Wall clock time and date at job start Mon Mar 30 2020 21:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47302 * 2 1 4 4 C 1.42900 * 113.99902 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47106 * 60.00442 * 4 3 2 6 6 C 1.53003 * 109.47170 * 300.00011 * 4 3 2 7 7 C 1.50697 * 109.46903 * 180.02562 * 4 3 2 8 8 N 1.29949 * 126.29094 * 179.97438 * 7 4 3 9 9 O 1.21299 * 110.25253 * 180.02562 * 8 7 4 10 10 C 1.33638 * 109.81146 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54638 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02308 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 N 1.31126 * 106.90184 * 0.22991 * 10 9 8 21 21 H 1.09003 * 109.46526 * 60.00194 * 1 2 3 22 22 H 1.08994 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47104 * 300.00116 * 1 2 3 24 24 H 1.09000 * 109.47104 * 239.99884 * 2 1 3 25 25 H 1.09003 * 109.46526 * 119.99806 * 2 1 3 26 26 H 1.08995 * 109.47418 * 180.02562 * 5 4 3 27 27 H 1.09006 * 109.46788 * 299.99348 * 5 4 3 28 28 H 1.09000 * 109.47529 * 59.99320 * 5 4 3 29 29 H 1.08996 * 109.47119 * 299.99994 * 6 4 3 30 30 H 1.08996 * 109.46925 * 60.00127 * 6 4 3 31 31 H 1.09003 * 109.46946 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47205 * 150.02402 * 11 10 9 33 33 H 1.08997 * 109.47395 * 30.02894 * 11 10 9 34 34 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9968 0.7812 -1.2483 6 6 3.9958 0.7814 1.2502 7 6 3.8196 2.9160 0.0012 8 7 5.0299 3.3891 0.0022 9 8 5.0067 4.6019 0.0030 10 6 3.7410 5.0307 0.0018 11 6 3.2796 6.4653 0.0027 12 6 3.1245 6.9422 1.4238 13 1 3.3391 6.2735 2.2443 14 6 2.7087 8.2324 1.6766 15 7 2.4526 9.0483 0.6774 16 14 2.5172 8.8238 3.4380 17 1 3.7991 9.4098 3.9056 18 1 1.4497 9.8541 3.5010 19 1 2.1506 7.6774 4.3080 20 7 2.9774 3.9647 0.0054 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 5.0834 0.8668 -1.2477 27 1 3.7158 -0.2720 -1.2483 28 1 3.5944 1.2646 -2.1386 29 1 3.5927 1.2651 2.1399 30 1 3.7147 -0.2716 1.2502 31 1 5.0824 0.8679 1.2508 32 1 2.3215 6.5391 -0.5119 33 1 4.0159 7.0841 -0.5100 34 1 2.1598 9.9558 0.8553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233721727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:49 Heat of formation + Delta-G solvation = 9.041380 kcal Electronic energy + Delta-G solvation = -17307.657590 eV Core-core repulsion = 14436.995301 eV Total energy + Delta-G solvation = -2870.662289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.74914 -39.04756 -35.14762 -34.09171 -32.90467 -31.39538 -30.54776 -28.31937 -27.52846 -24.58505 -23.98597 -22.73324 -21.51930 -19.55870 -17.46070 -17.36698 -16.29006 -15.93311 -15.65123 -15.29381 -14.73735 -13.89450 -13.66921 -13.25968 -12.58577 -12.52358 -12.46327 -12.39417 -12.11001 -11.87010 -11.82014 -11.34519 -11.30743 -11.04094 -10.79826 -10.72859 -10.68743 -10.23194 -10.05461 -9.87138 -9.50752 -8.88890 -8.58573 -6.22069 -4.27293 1.95988 3.02603 3.26295 3.32456 3.36145 3.37941 3.82583 4.13139 4.35370 4.66202 4.87380 5.04850 5.06132 5.15549 5.21326 5.26873 5.37007 5.40049 5.54706 5.63790 5.74344 5.86569 5.94373 6.01006 6.11930 6.13622 6.61791 6.73167 7.15500 7.23389 7.26716 7.71711 7.95567 8.72824 8.97891 9.37229 10.88461 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.005799 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.380599 B = 4827.477768 C = 5229.927914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.214 3.786 5 C -0.172 4.172 6 C -0.173 4.173 7 C 0.169 3.831 8 N -0.403 5.403 9 O 0.061 5.939 10 C 0.233 3.767 11 C 0.101 3.899 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.272 1.272 20 N -0.483 5.483 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -16.068 -1.973 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.173 3.827 5 C -0.231 4.231 6 C -0.232 4.232 7 C -0.104 4.104 8 N -0.117 5.117 9 O 0.006 5.994 10 C 0.015 3.985 11 C 0.063 3.937 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.197 1.197 20 N -0.216 5.216 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.686 -16.437 -2.022 16.575 hybrid contribution 0.013 0.343 0.938 0.999 sum 0.699 -16.094 -1.084 16.146 Atomic orbital electron populations 1.21716 0.93538 1.01832 1.03590 1.22558 0.95723 0.84316 1.00031 1.88155 1.18357 1.25739 1.94962 1.19100 0.82432 0.85520 0.95657 1.22403 1.02392 1.00722 0.97541 1.22410 1.02411 1.00693 0.97645 1.25046 0.85891 0.97332 1.02128 1.74422 1.21911 0.91763 1.23567 1.85251 1.32599 1.15083 1.66453 1.30276 0.77938 1.00820 0.89482 1.18202 0.98506 0.76885 1.00132 1.20802 1.47569 0.97639 0.90122 0.92082 1.24921 0.94560 0.96168 0.98048 1.69928 1.44792 1.06881 1.30996 0.86355 0.78017 0.78595 0.83743 1.20286 1.20852 1.19685 1.72043 1.31128 0.96475 1.21999 0.91708 0.91322 0.91638 0.93194 0.93164 0.90674 0.91130 0.91334 0.91237 0.91129 0.90674 0.91284 0.92398 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.58 5.86 37.16 0.22 0.80 16 3 O -0.35 -5.87 9.77 -35.23 -0.34 -6.21 16 4 C 0.21 3.42 1.10 -91.77 -0.10 3.32 16 5 C -0.17 -2.21 8.23 37.16 0.31 -1.91 16 6 C -0.17 -2.32 8.23 37.16 0.31 -2.01 16 7 C 0.17 3.46 6.51 -156.36 -1.02 2.44 16 8 N -0.40 -8.34 12.16 30.90 0.38 -7.97 16 9 O 0.06 1.36 11.31 18.12 0.20 1.57 16 10 C 0.23 5.48 7.70 -13.06 -0.10 5.37 16 11 C 0.10 2.55 5.60 -29.04 -0.16 2.39 16 12 C -0.52 -14.34 9.09 -34.44 -0.31 -14.65 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -24.99 13.29 55.43 0.74 -24.26 16 16 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 N -0.48 -11.33 11.28 -9.87 -0.11 -11.44 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.50 6.42 -51.93 -0.33 0.16 16 25 H 0.05 0.51 6.42 -51.93 -0.33 0.18 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.72 6.54 -51.93 -0.34 0.38 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -30.06 291.98 -5.03 -35.10 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.69 Total: -3.52 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.58 Total: -3.71 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.00 Total: -43.66 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.14 Total: -4.64 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.06 -5.03 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233721727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.139 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds