Wall clock time and date at job start Mon Mar 30 2020 21:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47237 * 299.99826 * 4 3 2 6 6 C 1.53000 * 109.47634 * 60.00037 * 4 3 2 7 7 C 1.53005 * 109.46612 * 64.99470 * 6 4 3 8 8 C 1.50700 * 109.47140 * 180.02562 * 4 3 2 9 9 N 1.30458 * 126.07435 * 240.02728 * 8 4 3 10 10 O 1.21280 * 110.68720 * 179.97438 * 9 8 4 11 11 C 1.34752 * 109.53166 * 359.97438 * 10 9 8 12 12 C 1.40335 * 126.79206 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00375 * 179.97438 * 12 11 10 14 14 C 1.40466 * 120.00326 * 359.97438 * 12 11 10 15 15 N 1.30513 * 119.99593 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00324 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47204 * 89.99856 * 16 14 12 18 18 H 1.48500 * 109.46994 * 209.99994 * 16 14 12 19 19 H 1.48500 * 109.46821 * 329.99860 * 16 14 12 20 20 N 1.33335 * 106.41084 * 359.74428 * 11 10 9 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 26 26 H 1.09003 * 109.46983 * 60.00205 * 5 4 3 27 27 H 1.09003 * 109.46954 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.47205 * 300.00454 * 5 4 3 29 29 H 1.08992 * 109.47705 * 184.99611 * 6 4 3 30 30 H 1.09003 * 109.47122 * 305.00584 * 6 4 3 31 31 H 1.09004 * 109.46640 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47690 * 300.00431 * 7 6 4 33 33 H 1.09001 * 109.47054 * 60.01184 * 7 6 4 34 34 H 0.96996 * 119.99886 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9967 0.7813 1.2484 6 6 3.9957 0.7817 -1.2501 7 6 3.5292 1.5376 -2.4959 8 6 3.8194 2.9162 0.0001 9 7 4.5260 3.5231 -0.9133 10 8 4.6719 4.6943 -0.6341 11 6 4.0480 4.9611 0.5301 12 6 3.9872 6.1999 1.1865 13 1 3.4530 6.2905 2.1208 14 6 4.6212 7.3223 0.6285 15 7 5.2672 7.2128 -0.5002 16 14 4.5398 8.9715 1.5019 17 1 5.6892 9.0953 2.4339 18 1 4.5952 10.0657 0.4995 19 1 3.2702 9.0645 2.2666 20 7 3.4955 3.8162 0.9323 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.7157 -0.2719 1.2483 27 1 5.0833 0.8678 1.2481 28 1 3.5943 1.2646 2.1386 29 1 5.0848 0.7895 -1.2070 30 1 3.6413 -0.2481 -1.2961 31 1 3.9313 1.0540 -3.3861 32 1 2.4401 1.5298 -2.5391 33 1 3.8837 2.5674 -2.4500 34 1 5.7047 7.9879 -0.8858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233751361.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:54 Heat of formation + Delta-G solvation = -23.352166 kcal Electronic energy + Delta-G solvation = -17858.056660 eV Core-core repulsion = 14985.989682 eV Total energy + Delta-G solvation = -2872.066979 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.05881 -40.21905 -36.08205 -35.94347 -34.50393 -32.00845 -31.93983 -30.78406 -28.46545 -25.60548 -24.38814 -23.57798 -23.05442 -21.27146 -19.55192 -17.97685 -17.74593 -17.26489 -16.73702 -16.58336 -16.06727 -15.29584 -14.79724 -14.46974 -14.20099 -13.72732 -13.51522 -13.41781 -13.22472 -13.08104 -12.95660 -12.79744 -12.68446 -12.24083 -12.05535 -11.96599 -11.83045 -11.81925 -11.59888 -11.30892 -10.90163 -10.36388 -10.22861 -8.94526 -7.06631 0.97281 1.40769 1.49256 1.60676 1.95126 2.15976 2.74959 3.05117 3.22294 3.44180 3.65159 3.85234 4.16089 4.31473 4.37344 4.41630 4.44451 4.48738 4.60457 4.72497 4.81888 4.89717 4.94745 4.97206 5.03928 5.14479 5.23180 5.27748 5.32362 5.70121 5.88636 6.10084 6.30976 6.35939 6.47492 8.07847 8.32087 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.006389 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.885011 B = 4381.522448 C = 4678.972319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 O -0.395 6.395 4 C 0.213 3.787 5 C -0.159 4.159 6 C -0.129 4.129 7 C -0.159 4.159 8 C 0.180 3.820 9 N -0.468 5.468 10 O 0.010 5.990 11 C 0.269 3.731 12 C -0.436 4.436 13 H 0.119 0.881 14 C 0.030 3.970 15 N -0.796 5.796 16 Si 1.021 2.979 17 H -0.252 1.252 18 H -0.258 1.258 19 H -0.250 1.250 20 N -0.627 5.627 21 H 0.102 0.898 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -8.594 0.785 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 O -0.315 6.315 4 C 0.172 3.828 5 C -0.217 4.217 6 C -0.167 4.167 7 C -0.217 4.217 8 C -0.095 4.095 9 N -0.204 5.204 10 O -0.031 6.031 11 C 0.080 3.920 12 C -0.473 4.473 13 H 0.136 0.864 14 C -0.192 4.192 15 N -0.423 5.423 16 Si 0.838 3.162 17 H -0.176 1.176 18 H -0.182 1.182 19 H -0.174 1.174 20 N -0.372 5.372 21 H 0.120 0.880 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.026 -8.941 0.211 9.441 hybrid contribution 0.262 0.833 0.145 0.885 sum -2.765 -8.108 0.356 8.574 Atomic orbital electron populations 1.21751 0.92810 1.03567 1.02155 1.22854 0.96310 0.82914 1.01492 1.88036 1.19473 1.28741 1.95222 1.19406 0.81927 0.84674 0.96778 1.22243 1.01311 1.01683 0.96478 1.21960 1.01183 1.00144 0.93396 1.21945 1.00368 1.01979 0.97393 1.25188 0.96704 0.98537 0.89055 1.74189 1.28212 0.92865 1.25154 1.85486 1.61084 1.19818 1.36757 1.24841 0.87844 0.95821 0.83487 1.19094 1.31517 0.88650 1.08051 0.86350 1.27366 0.91036 1.05883 0.94942 1.69689 1.21138 1.35482 1.16019 0.84624 0.80734 0.72486 0.78390 1.17621 1.18225 1.17356 1.72208 1.34198 0.99606 1.31183 0.87970 0.92963 0.93018 0.91615 0.91611 0.88001 0.91903 0.92807 0.91204 0.87927 0.91166 0.93819 0.92603 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 10.28 71.98 0.74 -2.60 16 2 C 0.04 1.07 5.86 71.98 0.42 1.49 16 3 O -0.40 -15.67 9.51 -148.98 -1.42 -17.09 16 4 C 0.21 8.60 0.79 -11.54 -0.01 8.60 16 5 C -0.16 -5.41 8.23 71.98 0.59 -4.82 16 6 C -0.13 -4.36 4.57 30.60 0.14 -4.22 16 7 C -0.16 -5.91 9.44 71.98 0.68 -5.23 16 8 C 0.18 9.52 6.36 138.61 0.88 10.40 16 9 N -0.47 -26.39 8.83 -56.60 -0.50 -26.89 16 10 O 0.01 0.63 9.74 64.23 0.63 1.25 16 11 C 0.27 16.21 7.82 85.06 0.66 16.87 16 12 C -0.44 -23.96 9.48 23.32 0.22 -23.73 16 13 H 0.12 6.13 7.85 -2.91 -0.02 6.11 16 14 C 0.03 1.44 5.50 85.43 0.47 1.91 16 15 N -0.80 -41.30 12.06 21.91 0.26 -41.04 16 16 Si 1.02 35.43 29.56 68.60 2.03 37.46 16 17 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 18 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 19 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 20 N -0.63 -36.73 11.61 -305.19 -3.54 -40.28 16 21 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.51 6.42 -2.39 -0.02 1.50 16 25 H 0.07 1.51 6.31 -2.39 -0.02 1.49 16 26 H 0.10 2.52 6.54 -2.39 -0.02 2.51 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.10 2.61 6.29 -2.39 -0.01 2.59 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.04 1.61 7.82 -2.39 -0.02 1.59 16 33 H 0.06 2.57 5.05 -2.39 -0.01 2.56 16 34 H 0.31 13.80 8.29 -92.71 -0.77 13.03 16 Total: -1.00 -70.08 282.54 3.36 -66.71 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.10 Total: 21.21 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.80 Total: -1.34 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.78 Total: -108.21 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.79 Total: -15.84 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -70.08 3.36 -66.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233751361.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.361 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds