753 0.97653 0.95497 1.69898 1.45714 1.35554 1.02577 0.86961 0.79011 0.87107 0.77046 1.20359 1.21575 1.19025 1.21724 0.93919 1.00667 0.94874 0.90337 1.22062 0.96288 0.96337 0.90662 1.61878 1.11717 1.50938 1.02754 1.22296 0.87735 0.99741 1.02233 1.21984 0.94740 0.96086 0.93857 1.21503 0.94539 1.01876 0.96392 1.22127 0.81350 0.97643 0.95717 0.94003 1.87780 1.20659 1.78651 1.42997 0.92840 0.91549 0.91977 0.92165 0.91709 0.92701 0.95901 0.88661 0.92022 0.91167 0.96178 0.95455 0.90881 0.91558 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.56 37.16 0.36 -1.75 16 2 C 0.08 1.48 3.26 -26.72 -0.09 1.39 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.14 -2.91 4.67 -26.57 -0.12 -3.03 16 5 C 0.02 0.46 1.33 -91.62 -0.12 0.34 16 6 H 0.03 0.63 5.45 -51.93 -0.28 0.34 16 7 C -0.50 -13.58 7.85 -34.44 -0.27 -13.85 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 11 Si 0.87 21.18 26.83 -169.99 -4.56 16.62 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.27 -6.17 6.72 56.52 0.38 -5.79 16 15 C -0.09 -1.90 1.75 -90.58 -0.16 -2.05 16 16 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 17 C 0.07 1.43 4.60 -3.86 -0.02 1.41 16 18 N -0.55 -9.08 4.89 -242.95 -1.19 -10.27 16 19 C 0.03 0.39 9.59 60.07 0.58 0.97 16 20 C 0.06 0.88 5.46 -3.81 -0.02 0.86 16 21 C -0.11 -1.61 5.81 -26.69 -0.16 -1.76 16 22 C 0.09 1.63 2.49 -26.65 -0.07 1.56 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 O -0.38 -7.19 10.12 -35.23 -0.36 -7.55 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.30 7.85 -51.93 -0.41 0.89 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 2.06 7.39 -51.93 -0.38 1.68 16 33 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -28.94 297.66 -8.02 -36.97 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.99 Total: -0.14 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.19 Total: -13.99 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.42 Total: -36.40 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.36 Total: -7.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.56 Total: 16.62 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.94 -8.02 -36.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.973 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds