Wall clock time and date at job start Mon Mar 30 2020 21:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.47302 * 2 1 4 4 C 1.42900 * 113.99902 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47106 * 60.00442 * 4 3 2 6 6 C 1.53003 * 109.47170 * 300.00011 * 4 3 2 7 7 C 1.50697 * 109.46903 * 180.02562 * 4 3 2 8 8 N 1.29949 * 126.29094 * 179.97438 * 7 4 3 9 9 O 1.21299 * 110.25253 * 180.02562 * 8 7 4 10 10 C 1.33638 * 109.81146 * 359.97438 * 9 8 7 11 11 C 1.50697 * 126.54638 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02308 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 N 1.31126 * 106.90184 * 0.22991 * 10 9 8 21 21 H 1.09003 * 109.46526 * 60.00194 * 1 2 3 22 22 H 1.08994 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47104 * 300.00116 * 1 2 3 24 24 H 1.09000 * 109.47104 * 239.99884 * 2 1 3 25 25 H 1.09003 * 109.46526 * 119.99806 * 2 1 3 26 26 H 1.08995 * 109.47418 * 180.02562 * 5 4 3 27 27 H 1.09006 * 109.46788 * 299.99348 * 5 4 3 28 28 H 1.09000 * 109.47529 * 59.99320 * 5 4 3 29 29 H 1.08996 * 109.47119 * 299.99994 * 6 4 3 30 30 H 1.08996 * 109.46925 * 60.00127 * 6 4 3 31 31 H 1.09003 * 109.46946 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47205 * 150.02402 * 11 10 9 33 33 H 1.08997 * 109.47395 * 30.02894 * 11 10 9 34 34 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9968 0.7812 -1.2483 6 6 3.9958 0.7814 1.2502 7 6 3.8196 2.9160 0.0012 8 7 5.0299 3.3891 0.0022 9 8 5.0067 4.6019 0.0030 10 6 3.7410 5.0307 0.0018 11 6 3.2796 6.4653 0.0027 12 6 3.1245 6.9422 1.4238 13 1 3.3391 6.2735 2.2443 14 6 2.7087 8.2324 1.6766 15 7 2.4526 9.0483 0.6774 16 14 2.5172 8.8238 3.4380 17 1 3.7991 9.4098 3.9056 18 1 1.4497 9.8541 3.5010 19 1 2.1506 7.6774 4.3080 20 7 2.9774 3.9647 0.0054 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 5.0834 0.8668 -1.2477 27 1 3.7158 -0.2720 -1.2483 28 1 3.5944 1.2646 -2.1386 29 1 3.5927 1.2651 2.1399 30 1 3.7147 -0.2716 1.2502 31 1 5.0824 0.8679 1.2508 32 1 2.3215 6.5391 -0.5119 33 1 4.0159 7.0841 -0.5100 34 1 2.1598 9.9558 0.8553 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233721727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:49 Heat of formation + Delta-G solvation = -11.697794 kcal Electronic energy + Delta-G solvation = -17308.556908 eV Core-core repulsion = 14436.995301 eV Total energy + Delta-G solvation = -2871.561607 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.46449 -40.18370 -36.79801 -35.89311 -34.53253 -32.95033 -31.58191 -30.24864 -28.54006 -26.04111 -25.86611 -24.17746 -22.87714 -20.96137 -19.27754 -18.85103 -18.29700 -17.28797 -16.73965 -16.61900 -16.54433 -15.18497 -14.92288 -14.67411 -14.46839 -14.17719 -13.44340 -13.43161 -13.27205 -13.12854 -12.96190 -12.90798 -12.84429 -12.61470 -12.59572 -12.18326 -12.12942 -11.89285 -11.77774 -11.72649 -10.82868 -10.67876 -10.45889 -8.31757 -6.45244 0.19714 1.30319 1.43377 1.43986 1.55284 1.96985 2.19177 2.39181 2.72981 3.03984 3.44812 3.66956 3.81524 4.10714 4.17573 4.33065 4.38248 4.48772 4.49735 4.63525 4.64149 4.80589 4.92043 4.95732 5.00168 5.03178 5.08647 5.14193 5.22482 5.29632 5.57741 5.86883 6.22806 6.58732 7.22027 7.23392 8.79320 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.005799 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.380599 B = 4827.477768 C = 5229.927914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.390 6.390 4 C 0.206 3.794 5 C -0.165 4.165 6 C -0.168 4.168 7 C 0.172 3.828 8 N -0.400 5.400 9 O 0.053 5.947 10 C 0.226 3.774 11 C 0.111 3.889 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.022 3.978 15 N -0.916 5.916 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.507 5.507 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -17.947 -1.277 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.309 6.309 4 C 0.164 3.836 5 C -0.223 4.223 6 C -0.225 4.225 7 C -0.101 4.101 8 N -0.115 5.115 9 O 0.001 5.999 10 C 0.007 3.993 11 C 0.072 3.928 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.179 4.179 15 N -0.554 5.554 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.241 5.241 21 H 0.071 0.929 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.789 -18.310 -1.337 18.375 hybrid contribution -0.047 0.842 0.679 1.083 sum 0.742 -17.468 -0.658 17.496 Atomic orbital electron populations 1.21766 0.93094 1.03519 1.02254 1.22892 0.96164 0.82436 1.01934 1.88112 1.18534 1.28951 1.95346 1.19497 0.82959 0.82852 0.98276 1.22382 1.02296 1.02407 0.95247 1.22398 1.02300 1.02455 0.95392 1.26013 0.85089 0.99047 0.99995 1.74390 1.22110 0.90966 1.24077 1.85235 1.31939 1.15947 1.66806 1.29863 0.78650 1.00368 0.90413 1.17904 0.97665 0.78073 0.99162 1.21008 1.48425 0.98144 0.90765 0.93047 1.25744 0.93822 0.96047 1.02238 1.70008 1.44978 1.07359 1.33016 0.85353 0.78557 0.78055 0.78553 1.19118 1.19815 1.19791 1.72039 1.32177 0.97348 1.22499 0.92884 0.88090 0.93148 0.90983 0.91301 0.90361 0.87403 0.92608 0.93149 0.87304 0.90389 0.92893 0.92657 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.04 0.84 5.86 71.98 0.42 1.26 16 3 O -0.39 -12.42 9.77 -148.98 -1.46 -13.88 16 4 C 0.21 6.23 1.10 -11.54 -0.01 6.21 16 5 C -0.17 -3.82 8.23 71.98 0.59 -3.22 16 6 C -0.17 -4.08 8.23 71.98 0.59 -3.48 16 7 C 0.17 7.00 6.51 138.46 0.90 7.90 16 8 N -0.40 -16.54 12.16 -60.31 -0.73 -17.27 16 9 O 0.05 2.38 11.31 74.89 0.85 3.23 16 10 C 0.23 10.91 7.70 88.38 0.68 11.59 16 11 C 0.11 5.77 5.60 29.10 0.16 5.94 16 12 C -0.54 -30.52 9.09 25.60 0.23 -30.29 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.02 1.22 5.46 84.66 0.46 1.68 16 15 N -0.92 -51.88 13.29 21.45 0.28 -51.60 16 16 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 N -0.51 -24.19 11.28 -303.20 -3.42 -27.61 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.14 6.42 -2.39 -0.02 1.13 16 25 H 0.07 1.14 6.42 -2.39 -0.02 1.12 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.11 1.66 6.54 -2.38 -0.02 1.64 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.78 6.54 -2.39 -0.02 1.76 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 2.89 8.14 -2.38 -0.02 2.87 16 33 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -65.19 291.98 3.42 -61.77 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.09 Total: 4.83 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.78 Total: -4.50 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -3.87 Total: -96.48 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.61 Total: -10.65 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.19 3.42 -61.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233721727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.072 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds