Wall clock time and date at job start Mon Mar 30 2020 20:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99988 * 2 1 4 4 H 1.48504 * 109.46864 * 269.99552 * 3 2 1 5 5 H 1.48496 * 109.47549 * 29.99153 * 3 2 1 6 6 H 1.48500 * 109.47438 * 149.99651 * 3 2 1 7 7 C 1.37879 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00145 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99482 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46498 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99840 * 180.59995 * 10 9 7 12 12 H 1.09003 * 109.47148 * 3.44674 * 11 10 9 13 13 C 1.52998 * 109.47430 * 243.44666 * 11 10 9 14 14 C 1.52998 * 117.50204 * 134.08418 * 13 11 10 15 15 C 1.52999 * 60.00402 * 252.51009 * 14 13 11 16 16 C 1.52999 * 109.47226 * 123.44363 * 11 10 9 17 17 H 1.08993 * 109.52205 * 179.97438 * 16 11 10 18 18 C 1.53179 * 109.52271 * 300.12889 * 16 11 10 19 19 C 1.53186 * 109.02811 * 176.82136 * 18 16 11 20 20 C 1.53091 * 109.21651 * 303.11034 * 19 18 16 21 21 O 1.42907 * 109.41333 * 57.57960 * 20 19 18 22 22 C 1.42907 * 114.09573 * 298.84319 * 21 20 19 23 23 H 0.96998 * 120.00345 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47434 * 59.99699 * 9 7 2 25 25 H 1.08997 * 109.47141 * 299.98889 * 9 7 2 26 26 H 1.00897 * 111.00435 * 304.55606 * 10 9 7 27 27 H 1.09000 * 115.54925 * 279.79681 * 13 11 10 28 28 H 1.09003 * 117.49665 * 0.02562 * 14 13 11 29 29 H 1.08997 * 117.50200 * 145.02340 * 14 13 11 30 30 H 1.08998 * 117.50143 * 252.51107 * 15 14 13 31 31 H 1.09003 * 117.52004 * 107.47296 * 15 14 13 32 32 H 1.08994 * 109.54018 * 296.75231 * 18 16 11 33 33 H 1.09002 * 109.54334 * 57.01806 * 18 16 11 34 34 H 1.09010 * 109.51860 * 183.17678 * 19 18 16 35 35 H 1.08999 * 109.52404 * 63.05286 * 19 18 16 36 36 H 1.08996 * 109.48159 * 297.60067 * 20 19 18 37 37 H 1.08996 * 109.48840 * 177.56646 * 20 19 18 38 38 H 1.09003 * 109.48221 * 301.17265 * 22 21 20 39 39 H 1.09002 * 109.47654 * 181.14300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 -0.0138 12 1 0.4310 -4.7369 -0.0830 13 6 1.8189 -5.6715 1.2738 14 6 0.6479 -6.3253 2.0102 15 6 1.3142 -5.0760 2.5898 16 6 1.9707 -5.7261 -1.2194 17 1 1.4520 -6.6846 -1.2306 18 6 1.6603 -4.9603 -2.5092 19 6 2.2015 -5.7528 -3.7032 20 6 3.7021 -5.9886 -3.5129 21 8 3.9221 -6.6782 -2.2807 22 6 3.4803 -5.9630 -1.1250 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8468 -3.5434 -0.7752 27 1 2.7774 -6.1903 1.2911 28 1 -0.3458 -6.2111 1.5769 29 1 0.8357 -7.2745 2.5119 30 1 1.9405 -5.2032 3.4728 31 1 0.7592 -4.1392 2.5381 32 1 0.5819 -4.8381 -2.6100 33 1 2.1380 -3.9811 -2.4759 34 1 2.0349 -5.1882 -4.6207 35 1 1.6872 -6.7117 -3.7671 36 1 4.2208 -5.0302 -3.4907 37 1 4.0834 -6.5893 -4.3387 38 1 3.9961 -5.0042 -1.0716 39 1 3.7017 -6.5454 -0.2306 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723968680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:58:51 Heat of formation + Delta-G solvation = -35.909828 kcal Electronic energy + Delta-G solvation = -17949.354516 eV Core-core repulsion = 15278.002002 eV Total energy + Delta-G solvation = -2671.352514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69254 -37.39705 -34.82781 -33.26861 -32.23486 -30.75726 -27.03677 -25.15507 -24.66918 -22.61224 -21.88217 -21.62939 -20.09008 -19.07390 -16.48917 -16.13542 -15.93051 -15.16695 -14.69175 -14.67078 -14.37601 -14.26103 -13.50547 -13.25498 -12.60230 -12.43405 -12.27817 -11.77499 -11.54505 -11.31787 -11.08956 -11.04796 -10.90687 -10.74558 -10.61079 -10.48232 -10.06810 -9.96536 -9.77185 -9.51065 -9.20975 -9.05803 -8.50305 -7.25455 -6.04583 -4.06368 3.30032 3.36603 3.41093 3.99828 4.24318 4.43293 4.80601 4.91689 4.99322 5.06480 5.23503 5.29298 5.31206 5.36269 5.44173 5.60030 5.66298 5.72400 5.75912 5.85027 5.91480 5.98500 6.00536 6.13358 6.20104 6.24125 6.37181 6.42584 6.55780 6.58617 6.74390 7.27000 7.32986 7.42520 7.78340 8.13001 8.40082 8.61778 9.03383 9.58772 11.06306 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.019453 B = 0.007477 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.037313 B = 3744.108796 C = 4662.281607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.198 3.802 10 N -0.681 5.681 11 C 0.120 3.880 12 H 0.058 0.942 13 C -0.131 4.131 14 C -0.193 4.193 15 C -0.160 4.160 16 C -0.129 4.129 17 H 0.076 0.924 18 C -0.123 4.123 19 C -0.152 4.152 20 C 0.060 3.940 21 O -0.388 6.388 22 C 0.066 3.934 23 H 0.261 0.739 24 H -0.015 1.015 25 H 0.027 0.973 26 H 0.327 0.673 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 -12.458 -3.452 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.071 3.929 10 N -0.313 5.313 11 C 0.009 3.991 12 H 0.076 0.924 13 C -0.150 4.150 14 C -0.231 4.231 15 C -0.198 4.198 16 C -0.149 4.149 17 H 0.095 0.905 18 C -0.161 4.161 19 C -0.190 4.190 20 C -0.017 4.017 21 O -0.307 6.307 22 C -0.010 4.010 23 H 0.070 0.930 24 H 0.002 0.998 25 H 0.045 0.955 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.590 -12.482 -2.760 13.278 hybrid contribution -0.215 1.261 -0.889 1.557 sum 3.375 -11.221 -3.649 12.273 Atomic orbital electron populations 1.69958 1.06051 1.26741 1.50961 1.24975 0.94847 0.99298 0.95385 0.86521 0.79861 0.83172 0.77995 1.20788 1.21255 1.19773 1.21192 0.93468 0.90323 1.50227 0.92075 1.19618 0.90466 0.87315 0.95501 1.60672 1.20593 1.00684 1.49329 1.21039 0.97377 0.90207 0.90435 0.92431 1.22286 0.97135 1.01916 0.93688 1.22982 0.97522 0.97063 1.05498 1.22745 1.03426 0.97051 0.96542 1.22114 0.97404 0.99934 0.95459 0.90538 1.21696 1.01647 0.99188 0.93554 1.22162 0.96982 1.00936 0.98937 1.22549 0.95095 0.97204 0.86883 1.87887 1.82570 1.45757 1.14500 1.22697 0.93262 0.97283 0.87756 0.92952 0.99756 0.95526 0.85322 0.88455 0.89424 0.89599 0.89641 0.88383 0.91544 0.90947 0.91110 0.91472 0.93102 0.89418 0.92224 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.32 9.31 -34.44 -0.32 -14.64 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.20 5.03 5.10 -4.97 -0.03 5.00 16 10 N -0.68 -13.96 5.96 -107.99 -0.64 -14.61 16 11 C 0.12 2.07 2.11 -67.72 -0.14 1.92 16 12 H 0.06 1.09 7.35 -51.93 -0.38 0.71 16 13 C -0.13 -2.04 5.09 -90.62 -0.46 -2.51 16 14 C -0.19 -2.71 10.18 -26.73 -0.27 -2.98 16 15 C -0.16 -2.59 10.21 -26.73 -0.27 -2.87 16 16 C -0.13 -1.91 2.19 -90.48 -0.20 -2.11 16 17 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.12 -1.83 5.16 -26.54 -0.14 -1.97 16 19 C -0.15 -1.88 6.13 -26.59 -0.16 -2.04 16 20 C 0.06 0.73 6.84 37.20 0.25 0.99 16 21 O -0.39 -5.61 10.77 -35.23 -0.38 -5.99 16 22 C 0.07 0.95 5.65 37.21 0.21 1.16 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H -0.02 -0.42 8.14 -51.93 -0.42 -0.84 16 25 H 0.03 0.74 7.72 -51.93 -0.40 0.34 16 26 H 0.33 6.51 5.13 -39.29 -0.20 6.31 16 27 H 0.10 1.41 6.21 -51.93 -0.32 1.09 16 28 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.84 7.72 -51.93 -0.40 1.44 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.91 6.60 -51.93 -0.34 0.56 16 39 H 0.09 1.27 6.32 -51.93 -0.33 0.95 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -29.18 305.46 -8.82 -38.01 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.49 Total: 5.80 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.63 Total: -18.54 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.09 Total: -40.47 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.18 -8.82 -38.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723968680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.095 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds