Wall clock time and date at job start Mon Mar 30 2020 21:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47263 * 2 1 4 4 N 1.46904 * 109.47330 * 119.99950 * 2 1 3 5 5 C 1.46827 * 110.99870 * 179.97438 * 4 2 1 6 6 C 1.53183 * 109.47861 * 185.44737 * 5 4 2 7 7 H 1.08996 * 109.94283 * 179.54585 * 6 5 4 8 8 C 1.53226 * 109.53228 * 58.63780 * 6 5 4 9 9 O 1.42891 * 109.35141 * 299.69850 * 8 6 5 10 10 C 1.42891 * 114.29476 * 299.34816 * 9 8 6 11 11 C 1.53226 * 109.37280 * 60.63764 * 10 9 8 12 12 H 1.09004 * 110.41127 * 180.96763 * 11 10 9 13 13 C 1.46823 * 110.99824 * 304.46889 * 4 2 1 14 14 C 1.53442 * 108.69872 * 301.63553 * 11 10 9 15 15 C 1.50703 * 109.76044 * 178.54221 * 14 11 10 16 16 H 1.08000 * 120.00246 * 240.64789 * 15 14 11 17 17 C 1.37884 * 119.99683 * 60.64778 * 15 14 11 18 18 N 1.31515 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46857 * 89.99863 * 19 17 15 21 21 H 1.48501 * 109.47004 * 210.00060 * 19 17 15 22 22 H 1.48503 * 109.46779 * 330.00143 * 19 17 15 23 23 H 1.09010 * 109.46774 * 299.99817 * 1 2 3 24 24 H 1.08997 * 109.47299 * 59.99872 * 1 2 3 25 25 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46897 * 239.99840 * 2 1 3 27 27 H 1.09001 * 109.46859 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47068 * 300.00270 * 3 2 1 29 29 H 1.08998 * 109.47294 * 60.00083 * 3 2 1 30 30 H 1.08998 * 109.47508 * 65.44286 * 5 4 2 31 31 H 1.08998 * 109.47089 * 305.44738 * 5 4 2 32 32 H 1.08998 * 109.49035 * 59.65951 * 8 6 5 33 33 H 1.09003 * 109.49457 * 179.73580 * 8 6 5 34 34 H 1.08997 * 109.48599 * 300.66263 * 10 9 8 35 35 H 1.09007 * 109.50332 * 180.62082 * 10 9 8 36 36 H 1.08991 * 109.48029 * 294.53457 * 13 4 2 37 37 H 1.09004 * 109.47567 * 54.54875 * 13 4 2 38 38 H 1.09002 * 109.72602 * 299.18886 * 14 11 10 39 39 H 0.97006 * 120.00103 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4875 -0.7126 1.2330 6 6 3.9598 -1.5566 2.4208 7 1 5.0491 -1.5833 2.4482 8 6 3.4054 -2.9792 2.2911 9 8 1.9772 -2.9320 2.2848 10 6 1.4021 -2.3771 3.4692 11 6 1.8861 -0.9335 3.6410 12 1 1.4704 -0.4988 4.5501 13 6 1.4637 -0.0911 2.4180 14 6 3.4188 -0.9340 3.7148 15 6 3.9230 0.4799 3.8482 16 1 4.5742 0.8946 3.0929 17 6 3.5528 1.2442 4.9345 18 7 2.7594 0.7394 5.8539 19 14 4.1783 2.9965 5.1003 20 1 3.2287 3.9258 4.4371 21 1 4.2914 3.3477 6.5388 22 1 5.5119 3.1090 4.4569 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.8625 0.3054 1.3387 31 1 3.8662 -1.1448 0.3068 32 1 3.7587 -3.4237 1.3607 33 1 3.7456 -3.5805 3.1341 34 1 1.7070 -2.9681 4.3328 35 1 0.3153 -2.3888 3.3860 36 1 1.8383 0.9269 2.5245 37 1 0.3759 -0.0730 2.3506 38 1 3.7457 -1.5234 4.5714 39 1 2.4993 1.2769 6.6184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:02:35 Heat of formation + Delta-G solvation = -39.766182 kcal Electronic energy + Delta-G solvation = -19343.162505 eV Core-core repulsion = 16671.642767 eV Total energy + Delta-G solvation = -2671.519738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70659 -36.60695 -34.06838 -32.14896 -31.22111 -29.48934 -27.00382 -25.98002 -25.52810 -23.32431 -22.35535 -21.02162 -19.34248 -17.58588 -15.93619 -15.59317 -15.08263 -14.60308 -14.28347 -14.06417 -13.80127 -13.45280 -13.22377 -12.95021 -12.43464 -12.29141 -12.06960 -11.49479 -11.29048 -11.13144 -10.89098 -10.86280 -10.68041 -10.54382 -10.31931 -10.26848 -9.89253 -9.82218 -9.24734 -9.00629 -8.73543 -8.47584 -8.16486 -7.07017 -6.02470 -4.06837 3.25319 3.33237 3.35829 4.39299 4.72877 4.95694 5.27103 5.37291 5.55997 5.73428 5.80896 5.89383 5.96809 5.98451 6.13724 6.16216 6.17357 6.30493 6.33106 6.37851 6.45213 6.50781 6.56785 6.61684 6.66505 6.71729 6.75961 6.89330 7.03364 7.18741 7.49497 7.59740 7.73440 7.94113 8.15366 8.15951 8.34799 8.41033 8.93875 9.56094 11.03090 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.011778 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.125286 B = 2376.699627 C = 2950.109128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 C -0.186 4.186 4 N -0.509 5.509 5 C 0.079 3.921 6 C -0.119 4.119 7 H 0.064 0.936 8 C 0.080 3.920 9 O -0.363 6.363 10 C 0.075 3.925 11 C -0.113 4.113 12 H 0.106 0.894 13 C 0.078 3.922 14 C 0.056 3.944 15 C -0.504 4.504 16 H 0.054 0.946 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.024 0.976 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -2.481 -7.910 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.245 4.245 4 N -0.233 5.233 5 C -0.049 4.049 6 C -0.138 4.138 7 H 0.082 0.918 8 C 0.002 3.998 9 O -0.281 6.281 10 C -0.002 4.002 11 C -0.133 4.133 12 H 0.124 0.876 13 C -0.049 4.049 14 C 0.038 3.962 15 C -0.542 4.542 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.696 -2.988 -7.905 8.871 hybrid contribution 0.852 2.105 0.493 2.324 sum -1.844 -0.883 -7.412 7.689 Atomic orbital electron populations 1.21859 0.95283 1.01949 1.00857 1.21613 0.95103 0.91813 0.94645 1.22492 1.01609 0.98914 1.01481 1.62170 1.07636 1.52269 1.01232 1.21852 0.87849 0.98722 0.96434 1.21997 0.98825 0.94952 0.98019 0.91778 1.22333 0.82565 0.95679 0.99206 1.87834 1.18411 1.82194 1.39660 1.22478 0.96581 0.94683 0.86485 1.22191 0.99911 0.92987 0.98162 0.87585 1.22178 0.96706 0.97051 0.88978 1.18809 0.91102 0.95588 0.90747 1.21102 1.28857 0.97621 1.06591 0.92817 1.24914 0.95164 0.97867 0.95762 1.69856 1.35193 1.36538 1.11236 0.86723 0.79311 0.85533 0.77243 1.20826 1.21244 1.20036 0.92528 0.93411 0.92095 0.91294 0.92598 0.93412 0.92251 0.94083 0.93608 0.91120 0.95223 0.95287 0.91246 0.93836 0.93332 0.95746 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.83 37.16 0.33 -1.77 16 2 C 0.08 1.27 3.03 -67.71 -0.20 1.06 16 3 C -0.19 -2.99 8.51 37.16 0.32 -2.67 16 4 N -0.51 -9.77 2.96 -225.75 -0.67 -10.44 16 5 C 0.08 1.55 4.15 -3.77 -0.02 1.54 16 6 C -0.12 -2.45 2.85 -90.18 -0.26 -2.71 16 7 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.08 1.51 6.28 37.27 0.23 1.74 16 9 O -0.36 -7.40 9.08 -35.23 -0.32 -7.72 16 10 C 0.07 1.52 6.30 37.27 0.23 1.76 16 11 C -0.11 -2.57 2.71 -89.54 -0.24 -2.81 16 12 H 0.11 2.70 6.21 -51.93 -0.32 2.38 16 13 C 0.08 1.65 3.99 -3.14 -0.01 1.64 16 14 C 0.06 1.35 1.94 -91.31 -0.18 1.17 16 15 C -0.50 -13.12 6.52 -34.44 -0.22 -13.35 16 16 H 0.05 1.41 6.69 -52.49 -0.35 1.06 16 17 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 18 N -0.89 -24.46 11.41 55.43 0.63 -23.83 16 19 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.06 0.87 6.22 -51.92 -0.32 0.55 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.93 6.53 -51.93 -0.34 0.59 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.05 6.63 -51.93 -0.34 0.71 16 30 H 0.04 0.87 5.03 -51.93 -0.26 0.61 16 31 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.04 1.02 5.70 -51.93 -0.30 0.73 16 37 H 0.05 0.97 5.92 -51.93 -0.31 0.66 16 38 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -26.96 281.53 -7.58 -34.54 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.33 Total: 0.13 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.12 Total: -12.79 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.27 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.32 Total: -7.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.96 -7.58 -34.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.225 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds