Wall clock time and date at job start Mon Mar 30 2020 21:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99981 * 2 1 4 4 C 1.53002 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47116 * 180.02562 * 4 3 2 6 6 N 1.29954 * 126.28654 * 90.03068 * 5 4 3 7 7 O 1.21293 * 110.25286 * 180.02562 * 6 5 4 8 8 C 1.33642 * 109.81058 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55339 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47431 * 269.97717 * 9 8 7 11 11 H 1.09005 * 109.46510 * 305.00000 * 10 9 8 12 12 C 1.53000 * 109.47280 * 64.99429 * 10 9 8 13 13 C 1.50692 * 109.47480 * 184.99797 * 10 9 8 14 14 H 1.08008 * 120.00221 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00332 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00379 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99565 * 359.97438 * 15 13 10 18 18 H 1.48498 * 109.46867 * 90.00362 * 17 15 13 19 19 H 1.48501 * 109.47127 * 210.00079 * 17 15 13 20 20 H 1.48495 * 109.47468 * 330.00138 * 17 15 13 21 21 N 1.31130 * 106.90015 * 0.02562 * 8 7 6 22 22 H 1.08994 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46855 * 300.00252 * 1 2 3 24 24 H 1.09001 * 109.47305 * 59.99251 * 1 2 3 25 25 H 1.09007 * 109.46902 * 60.00790 * 3 2 1 26 26 H 1.08994 * 109.47601 * 300.00137 * 3 2 1 27 27 H 1.09003 * 109.47274 * 60.00602 * 4 3 2 28 28 H 1.08999 * 109.47622 * 300.00681 * 4 3 2 29 29 H 1.09000 * 109.46935 * 29.97313 * 9 8 7 30 30 H 1.08997 * 109.47416 * 149.97136 * 9 8 7 31 31 H 1.08999 * 109.47166 * 180.02562 * 12 10 9 32 32 H 1.08999 * 109.47100 * 300.00345 * 12 10 9 33 33 H 1.08994 * 109.46815 * 60.00339 * 12 10 9 34 34 H 0.97002 * 120.00185 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 7 4.4613 3.2634 1.0491 7 8 4.9350 4.3288 0.7146 8 6 4.9709 4.4098 -0.6189 9 6 5.4863 5.5676 -1.4342 10 6 4.3429 6.5459 -1.7105 11 1 3.5168 6.0149 -2.1835 12 6 3.8667 7.1593 -0.3922 13 6 4.8277 7.6394 -2.6271 14 1 5.8494 7.6371 -2.9773 15 6 3.9670 8.6428 -3.0187 16 7 4.3899 9.5968 -3.8191 17 14 2.1997 8.6464 -2.4137 18 1 2.1134 9.4087 -1.1422 19 1 1.3286 9.2842 -3.4333 20 1 1.7521 7.2492 -2.1844 21 7 4.4720 3.2892 -1.0824 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.6887 1.8464 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8575 0.6436 -0.8892 28 1 3.8568 0.6438 0.8908 29 1 6.2756 6.0779 -0.8821 30 1 5.8846 5.1980 -2.3791 31 1 3.0518 7.8559 -0.5890 32 1 3.5160 6.3684 0.2708 33 1 4.6927 7.6902 0.0808 34 1 3.7845 10.3030 -4.0943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234684242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:25 Heat of formation + Delta-G solvation = -10.250460 kcal Electronic energy + Delta-G solvation = -17000.412149 eV Core-core repulsion = 14128.913303 eV Total energy + Delta-G solvation = -2871.498846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.63186 -39.10478 -37.65969 -37.02752 -34.65431 -33.41304 -31.86370 -28.80901 -27.63898 -27.13597 -25.39364 -24.33136 -22.61786 -21.32691 -19.29095 -18.82386 -18.34302 -17.49761 -17.09018 -16.81045 -16.13348 -15.79171 -15.46915 -14.85341 -14.78423 -14.39623 -14.20420 -13.60654 -13.50952 -13.39296 -13.02975 -12.66417 -12.52996 -12.37445 -12.31895 -12.12109 -12.04647 -11.78030 -11.41687 -11.13250 -10.84540 -10.76951 -10.69666 -8.28915 -6.32707 0.08081 1.11149 1.30667 1.37047 1.45162 1.81867 2.32214 2.33416 2.89797 3.07386 3.15629 3.83256 3.91130 4.05288 4.16687 4.23837 4.33705 4.47281 4.48384 4.49845 4.60348 4.70824 4.80557 4.81028 4.82239 4.88572 4.94613 5.06820 5.28205 5.57830 5.63165 6.02521 6.27015 6.74563 7.10303 7.32910 8.86937 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.005696 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.371377 B = 4914.853547 C = 5535.058773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.073 3.927 4 C -0.020 4.020 5 C 0.168 3.832 6 N -0.402 5.402 7 O 0.069 5.931 8 C 0.212 3.788 9 C -0.009 4.009 10 C 0.016 3.984 11 H 0.023 0.977 12 C -0.150 4.150 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.022 3.978 16 N -0.942 5.942 17 Si 0.939 3.061 18 H -0.267 1.267 19 H -0.300 1.300 20 H -0.258 1.258 21 N -0.507 5.507 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -15.865 9.133 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.005 4.005 4 C -0.059 4.059 5 C -0.105 4.105 6 N -0.113 5.113 7 O 0.014 5.986 8 C -0.007 4.007 9 C -0.047 4.047 10 C -0.004 4.004 11 H 0.041 0.959 12 C -0.207 4.207 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.176 4.176 16 N -0.582 5.582 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.228 1.228 20 H -0.182 1.182 21 N -0.241 5.241 22 H 0.125 0.875 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.098 -16.454 9.557 19.699 hybrid contribution -0.892 0.963 -0.144 1.321 sum -5.990 -15.490 9.412 19.090 Atomic orbital electron populations 1.22985 0.78978 1.04355 1.00828 1.87782 1.21812 1.27042 1.95605 1.22263 0.92156 0.85209 1.00827 1.19767 0.93324 0.85892 1.06920 1.25989 1.00519 1.00503 0.83475 1.74574 1.17224 0.95040 1.24467 1.85288 1.58752 1.29269 1.25298 1.29376 0.93439 0.96232 0.81649 1.20420 0.99273 0.87431 0.97609 1.19084 0.94088 0.93455 0.93806 0.95883 1.22186 1.00886 0.99741 0.97905 1.21148 0.98631 1.07571 1.27734 0.92650 1.25671 1.02108 0.95018 0.94819 1.69999 1.37583 1.14212 1.36450 0.85994 0.80839 0.79049 0.77360 1.19265 1.22814 1.18240 1.71970 1.18361 1.04015 1.29769 0.87452 0.93225 0.93499 0.92923 0.93141 0.86915 0.86931 0.86472 0.87019 0.95125 0.93842 0.91111 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.66 10.70 -148.98 -1.59 -10.26 16 3 C 0.07 1.65 5.92 71.98 0.43 2.08 16 4 C -0.02 -0.47 6.21 29.85 0.19 -0.28 16 5 C 0.17 5.07 7.47 138.46 1.03 6.11 16 6 N -0.40 -12.88 12.16 -60.32 -0.73 -13.61 16 7 O 0.07 2.27 10.75 74.85 0.80 3.08 16 8 C 0.21 7.10 6.92 88.38 0.61 7.71 16 9 C -0.01 -0.29 5.26 29.85 0.16 -0.13 16 10 C 0.02 0.67 1.88 -11.54 -0.02 0.64 16 11 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 12 C -0.15 -5.88 8.49 71.98 0.61 -5.27 16 13 C -0.51 -26.73 9.14 25.60 0.23 -26.49 16 14 H 0.06 3.09 7.99 -2.91 -0.02 3.07 16 15 C 0.02 1.21 5.45 84.66 0.46 1.67 16 16 N -0.94 -56.28 13.96 21.45 0.30 -55.98 16 17 Si 0.94 43.68 24.37 68.60 1.67 45.35 16 18 H -0.27 -11.81 6.87 99.48 0.68 -11.13 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.26 -11.44 6.53 99.48 0.65 -10.79 16 21 N -0.51 -17.24 11.55 -303.19 -3.50 -20.74 16 22 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 25 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.03 1.27 3.28 -2.39 -0.01 1.26 16 32 H 0.04 1.53 6.93 -2.39 -0.02 1.51 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -62.36 286.87 2.90 -59.46 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.01 Total: 5.05 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.95 Total: -12.35 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.94 Total: -90.33 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.79 Total: -7.18 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.35 kcal Total: -62.36 2.90 -59.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234684242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.210 kcal (2) G-P(sol) polarization free energy of solvation -62.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds