Wall clock time and date at job start Mon Mar 30 2020 21:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.48702 * 2 1 4 4 C 1.53085 * 109.48469 * 239.97062 * 2 1 3 5 5 C 1.53175 * 109.16768 * 182.41133 * 4 2 1 6 6 H 1.09009 * 109.61359 * 297.06997 * 5 4 2 7 7 C 1.52995 * 109.54736 * 176.85070 * 5 4 2 8 8 N 1.46494 * 109.47429 * 175.44208 * 7 5 4 9 9 C 1.36942 * 120.00380 * 269.99766 * 8 7 5 10 10 H 1.08001 * 120.00052 * 140.59410 * 9 8 7 11 11 C 1.38810 * 119.99797 * 320.60233 * 9 8 7 12 12 N 1.31619 * 119.99889 * 340.34247 * 11 9 8 13 13 Si 1.86795 * 120.00164 * 160.34381 * 11 9 8 14 14 H 1.48506 * 109.47082 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47098 * 119.99507 * 13 11 9 16 16 H 1.48491 * 109.47368 * 239.99955 * 13 11 9 17 17 C 1.46504 * 119.99794 * 89.99425 * 8 7 5 18 18 C 1.53003 * 117.49483 * 183.22759 * 17 8 7 19 19 C 1.53001 * 60.00051 * 252.51053 * 18 17 8 20 20 C 1.53175 * 109.03357 * 56.97648 * 5 4 2 21 21 C 1.53085 * 109.16653 * 303.02071 * 20 5 4 22 22 O 1.42903 * 109.41423 * 57.61245 * 21 20 5 23 23 H 1.08998 * 109.47527 * 299.97651 * 1 2 3 24 24 H 1.09002 * 109.46666 * 59.97400 * 1 2 3 25 25 H 1.08996 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.52275 * 62.50406 * 4 2 1 27 27 H 1.09003 * 109.57551 * 302.34952 * 4 2 1 28 28 H 1.09002 * 109.46880 * 295.44352 * 7 5 4 29 29 H 1.08995 * 109.47243 * 55.43973 * 7 5 4 30 30 H 0.96997 * 120.00276 * 175.03141 * 12 11 9 31 31 H 1.08994 * 115.55301 * 328.93320 * 17 8 7 32 32 H 1.08994 * 117.50490 * 0.02562 * 18 17 8 33 33 H 1.09009 * 117.49765 * 145.02690 * 18 17 8 34 34 H 1.09002 * 117.50554 * 252.51278 * 19 18 17 35 35 H 1.09002 * 117.51569 * 107.47896 * 19 18 17 36 36 H 1.09004 * 109.52103 * 183.11757 * 20 5 4 37 37 H 1.08999 * 109.57024 * 62.96503 * 20 5 4 38 38 H 1.08994 * 109.48363 * 297.62784 * 21 20 5 39 39 H 1.09006 * 109.48788 * 177.59618 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7222 -1.2495 5 6 3.5712 -0.7709 -1.2120 6 1 3.9703 0.2430 -1.2414 7 6 4.0879 -1.5594 -2.4170 8 7 5.5519 -1.5130 -2.4397 9 6 6.1948 -0.5078 -3.1117 10 1 7.0836 -0.0600 -2.6921 11 6 5.7041 -0.0642 -4.3321 12 7 4.8868 -0.8253 -5.0286 13 14 6.2038 1.6127 -4.9859 14 1 7.1244 2.2660 -4.0210 15 1 6.8909 1.4500 -6.2923 16 1 4.9939 2.4550 -5.1644 17 6 6.3283 -2.5420 -1.7434 18 6 7.8513 -2.3964 -1.7403 19 6 7.1878 -3.4767 -2.5969 20 6 4.0176 -1.4600 0.0811 21 6 3.4307 -0.7093 1.2791 22 8 2.0065 -0.6742 1.1665 23 1 -0.3634 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7150 -0.1843 -2.1398 27 1 1.6444 -1.7374 -1.2720 28 1 3.7583 -2.5956 -2.3416 29 1 3.6962 -1.1195 -3.3341 30 1 4.4872 -0.4875 -5.8453 31 1 5.8606 -2.9614 -0.8527 32 1 8.2757 -1.5350 -2.2559 33 1 8.3861 -2.7202 -0.8473 34 1 7.2859 -4.5111 -2.2674 35 1 7.1753 -3.3263 -3.6764 36 1 5.1058 -1.4497 0.1423 37 1 3.6622 -2.4904 0.0871 38 1 3.8192 0.3089 1.2959 39 1 3.7099 -1.2202 2.2007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352714216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:33 Heat of formation + Delta-G solvation = -31.610585 kcal Electronic energy + Delta-G solvation = -18204.481923 eV Core-core repulsion = 15533.315838 eV Total energy + Delta-G solvation = -2671.166085 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50008 -38.69704 -35.92267 -34.48519 -33.62353 -31.91007 -29.05018 -27.42618 -25.48021 -24.23462 -23.00198 -22.28631 -21.48199 -20.81820 -18.21237 -17.26595 -17.17618 -16.75697 -16.41130 -15.79939 -15.58664 -15.13227 -14.78417 -14.37290 -13.96919 -13.59435 -13.30898 -13.08324 -13.04204 -12.81229 -12.67040 -12.49507 -12.28478 -12.12594 -11.96129 -11.82547 -11.64754 -11.36871 -11.24518 -11.03722 -10.84163 -10.48270 -10.29076 -8.47288 -7.76335 -5.49437 1.40683 1.44828 1.53847 2.47676 2.91317 3.15388 3.41545 3.48242 3.96896 3.98917 4.09844 4.17274 4.30856 4.33975 4.45448 4.50322 4.57371 4.60224 4.72273 4.80561 4.82408 4.88066 4.93915 5.03471 5.05485 5.13548 5.16519 5.29316 5.33339 5.34938 5.42615 5.54879 5.63250 5.68274 5.80795 6.36004 6.47871 7.17456 7.86476 8.38914 9.11304 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.008808 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.774214 B = 3178.010088 C = 4036.090825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.052 0.948 4 C -0.135 4.135 5 C -0.098 4.098 6 H 0.044 0.956 7 C 0.163 3.837 8 N -0.565 5.565 9 C -0.257 4.257 10 H 0.056 0.944 11 C -0.034 4.034 12 N -0.914 5.914 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.294 1.294 16 H -0.287 1.287 17 C 0.104 3.896 18 C -0.181 4.181 19 C -0.224 4.224 20 C -0.135 4.135 21 C 0.065 3.935 22 O -0.395 6.395 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.250 0.750 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -0.018 10.832 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.070 0.930 4 C -0.173 4.173 5 C -0.118 4.118 6 H 0.063 0.937 7 C 0.038 3.962 8 N -0.282 5.282 9 C -0.387 4.387 10 H 0.074 0.926 11 C -0.232 4.232 12 N -0.558 5.558 13 Si 0.778 3.222 14 H -0.192 1.192 15 H -0.221 1.221 16 H -0.213 1.213 17 C -0.004 4.004 18 C -0.219 4.219 19 C -0.265 4.265 20 C -0.173 4.173 21 C -0.012 4.012 22 O -0.315 6.315 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.937 -0.080 10.775 11.853 hybrid contribution 0.631 0.862 -1.319 1.698 sum -4.305 0.782 9.456 10.419 Atomic orbital electron populations 1.21751 0.91584 1.03084 1.03111 1.22152 0.96033 0.94471 0.84505 0.93025 1.22145 0.95541 1.01344 0.98306 1.21618 0.94355 0.99334 0.96518 0.93734 1.20759 0.82893 0.95799 0.96773 1.43523 1.00986 1.25735 1.57936 1.19202 1.11042 1.10442 0.98030 0.92605 1.25856 1.00706 1.01409 0.95193 1.70190 1.35022 1.35191 1.15412 0.85501 0.77726 0.81219 0.77779 1.19250 1.22117 1.21330 1.21630 0.89370 0.93197 0.96249 1.23016 0.96327 1.00522 1.02061 1.23271 1.10300 0.95685 0.97224 1.22137 1.01201 0.99422 0.94499 1.22640 0.80266 0.99620 0.98652 1.87836 1.21883 1.78342 1.43403 0.91199 0.90062 0.91891 0.91872 0.91607 0.96033 0.92315 0.94095 0.86889 0.90855 0.87078 0.88233 0.93014 0.90998 0.92039 0.93608 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.56 71.98 0.69 -2.39 16 2 C 0.09 2.43 3.26 30.62 0.10 2.53 16 3 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.13 -4.41 4.70 30.68 0.14 -4.27 16 5 C -0.10 -3.70 2.48 -10.68 -0.03 -3.73 16 6 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 7 C 0.16 7.52 4.81 86.38 0.42 7.94 16 8 N -0.56 -27.38 2.58 -678.04 -1.75 -29.13 16 9 C -0.26 -13.76 8.48 84.03 0.71 -13.05 16 10 H 0.06 3.02 6.74 -2.91 -0.02 3.00 16 11 C -0.03 -1.87 4.98 84.86 0.42 -1.45 16 12 N -0.91 -53.09 11.49 21.65 0.25 -52.84 16 13 Si 0.95 44.37 29.60 68.60 2.03 46.40 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 17 C 0.10 4.29 5.46 44.99 0.25 4.53 16 18 C -0.18 -6.89 9.80 30.60 0.30 -6.59 16 19 C -0.22 -9.09 10.36 30.60 0.32 -8.77 16 20 C -0.13 -4.34 4.40 30.68 0.14 -4.21 16 21 C 0.06 1.79 6.84 72.01 0.49 2.28 16 22 O -0.39 -11.76 10.41 -148.98 -1.55 -13.31 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 29 H 0.06 3.14 5.58 -2.39 -0.01 3.13 16 30 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 31 H 0.11 4.08 6.53 -2.39 -0.02 4.07 16 32 H 0.07 3.14 6.46 -2.39 -0.02 3.13 16 33 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 34 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.41 6.20 -2.39 -0.01 2.40 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -60.42 304.30 3.92 -56.49 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.00 Total: 19.55 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.95 Total: -27.17 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.50 Total: -81.97 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.55 Total: -13.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.42 3.92 -56.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352714216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.883 kcal (2) G-P(sol) polarization free energy of solvation -60.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds