Wall clock time and date at job start Mon Mar 30 2020 21:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47177 * 2 1 4 4 C 1.46852 * 111.00045 * 293.95599 * 3 2 1 5 5 C 1.53029 * 109.52356 * 174.15790 * 4 3 2 6 6 C 1.53120 * 109.27787 * 59.18492 * 5 4 3 7 7 C 1.53125 * 109.15723 * 302.33897 * 6 5 4 8 8 H 1.09000 * 109.50431 * 297.67571 * 7 6 5 9 9 C 1.52998 * 109.50194 * 177.59520 * 7 6 5 10 10 H 1.09005 * 109.46964 * 185.08130 * 9 7 6 11 11 C 1.53005 * 109.47360 * 305.08044 * 9 7 6 12 12 N 1.46896 * 109.47021 * 65.08414 * 9 7 6 13 13 C 1.46902 * 111.00284 * 154.99867 * 12 9 7 14 14 C 1.50696 * 109.47470 * 179.97438 * 13 12 9 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 C 1.46850 * 110.99605 * 169.70570 * 3 2 1 23 23 H 1.09005 * 109.46880 * 299.99860 * 1 2 3 24 24 H 1.09002 * 109.47511 * 60.00115 * 1 2 3 25 25 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46880 * 240.00140 * 2 1 3 27 27 H 1.08992 * 109.47457 * 120.00001 * 2 1 3 28 28 H 1.09009 * 109.46109 * 54.14196 * 4 3 2 29 29 H 1.09000 * 109.46445 * 294.17987 * 4 3 2 30 30 H 1.08998 * 109.51115 * 299.24150 * 5 4 3 31 31 H 1.09006 * 109.50428 * 179.12026 * 5 4 3 32 32 H 1.08999 * 109.52375 * 182.44105 * 6 5 4 33 33 H 1.08998 * 109.57915 * 62.27813 * 6 5 4 34 34 H 1.08995 * 109.46501 * 60.00029 * 11 9 7 35 35 H 1.08993 * 109.47081 * 179.97438 * 11 9 7 36 36 H 1.08997 * 109.46874 * 299.99981 * 11 9 7 37 37 H 1.00897 * 111.00300 * 31.04573 * 12 9 7 38 38 H 1.09001 * 109.47165 * 59.99566 * 13 12 9 39 39 H 1.09004 * 109.46739 * 300.00233 * 13 12 9 40 40 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 41 41 H 1.08997 * 109.42736 * 65.80983 * 22 3 2 42 42 H 1.08999 * 109.49722 * 305.83454 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 -1.2529 5 6 2.0655 3.5422 -1.1597 6 6 3.5713 3.6469 -0.9027 7 6 3.9158 2.8880 0.3819 8 1 3.4028 3.3493 1.2258 9 6 5.4273 2.9369 0.6142 10 1 5.6823 2.3220 1.4774 11 6 6.1512 2.4034 -0.6237 12 7 5.8399 4.3247 0.8627 13 6 7.0818 4.3726 1.6458 14 6 7.4732 5.8089 1.8797 15 1 6.8604 6.6065 1.4863 16 6 8.6130 6.1049 2.5968 17 7 9.3589 5.1337 3.0763 18 14 9.0977 7.8853 2.8873 19 1 8.0155 8.5777 3.6321 20 1 10.3532 7.9338 3.6789 21 1 9.3099 8.5600 1.5816 22 6 3.4668 1.4314 0.2450 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5962 1.9883 -1.4217 29 1 2.2029 1.5996 -2.0813 30 1 1.5228 4.0133 -0.3401 31 1 1.8203 4.0444 -2.0955 32 1 3.8500 4.6949 -0.7925 33 1 4.1160 3.2113 -1.7403 34 1 5.8962 3.0183 -1.4867 35 1 7.2279 2.4386 -0.4583 36 1 5.8450 1.3736 -0.8079 37 1 5.1048 4.8444 1.3183 38 1 7.8760 3.8644 1.0990 39 1 6.9262 3.8773 2.6043 40 1 9.1074 4.2091 2.9251 41 1 3.9910 0.9668 -0.5901 42 1 3.6977 0.8923 1.1638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037221663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:46 Heat of formation + Delta-G solvation = -19.456443 kcal Electronic energy + Delta-G solvation = -17944.441362 eV Core-core repulsion = 15344.209504 eV Total energy + Delta-G solvation = -2600.231858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52404 -36.58748 -34.04084 -32.76713 -31.02750 -29.99817 -28.14806 -25.78674 -24.69162 -23.35474 -22.20870 -21.53832 -20.25810 -18.73595 -16.90709 -16.10506 -15.42000 -14.83966 -14.70533 -14.51217 -14.05622 -13.69779 -13.59624 -13.42322 -13.00357 -12.39356 -12.21927 -12.07063 -11.88546 -11.79984 -11.74939 -11.27464 -11.14375 -11.04574 -10.71602 -10.65617 -10.52688 -10.22584 -10.12002 -10.04035 -9.78343 -8.57992 -8.38680 -8.35753 -7.35667 -6.34970 -4.03434 3.46326 3.48990 3.67422 3.78697 4.55329 4.73426 4.81155 4.94128 5.04574 5.08242 5.15360 5.29441 5.32735 5.40428 5.42279 5.52901 5.56925 5.62278 5.73918 5.77213 5.80324 5.85215 5.87420 6.00329 6.03151 6.15498 6.22482 6.25648 6.47050 6.51890 6.58286 6.80178 7.01244 7.05247 7.06033 7.20441 7.84941 8.20908 8.51864 8.61631 8.90330 9.68402 11.04871 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045771 B = 0.004405 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.596782 B = 6354.801599 C = 6542.216449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.081 4.081 8 H 0.073 0.927 9 C 0.086 3.914 10 H 0.032 0.968 11 C -0.138 4.138 12 N -0.675 5.675 13 C 0.185 3.815 14 C -0.594 4.594 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.073 2.927 19 H -0.288 1.288 20 H -0.283 1.283 21 H -0.287 1.287 22 C 0.062 3.938 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.331 0.669 38 H 0.018 0.982 39 H -0.026 1.026 40 H 0.266 0.734 41 H 0.036 0.964 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 -8.942 -8.102 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.073 4.073 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.100 4.100 8 H 0.092 0.908 9 C -0.025 4.025 10 H 0.049 0.951 11 C -0.196 4.196 12 N -0.306 5.306 13 C 0.057 3.943 14 C -0.633 4.633 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.901 3.099 19 H -0.215 1.215 20 H -0.209 1.209 21 H -0.214 1.214 22 C -0.066 4.066 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.036 0.964 39 H -0.008 1.008 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.832 -7.670 -7.611 18.350 hybrid contribution -1.025 -1.797 -0.479 2.124 sum -15.857 -9.467 -8.090 20.162 Atomic orbital electron populations 1.21803 0.95019 1.01288 1.02467 1.22048 0.95989 0.89174 1.00574 1.61915 1.14541 1.15101 1.34870 1.22133 1.00274 0.95084 0.89819 1.21628 0.97319 0.95051 1.01624 1.21615 0.94368 1.01687 0.97156 1.21309 0.95290 0.94505 0.98878 0.90841 1.21443 0.92335 0.91923 0.96790 0.95057 1.21865 1.00618 0.98701 0.98411 1.60611 1.07290 1.09328 1.53383 1.19684 0.87324 0.97722 0.89534 1.22013 1.12022 0.91834 1.37386 0.92631 1.25860 0.93283 1.06261 0.93595 1.70791 1.39592 1.00745 1.43993 0.83482 0.76167 0.73818 0.76389 1.21476 1.20865 1.21396 1.22162 0.86551 0.97386 1.00472 0.91837 0.92730 0.92518 0.95238 0.90922 0.90962 0.95285 0.91349 0.91845 0.90552 0.92007 0.92045 0.92865 0.93775 0.85216 0.96413 1.00848 0.92330 0.94557 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.85 37.16 0.37 -0.88 16 2 C 0.05 0.50 5.68 -3.82 -0.02 0.48 16 3 N -0.54 -6.41 4.65 -234.67 -1.09 -7.51 16 4 C 0.05 0.60 5.29 -3.84 -0.02 0.58 16 5 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 6 C -0.11 -1.52 4.73 -26.60 -0.13 -1.64 16 7 C -0.08 -1.18 2.05 -90.53 -0.19 -1.37 16 8 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 9 C 0.09 1.53 2.39 -67.71 -0.16 1.37 16 10 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 11 C -0.14 -2.30 8.68 37.16 0.32 -1.98 16 12 N -0.68 -14.59 5.81 -107.99 -0.63 -15.22 16 13 C 0.18 4.89 4.55 -4.98 -0.02 4.87 16 14 C -0.59 -17.28 9.32 -34.44 -0.32 -17.61 16 15 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 16 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 17 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 18 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.06 0.81 4.52 -3.83 -0.02 0.79 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.44 6.44 -51.93 -0.33 0.11 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.07 0.71 7.98 -51.93 -0.41 0.29 16 28 H 0.07 0.71 6.22 -51.92 -0.32 0.38 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 33 H 0.06 0.85 6.21 -51.93 -0.32 0.53 16 34 H 0.06 1.01 6.29 -51.93 -0.33 0.68 16 35 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 36 H 0.04 0.63 6.55 -51.93 -0.34 0.29 16 37 H 0.33 6.98 8.27 -39.29 -0.33 6.65 16 38 H 0.02 0.50 7.30 -51.93 -0.38 0.12 16 39 H -0.03 -0.73 7.92 -51.93 -0.41 -1.14 16 40 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 41 H 0.04 0.47 6.52 -51.93 -0.34 0.13 16 42 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -30.54 316.65 -9.30 -39.84 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.58 Total: 1.79 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.45 Total: -16.62 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.96 Total: -50.43 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.54 -9.30 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.388 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds