Wall clock time and date at job start Mon Mar 30 2020 21:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.36103 * 2 1 4 4 C 1.54613 * 110.40640 * 237.66543 * 2 1 3 5 5 C 1.53338 * 104.71428 * 217.52768 * 4 2 1 6 6 C 1.54018 * 110.66982 * 120.18499 * 5 4 2 7 7 C 1.55469 * 100.81588 * 156.72829 * 6 5 4 8 8 C 1.54469 * 102.34365 * 326.83376 * 7 6 5 9 9 C 1.53001 * 109.83206 * 261.85019 * 8 7 6 10 10 C 1.50697 * 109.83601 * 140.85816 * 8 7 6 11 11 H 1.07999 * 119.99844 * 359.97438 * 10 8 7 12 12 C 1.37871 * 119.99764 * 180.02562 * 10 8 7 13 13 N 1.31518 * 120.00279 * 359.97438 * 12 10 8 14 14 Si 1.86810 * 119.99930 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46784 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47179 * 119.99785 * 14 12 10 17 17 H 1.48504 * 109.46818 * 239.99924 * 14 12 10 18 18 O 1.42542 * 111.66858 * 238.51822 * 5 4 2 19 19 C 1.53463 * 106.01443 * 0.23501 * 5 4 2 20 20 N 1.48649 * 110.40627 * 122.45495 * 2 1 3 21 21 C 1.46901 * 110.99740 * 277.33419 * 20 2 1 22 22 H 1.09002 * 109.47153 * 182.33517 * 1 2 3 23 23 H 1.09001 * 109.46832 * 62.33708 * 1 2 3 24 24 H 1.09004 * 109.47261 * 302.33689 * 1 2 3 25 25 H 1.09002 * 110.38893 * 336.33246 * 4 2 1 26 26 H 1.08996 * 110.39190 * 98.71987 * 4 2 1 27 27 H 1.09003 * 111.14933 * 274.61559 * 6 5 4 28 28 H 1.09002 * 111.15317 * 38.83328 * 6 5 4 29 29 H 1.09000 * 110.83131 * 85.04715 * 7 6 5 30 30 H 1.09005 * 110.83116 * 208.62094 * 7 6 5 31 31 H 1.09000 * 109.47515 * 60.00300 * 9 8 7 32 32 H 1.09002 * 109.47009 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47465 * 299.99749 * 9 8 7 34 34 H 0.97000 * 119.99663 * 180.02562 * 13 12 10 35 35 H 1.08996 * 110.44903 * 141.96842 * 19 5 4 36 36 H 1.08995 * 110.45050 * 264.38956 * 19 5 4 37 37 H 1.09002 * 109.47282 * 60.00441 * 21 20 2 38 38 H 1.09001 * 109.46688 * 179.97438 * 21 20 2 39 39 H 1.08997 * 109.47275 * 299.99768 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0691 -0.7751 -1.2244 5 6 3.3072 -1.5143 -0.7031 6 6 3.1426 -3.0364 -0.8714 7 6 4.6293 -3.4910 -0.8835 8 6 5.3336 -2.2988 -1.5680 9 6 5.5519 -2.6065 -3.0508 10 6 6.6576 -2.0340 -0.8985 11 1 6.9748 -2.6471 -0.0679 12 6 7.4633 -1.0086 -1.3458 13 7 7.0767 -0.2617 -2.3570 14 14 9.1041 -0.6799 -0.5155 15 1 9.3037 -1.6527 0.5886 16 1 10.1991 -0.8253 -1.5080 17 1 9.1135 0.7000 0.0334 18 8 4.4799 -1.1537 -1.4288 19 6 3.4267 -1.1454 0.7817 20 7 2.0483 -0.7476 1.1756 21 6 2.0677 0.1026 2.3734 22 1 -0.3633 -1.0268 0.0419 23 1 -0.3633 0.4771 -0.9102 24 1 -0.3634 0.5497 0.8683 25 1 1.3244 -1.4865 -1.5815 26 1 2.3467 -0.0833 -2.0197 27 1 2.6058 -3.4696 -0.0274 28 1 2.6500 -3.2770 -1.8135 29 1 5.0006 -3.6296 0.1319 30 1 4.7513 -4.4019 -1.4697 31 1 4.5892 -2.7801 -3.5314 32 1 6.0486 -1.7616 -3.5279 33 1 6.1732 -3.4966 -3.1496 34 1 7.6438 0.4595 -2.6718 35 1 3.7553 -2.0069 1.3629 36 1 4.1176 -0.3126 0.9128 37 1 1.0559 0.4428 2.5939 38 1 2.4507 -0.4692 3.2186 39 1 2.7106 0.9649 2.1964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686236708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:25 Heat of formation + Delta-G solvation = -61.075217 kcal Electronic energy + Delta-G solvation = -18673.191034 eV Core-core repulsion = 16000.747267 eV Total energy + Delta-G solvation = -2672.443767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21247 -38.62712 -34.96789 -32.91303 -32.79583 -32.17960 -29.19274 -27.44573 -26.92161 -25.42906 -23.96361 -21.45426 -21.02224 -20.68254 -18.44212 -17.25209 -16.70866 -16.40776 -15.59827 -15.49172 -15.27068 -14.90006 -14.34596 -14.01957 -13.92321 -13.70145 -13.40543 -13.14422 -12.98198 -12.77666 -12.75507 -12.59941 -12.29434 -12.14739 -12.05016 -11.97792 -11.95181 -11.86447 -11.23159 -11.01660 -10.91167 -10.55560 -9.73766 -9.50512 -8.01872 -6.24520 1.36752 1.39362 1.49553 2.41893 2.93202 3.18094 3.56807 3.70693 3.82634 4.08380 4.13056 4.24508 4.38215 4.48815 4.55016 4.58879 4.67825 4.71797 4.81684 4.86678 4.92926 4.96835 4.99146 5.00850 5.05766 5.11469 5.13093 5.27421 5.30761 5.40129 5.43923 5.55072 5.69321 5.87718 6.09473 6.14550 6.36591 6.70640 7.20457 7.51689 8.98347 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.008393 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.802299 B = 3335.356306 C = 3717.302711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.057 3.943 3 H 0.036 0.964 4 C -0.111 4.111 5 C 0.088 3.912 6 C -0.124 4.124 7 C -0.137 4.137 8 C 0.214 3.786 9 C -0.132 4.132 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.033 3.967 13 N -0.890 5.890 14 Si 0.944 3.056 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.286 1.286 18 O -0.375 6.375 19 C 0.037 3.963 20 N -0.506 5.506 21 C 0.013 3.987 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 -1.627 4.959 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 H 0.054 0.946 4 C -0.149 4.149 5 C 0.047 3.953 6 C -0.161 4.161 7 C -0.175 4.175 8 C 0.177 3.823 9 C -0.190 4.190 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.169 4.169 13 N -0.527 5.527 14 Si 0.769 3.231 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.212 1.212 18 O -0.294 6.294 19 C -0.092 4.092 20 N -0.231 5.231 21 C -0.136 4.136 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.924 -1.741 4.899 13.008 hybrid contribution 1.953 1.055 0.217 2.231 sum -9.971 -0.686 5.116 11.228 Atomic orbital electron populations 1.21641 0.91276 1.02907 1.02282 1.22742 0.97630 0.94810 0.89948 0.94624 1.22422 0.95768 0.99413 0.97305 1.22267 0.87512 0.94808 0.90715 1.23055 0.96347 0.94171 1.02571 1.23165 0.95012 0.98815 1.00518 1.19789 0.88156 0.82104 0.92230 1.21856 0.98413 1.00505 0.98217 1.21671 1.03360 1.16354 1.17070 0.93013 1.25700 1.00598 0.95557 0.95078 1.70111 1.37598 1.19017 1.26013 0.85753 0.80623 0.77739 0.78937 1.19117 1.20249 1.21250 1.88594 1.30228 1.36579 1.74012 1.23226 0.89718 0.99485 0.96758 1.65446 1.17055 1.36851 1.03707 1.22577 1.02430 0.95319 0.93237 0.91425 0.91157 0.91829 0.88796 0.92325 0.89171 0.90521 0.92416 0.90812 0.95292 0.92349 0.94038 0.93448 0.90573 0.96223 0.89208 0.90781 0.96611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.32 71.98 0.67 -2.00 16 2 C 0.06 1.70 2.91 45.13 0.13 1.83 16 3 H 0.04 1.15 7.97 -2.39 -0.02 1.14 16 4 C -0.11 -3.78 6.02 31.26 0.19 -3.59 16 5 C 0.09 3.54 1.14 -10.18 -0.01 3.53 16 6 C -0.12 -4.38 5.74 31.79 0.18 -4.19 16 7 C -0.14 -5.62 5.88 31.94 0.19 -5.44 16 8 C 0.21 10.79 0.83 -11.04 -0.01 10.78 16 9 C -0.13 -6.54 8.51 71.98 0.61 -5.92 16 10 C -0.55 -30.51 8.23 25.60 0.21 -30.30 16 11 H 0.05 2.86 7.52 -2.91 -0.02 2.83 16 12 C 0.03 1.84 5.26 84.65 0.45 2.28 16 13 N -0.89 -52.63 10.92 21.45 0.23 -52.40 16 14 Si 0.94 44.43 29.54 68.60 2.03 46.46 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 17 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 18 O -0.37 -19.42 9.57 -148.98 -1.43 -20.85 16 19 C 0.04 1.42 5.64 86.10 0.49 1.90 16 20 N -0.51 -15.69 5.34 -883.28 -4.72 -20.41 16 21 C 0.01 0.34 9.45 127.69 1.21 1.55 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.20 7.57 -2.38 -0.02 1.19 16 25 H 0.09 2.72 7.32 -2.39 -0.02 2.71 16 26 H 0.06 2.19 8.02 -2.39 -0.02 2.17 16 27 H 0.09 2.80 7.96 -2.39 -0.02 2.78 16 28 H 0.08 2.50 7.92 -2.39 -0.02 2.49 16 29 H 0.06 2.39 7.61 -2.39 -0.02 2.37 16 30 H 0.07 2.75 7.82 -2.38 -0.02 2.73 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 3.26 6.01 -2.39 -0.01 3.24 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.08 2.91 7.68 -2.39 -0.02 2.90 16 36 H 0.02 0.88 7.88 -2.39 -0.02 0.86 16 37 H 0.09 1.88 7.50 -2.39 -0.02 1.86 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.02 0.44 7.98 -2.39 -0.02 0.42 16 Total: -1.00 -63.29 301.38 1.41 -61.87 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.99 Total: 14.90 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.30 Total: -29.58 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -4.48 Total: -72.80 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.43 Total: -20.85 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.29 1.41 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686236708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.798 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds