Wall clock time and date at job start Mon Mar 30 2020 21:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 N 1.46497 * 109.47191 * 240.00259 * 2 1 3 5 5 C 1.34768 * 120.00280 * 59.99837 * 4 2 1 6 6 O 1.21439 * 120.00241 * 0.02562 * 5 4 2 7 7 C 1.48829 * 120.00200 * 180.02562 * 5 4 2 8 8 O 1.21506 * 120.00181 * 0.02562 * 7 5 4 9 9 N 1.34781 * 120.00264 * 179.97438 * 7 5 4 10 10 C 1.36118 * 120.00342 * 179.97438 * 9 7 5 11 11 H 1.08002 * 119.99596 * 0.02562 * 10 9 7 12 12 C 1.39585 * 120.00309 * 179.97438 * 10 9 7 13 13 N 1.31017 * 119.99557 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00246 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47354 * 90.00020 * 14 12 10 16 16 H 1.48500 * 109.47418 * 210.00302 * 14 12 10 17 17 H 1.48504 * 109.47225 * 330.00041 * 14 12 10 18 18 C 1.53003 * 109.47267 * 119.99875 * 2 1 3 19 19 C 1.53001 * 117.51964 * 236.28555 * 18 2 1 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 2 21 21 H 1.09004 * 109.47051 * 299.99965 * 1 2 3 22 22 H 1.08991 * 109.47188 * 59.99959 * 1 2 3 23 23 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47344 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47562 * 299.99950 * 3 2 1 26 26 H 1.09004 * 109.47159 * 60.00101 * 3 2 1 27 27 H 0.97003 * 119.99690 * 239.99696 * 4 2 1 28 28 H 0.96998 * 119.99809 * 0.02562 * 9 7 5 29 29 H 0.97002 * 119.99821 * 179.97438 * 13 12 10 30 30 H 1.09002 * 115.54973 * 90.58338 * 18 2 1 31 31 H 1.09001 * 117.49733 * 214.97413 * 19 18 2 32 32 H 1.08995 * 117.49577 * 359.97438 * 19 18 2 33 33 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 34 34 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6928 -0.2301 -2.4202 6 8 0.9950 0.7575 -2.5317 7 6 2.1884 -0.9320 -3.6354 8 8 2.8862 -1.9204 -3.5240 9 7 1.8624 -0.4718 -4.8596 10 6 2.3162 -1.1135 -5.9710 11 1 2.9371 -1.9916 -5.8719 12 6 1.9781 -0.6372 -7.2388 13 7 1.2244 0.4277 -7.3589 14 14 2.6002 -1.5181 -8.7640 15 1 1.6222 -2.5603 -9.1672 16 1 2.7643 -0.5394 -9.8686 17 1 3.9087 -2.1551 -8.4686 18 6 2.0400 -0.7212 1.2493 19 6 2.9858 0.0485 2.1734 20 6 1.5432 -0.2199 2.6068 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 2.5760 -1.4792 -1.1071 28 1 1.3050 0.3170 -4.9486 29 1 0.9897 0.7589 -8.2399 30 1 2.2062 -1.7928 1.1386 31 1 3.7741 -0.5166 2.6706 32 1 3.2451 1.0689 1.8912 33 1 0.8532 0.6240 2.6098 34 1 1.3825 -0.9617 3.3891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232529990.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:07 Heat of formation + Delta-G solvation = -72.099808 kcal Electronic energy + Delta-G solvation = -17337.025938 eV Core-core repulsion = 14462.845103 eV Total energy + Delta-G solvation = -2874.180835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62270 -39.90433 -38.59142 -36.40938 -35.30259 -33.44616 -31.96991 -28.40383 -27.86159 -25.71034 -23.98770 -23.01841 -20.96729 -20.36883 -20.21413 -18.75187 -17.50825 -17.30329 -16.60606 -16.49197 -15.79361 -15.49501 -15.27822 -14.79332 -14.69117 -14.25315 -13.70854 -13.63557 -13.21177 -13.02491 -12.91599 -12.56522 -12.48734 -12.15304 -12.09840 -11.94100 -11.66406 -11.65995 -11.29191 -11.06605 -10.27232 -10.11086 -10.09966 -8.65665 -6.10804 0.64066 1.40960 1.47293 1.55677 1.83011 2.29324 2.39732 2.91630 3.16248 3.29410 3.59887 3.96581 4.02330 4.06200 4.11445 4.29650 4.43075 4.66919 4.72080 4.84733 4.92586 4.94073 5.04650 5.14022 5.25107 5.30851 5.32771 5.39230 5.56876 5.69780 6.22457 6.44422 6.83448 7.06741 7.30046 7.81169 8.50166 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.057059 B = 0.005023 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.604768 B = 5572.592681 C = 5808.298085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.198 3.802 3 C -0.162 4.162 4 N -0.688 5.688 5 C 0.522 3.478 6 O -0.555 6.555 7 C 0.388 3.612 8 O -0.619 6.619 9 N -0.512 5.512 10 C -0.347 4.347 11 H 0.097 0.903 12 C -0.004 4.004 13 N -0.896 5.896 14 Si 1.010 2.990 15 H -0.265 1.265 16 H -0.266 1.266 17 H -0.264 1.264 18 C -0.175 4.175 19 C -0.177 4.177 20 C -0.152 4.152 21 H 0.089 0.911 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.412 0.588 28 H 0.401 0.599 29 H 0.289 0.711 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 0.364 15.724 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.114 3.886 3 C -0.220 4.220 4 N -0.341 5.341 5 C 0.305 3.695 6 O -0.434 6.434 7 C 0.173 3.827 8 O -0.509 6.509 9 N -0.146 5.146 10 C -0.476 4.476 11 H 0.115 0.885 12 C -0.208 4.208 13 N -0.534 5.534 14 Si 0.831 3.169 15 H -0.190 1.190 16 H -0.191 1.191 17 H -0.188 1.188 18 C -0.193 4.193 19 C -0.214 4.214 20 C -0.189 4.189 21 H 0.108 0.892 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.249 0.751 28 H 0.235 0.765 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.130 0.566 15.588 15.599 hybrid contribution 0.125 -0.258 -0.998 1.038 sum 0.255 0.308 14.591 14.596 Atomic orbital electron populations 1.22172 0.94016 1.02304 1.03100 1.20017 0.94219 0.92056 0.82325 1.22302 1.01229 0.95344 1.03098 1.45848 1.52354 1.31889 1.03967 1.19936 0.80380 0.83965 0.85219 1.90627 1.38625 1.26767 1.87345 1.19783 0.89179 0.88807 0.84965 1.90540 1.44312 1.29522 1.86555 1.41650 1.42085 1.26257 1.04572 1.19966 1.31449 1.12085 0.84136 0.88477 1.26526 0.95457 0.96504 1.02348 1.69553 1.33896 1.22499 1.27468 0.84700 0.78983 0.77897 0.75370 1.18952 1.19074 1.18832 1.22352 1.07250 0.99563 0.90173 1.23270 0.93954 1.01993 1.02181 1.23066 0.97128 1.03604 0.95143 0.89209 0.93244 0.92588 0.92130 0.93203 0.89252 0.75147 0.76467 0.90128 0.86970 0.87662 0.87945 0.87870 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 8.18 71.98 0.59 -3.67 16 2 C 0.20 5.33 0.92 3.60 0.00 5.34 16 3 C -0.16 -4.31 6.97 71.98 0.50 -3.81 16 4 N -0.69 -23.70 5.10 -424.84 -2.17 -25.87 16 5 C 0.52 22.93 7.29 87.08 0.63 23.57 16 6 O -0.55 -25.62 12.67 -3.52 -0.04 -25.67 16 7 C 0.39 20.22 7.82 87.08 0.68 20.90 16 8 O -0.62 -34.31 16.03 -3.73 -0.06 -34.37 16 9 N -0.51 -28.48 5.25 -308.87 -1.62 -30.10 16 10 C -0.35 -19.76 9.67 84.35 0.82 -18.95 16 11 H 0.10 5.70 7.15 -2.91 -0.02 5.67 16 12 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 13 N -0.90 -48.58 13.03 21.77 0.28 -48.30 16 14 Si 1.01 41.12 29.56 68.60 2.03 43.15 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 C -0.17 -3.47 5.34 -10.79 -0.06 -3.53 16 19 C -0.18 -2.84 9.50 30.59 0.29 -2.55 16 20 C -0.15 -2.19 9.40 30.60 0.29 -1.91 16 21 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 22 H 0.05 1.66 6.17 -2.39 -0.01 1.65 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.56 7.23 -2.39 -0.02 1.55 16 25 H 0.05 1.67 6.17 -2.39 -0.01 1.65 16 26 H 0.09 1.82 7.18 -2.39 -0.02 1.80 16 27 H 0.41 13.57 7.86 -92.71 -0.73 12.84 16 28 H 0.40 22.48 7.35 -92.71 -0.68 21.80 16 29 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 30 H 0.11 2.19 8.04 -2.39 -0.02 2.17 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.68 5.82 -2.39 -0.01 1.66 16 33 H 0.10 1.38 7.08 -2.39 -0.02 1.36 16 34 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -65.30 283.31 2.37 -62.93 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.27 Total: 42.60 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 4.22 Total: 15.64 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -3.50 Total: -104.27 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -0.10 Total: -60.04 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -65.30 2.37 -62.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232529990.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.171 kcal (2) G-P(sol) polarization free energy of solvation -65.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds