Wall clock time and date at job start Mon Mar 30 2020 21:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 111.00082 * 2 1 4 4 C 1.53001 * 109.46775 * 64.72672 * 3 2 1 5 5 C 1.53005 * 109.47256 * 304.72886 * 3 2 1 6 6 C 1.50696 * 109.47261 * 184.72581 * 3 2 1 7 7 O 1.21281 * 119.99854 * 144.18080 * 6 3 2 8 8 N 1.34771 * 120.00132 * 324.18311 * 6 3 2 9 9 C 1.46502 * 120.00071 * 184.54553 * 8 6 3 10 10 C 1.53004 * 109.47120 * 185.09245 * 9 8 6 11 11 C 1.50706 * 115.54610 * 56.71200 * 10 9 8 12 12 H 1.07995 * 120.00371 * 271.85310 * 11 10 9 13 13 C 1.37884 * 119.99741 * 91.58614 * 11 10 9 14 14 N 1.31508 * 119.99803 * 173.15792 * 13 11 10 15 15 Si 1.86796 * 119.99900 * 353.15162 * 13 11 10 16 16 H 1.48500 * 109.47149 * 93.95914 * 15 13 11 17 17 H 1.48502 * 109.47109 * 213.95655 * 15 13 11 18 18 H 1.48501 * 109.47577 * 333.95923 * 15 13 11 19 19 C 1.52997 * 117.49796 * 202.38072 * 10 9 8 20 20 C 1.52998 * 117.49863 * 271.04277 * 10 9 8 21 21 H 1.08993 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46720 * 299.99629 * 1 2 3 23 23 H 1.08997 * 109.47140 * 59.99778 * 1 2 3 24 24 H 1.00896 * 111.00351 * 123.95777 * 2 1 3 25 25 H 1.09001 * 109.46981 * 182.40739 * 4 3 2 26 26 H 1.09002 * 109.47259 * 302.40239 * 4 3 2 27 27 H 1.08996 * 109.47347 * 62.40625 * 4 3 2 28 28 H 1.09000 * 109.46852 * 300.00237 * 5 3 2 29 29 H 1.09001 * 109.46838 * 59.99705 * 5 3 2 30 30 H 1.08995 * 109.47260 * 179.97438 * 5 3 2 31 31 H 0.97007 * 120.00127 * 4.54480 * 8 6 3 32 32 H 1.08997 * 109.47124 * 65.09705 * 9 8 6 33 33 H 1.08998 * 109.46715 * 305.09370 * 9 8 6 34 34 H 0.96995 * 119.99910 * 179.97438 * 14 13 11 35 35 H 1.09003 * 117.49977 * 215.00147 * 19 10 9 36 36 H 1.08994 * 117.49761 * 0.02774 * 19 10 9 37 37 H 1.08998 * 117.49988 * 359.97438 * 20 10 9 38 38 H 1.09007 * 117.49700 * 144.97447 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6033 2.0682 1.3045 5 6 1.4111 2.1422 -1.1856 6 6 3.4974 1.3330 -0.1171 7 8 4.0781 2.1867 -0.7534 8 7 4.1953 0.3499 0.4853 9 6 5.6600 0.3674 0.4558 10 6 6.1983 -0.9142 1.0950 11 6 5.7141 -2.2012 0.4781 12 1 4.7992 -2.6567 0.8272 13 6 6.4362 -2.7941 -0.5359 14 7 6.0899 -3.9817 -0.9821 15 14 7.9062 -1.9104 -1.2758 16 1 9.1461 -2.3493 -0.5865 17 1 8.0024 -2.2348 -2.7217 18 1 7.7388 -0.4445 -1.1074 19 6 7.6279 -0.8857 1.6392 20 6 6.4408 -0.9023 2.6056 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8307 -0.5261 0.7813 25 1 1.9570 3.0991 1.2863 26 1 0.5184 2.0583 1.4098 27 1 2.0549 1.5439 2.1465 28 1 1.6904 1.6457 -2.1148 29 1 0.3247 2.1699 -1.1008 30 1 1.8013 3.1598 -1.1853 31 1 3.7279 -0.3692 0.9384 32 1 6.0243 1.2313 1.0116 33 1 6.0017 0.4294 -0.5774 34 1 6.5977 -4.3987 -1.6956 35 1 8.2183 -1.7977 1.5511 36 1 8.1847 0.0463 1.5422 37 1 6.2174 0.0188 3.1439 38 1 6.2499 -1.8252 3.1533 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404094607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:01 Heat of formation + Delta-G solvation = -9.758538 kcal Electronic energy + Delta-G solvation = -18101.269168 eV Core-core repulsion = 15365.624747 eV Total energy + Delta-G solvation = -2735.644420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82561 -37.34295 -36.46828 -33.41505 -32.09710 -30.91299 -27.52330 -26.98041 -25.73627 -24.83759 -21.94094 -21.56085 -19.42943 -18.68990 -17.45201 -16.38109 -15.50550 -15.21321 -15.00816 -14.53091 -14.13389 -14.10120 -13.27098 -13.19676 -13.02296 -12.68825 -12.42060 -12.31090 -12.03388 -11.92246 -11.67032 -11.25791 -11.16929 -11.13966 -10.72636 -10.50027 -10.14795 -9.70653 -9.34364 -9.15173 -8.63392 -8.56322 -8.40370 -8.23226 -6.13781 -4.16989 3.08885 3.30225 3.41300 3.46879 3.73339 4.21020 4.42548 4.78767 4.92322 4.95906 5.12975 5.22481 5.32775 5.41676 5.58459 5.63695 5.70133 5.82922 5.88279 5.93895 6.03106 6.05300 6.06921 6.22986 6.34071 6.42065 6.52860 6.71254 6.90344 6.99464 7.08730 7.17263 7.31020 7.70098 8.21348 8.42421 8.79567 8.86503 9.50148 10.97558 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.007479 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.910490 B = 3743.036384 C = 3936.773076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.676 5.676 3 C 0.094 3.906 4 C -0.177 4.177 5 C -0.127 4.127 6 C 0.524 3.476 7 O -0.557 6.557 8 N -0.692 5.692 9 C 0.153 3.847 10 C -0.014 4.014 11 C -0.489 4.489 12 H 0.079 0.921 13 C 0.082 3.918 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.280 1.280 17 H -0.294 1.294 18 H -0.257 1.257 19 C -0.193 4.193 20 C -0.180 4.180 21 H 0.070 0.930 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.345 0.655 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.403 0.597 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.265 0.735 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 9.125 4.944 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.309 5.309 3 C -0.001 4.001 4 C -0.236 4.236 5 C -0.185 4.185 6 C 0.308 3.692 7 O -0.435 6.435 8 N -0.341 5.341 9 C 0.029 3.971 10 C -0.016 4.016 11 C -0.526 4.526 12 H 0.097 0.903 13 C -0.121 4.121 14 N -0.529 5.529 15 Si 0.706 3.294 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.181 1.181 19 C -0.231 4.231 20 C -0.218 4.218 21 H 0.089 0.911 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.165 0.835 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.238 0.762 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.223 9.495 3.682 13.089 hybrid contribution 0.506 0.144 0.669 0.851 sum -7.717 9.639 4.351 13.092 Atomic orbital electron populations 1.22305 0.87559 1.02160 1.00568 1.60566 1.08198 1.11793 1.50383 1.21159 0.92281 0.89880 0.96753 1.22466 1.02174 1.02058 0.96903 1.21704 0.99624 1.00124 0.97007 1.20189 0.88501 0.81735 0.78756 1.90645 1.71160 1.40047 1.41649 1.45800 1.07760 1.25613 1.54971 1.21154 0.78835 0.96170 1.00939 1.19619 0.94788 0.94961 0.92200 1.20119 1.10417 1.03303 1.18787 0.90336 1.24946 0.97162 0.94143 0.95893 1.69890 1.40708 1.14299 1.27982 0.86882 0.82965 0.81609 0.77991 1.20588 1.22040 1.18134 1.22916 0.92108 1.01304 1.06764 1.22885 1.03958 1.00904 0.94025 0.91134 0.95712 0.91178 0.83516 0.91341 0.91364 0.92014 0.91406 0.92172 0.91283 0.76170 0.94099 0.91571 0.92531 0.89121 0.90773 0.91021 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.89 60.07 0.59 0.84 16 2 N -0.68 -9.21 6.29 -108.36 -0.68 -9.89 16 3 C 0.09 1.33 0.91 -132.75 -0.12 1.21 16 4 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 5 C -0.13 -1.71 7.61 37.16 0.28 -1.42 16 6 C 0.52 9.79 6.70 -10.99 -0.07 9.72 16 7 O -0.56 -12.24 16.06 5.56 0.09 -12.15 16 8 N -0.69 -13.22 5.29 -60.30 -0.32 -13.54 16 9 C 0.15 3.25 5.35 -4.04 -0.02 3.23 16 10 C -0.01 -0.32 0.93 -155.66 -0.15 -0.46 16 11 C -0.49 -12.83 8.91 -34.43 -0.31 -13.14 16 12 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 13 C 0.08 2.29 5.46 -17.82 -0.10 2.19 16 14 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 15 Si 0.88 21.74 24.90 -169.99 -4.23 17.51 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.26 -6.18 5.64 56.52 0.32 -5.86 16 19 C -0.19 -3.99 7.61 -26.69 -0.20 -4.19 16 20 C -0.18 -3.45 9.93 -26.69 -0.27 -3.71 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.02 0.22 6.38 -51.93 -0.33 -0.11 16 23 H 0.07 0.71 6.23 -51.93 -0.32 0.39 16 24 H 0.35 4.54 7.28 -39.29 -0.29 4.26 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.65 6.40 -51.93 -0.33 0.32 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.64 6.34 -51.93 -0.33 0.31 16 30 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 31 H 0.40 7.18 6.56 -40.82 -0.27 6.91 16 32 H 0.04 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.07 1.59 6.53 -51.93 -0.34 1.25 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.97 7.12 -51.93 -0.37 1.60 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -30.75 300.23 -5.90 -36.65 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.01 Total: 10.10 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.05 Total: -7.46 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.23 Total: -49.17 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.23 Total: 17.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.75 -5.90 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404094607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.888 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds