Wall clock time and date at job start Mon Mar 30 2020 21:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47177 * 2 1 4 4 C 1.46852 * 111.00045 * 293.95599 * 3 2 1 5 5 C 1.53029 * 109.52356 * 174.15790 * 4 3 2 6 6 C 1.53120 * 109.27787 * 59.18492 * 5 4 3 7 7 C 1.53125 * 109.15723 * 302.33897 * 6 5 4 8 8 H 1.09000 * 109.50431 * 297.67571 * 7 6 5 9 9 C 1.52998 * 109.50194 * 177.59520 * 7 6 5 10 10 H 1.09005 * 109.46964 * 185.08130 * 9 7 6 11 11 C 1.53005 * 109.47360 * 305.08044 * 9 7 6 12 12 N 1.46896 * 109.47021 * 65.08414 * 9 7 6 13 13 C 1.46902 * 111.00284 * 154.99867 * 12 9 7 14 14 C 1.50696 * 109.47470 * 179.97438 * 13 12 9 15 15 H 1.08003 * 120.00087 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99956 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 60.00735 * 18 16 14 20 20 H 1.48503 * 109.47399 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47295 * 300.00832 * 18 16 14 22 22 C 1.46850 * 110.99605 * 169.70570 * 3 2 1 23 23 H 1.09005 * 109.46880 * 299.99860 * 1 2 3 24 24 H 1.09002 * 109.47511 * 60.00115 * 1 2 3 25 25 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46880 * 240.00140 * 2 1 3 27 27 H 1.08992 * 109.47457 * 120.00001 * 2 1 3 28 28 H 1.09009 * 109.46109 * 54.14196 * 4 3 2 29 29 H 1.09000 * 109.46445 * 294.17987 * 4 3 2 30 30 H 1.08998 * 109.51115 * 299.24150 * 5 4 3 31 31 H 1.09006 * 109.50428 * 179.12026 * 5 4 3 32 32 H 1.08999 * 109.52375 * 182.44105 * 6 5 4 33 33 H 1.08998 * 109.57915 * 62.27813 * 6 5 4 34 34 H 1.08995 * 109.46501 * 60.00029 * 11 9 7 35 35 H 1.08993 * 109.47081 * 179.97438 * 11 9 7 36 36 H 1.08997 * 109.46874 * 299.99981 * 11 9 7 37 37 H 1.00897 * 111.00300 * 31.04573 * 12 9 7 38 38 H 1.09001 * 109.47165 * 59.99566 * 13 12 9 39 39 H 1.09004 * 109.46739 * 300.00233 * 13 12 9 40 40 H 0.97000 * 119.99806 * 0.02562 * 17 16 14 41 41 H 1.08997 * 109.42736 * 65.80983 * 22 3 2 42 42 H 1.08999 * 109.49722 * 305.83454 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 -1.2529 5 6 2.0655 3.5422 -1.1597 6 6 3.5713 3.6469 -0.9027 7 6 3.9158 2.8880 0.3819 8 1 3.4028 3.3493 1.2258 9 6 5.4273 2.9369 0.6142 10 1 5.6823 2.3220 1.4774 11 6 6.1512 2.4034 -0.6237 12 7 5.8399 4.3247 0.8627 13 6 7.0818 4.3726 1.6458 14 6 7.4732 5.8089 1.8797 15 1 6.8604 6.6065 1.4863 16 6 8.6130 6.1049 2.5968 17 7 9.3589 5.1337 3.0763 18 14 9.0977 7.8853 2.8873 19 1 8.0155 8.5777 3.6321 20 1 10.3532 7.9338 3.6789 21 1 9.3099 8.5600 1.5816 22 6 3.4668 1.4314 0.2450 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5962 1.9883 -1.4217 29 1 2.2029 1.5996 -2.0813 30 1 1.5228 4.0133 -0.3401 31 1 1.8203 4.0444 -2.0955 32 1 3.8500 4.6949 -0.7925 33 1 4.1160 3.2113 -1.7403 34 1 5.8962 3.0183 -1.4867 35 1 7.2279 2.4386 -0.4583 36 1 5.8450 1.3736 -0.8079 37 1 5.1048 4.8444 1.3183 38 1 7.8760 3.8644 1.0990 39 1 6.9262 3.8773 2.6043 40 1 9.1074 4.2091 2.9251 41 1 3.9910 0.9668 -0.5901 42 1 3.6977 0.8923 1.1638 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037221663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:46 Heat of formation + Delta-G solvation = -39.990447 kcal Electronic energy + Delta-G solvation = -17945.331784 eV Core-core repulsion = 15344.209504 eV Total energy + Delta-G solvation = -2601.122280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62663 -38.00227 -35.70918 -34.31346 -32.45769 -31.00917 -29.42968 -27.79367 -25.70502 -24.91125 -23.56094 -22.93502 -21.33738 -20.03588 -19.00972 -17.20139 -16.58662 -16.09784 -16.00004 -15.92660 -15.56481 -15.27770 -14.95855 -14.54652 -14.21237 -13.88339 -13.82367 -13.32701 -13.18917 -12.92474 -12.84364 -12.78226 -12.55183 -12.37461 -12.25541 -11.94333 -11.89951 -11.78020 -11.38520 -11.21975 -11.09266 -10.71618 -10.62062 -9.28111 -9.21504 -8.72138 -6.42825 1.53276 1.62317 1.81948 2.55550 2.86160 3.12649 3.41394 3.78318 3.81253 3.92871 4.12507 4.17036 4.28427 4.35866 4.45182 4.49435 4.51653 4.58729 4.62434 4.66578 4.76444 4.80253 4.87228 4.89047 4.97785 5.00828 5.03417 5.08919 5.13060 5.19547 5.30356 5.34128 5.42744 5.53947 5.75280 6.01068 6.12471 6.19296 6.38766 6.55594 6.69068 7.39854 8.67505 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.045771 B = 0.004405 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.596782 B = 6354.801599 C = 6542.216449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.550 5.550 4 C 0.055 3.945 5 C -0.113 4.113 6 C -0.107 4.107 7 C -0.070 4.070 8 H 0.062 0.938 9 C 0.084 3.916 10 H 0.015 0.985 11 C -0.131 4.131 12 N -0.671 5.671 13 C 0.197 3.803 14 C -0.611 4.611 15 H 0.057 0.943 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.125 2.875 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.069 3.931 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.333 0.667 38 H -0.004 1.004 39 H -0.050 1.050 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 -8.716 -9.193 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.275 5.275 4 C -0.072 4.072 5 C -0.151 4.151 6 C -0.145 4.145 7 C -0.089 4.089 8 H 0.080 0.920 9 C -0.026 4.026 10 H 0.033 0.967 11 C -0.189 4.189 12 N -0.302 5.302 13 C 0.069 3.931 14 C -0.649 4.649 15 H 0.075 0.925 16 C -0.236 4.236 17 N -0.574 5.574 18 Si 0.945 3.055 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.059 4.059 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.014 0.986 39 H -0.032 1.032 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.508 -7.471 -8.722 20.110 hybrid contribution -0.560 -1.938 -0.158 2.024 sum -17.068 -9.409 -8.881 21.418 Atomic orbital electron populations 1.21767 0.93694 1.02310 1.02280 1.22128 0.97035 0.87999 1.00818 1.61914 1.13367 1.16550 1.35666 1.22172 1.01353 0.94283 0.89409 1.21589 0.95225 0.95927 1.02311 1.21562 0.96278 1.00252 0.96367 1.21162 0.92404 0.96226 0.99147 0.91991 1.21556 0.94993 0.89329 0.96731 0.96658 1.21811 0.98722 1.00546 0.97788 1.60528 1.05867 1.11991 1.51796 1.19364 0.88911 0.96210 0.88592 1.22387 1.12271 0.92896 1.37316 0.92506 1.27517 0.93283 1.09950 0.92800 1.70928 1.40498 1.00512 1.45501 0.82847 0.76395 0.68924 0.77355 1.19224 1.20861 1.19461 1.22014 0.87775 0.95613 1.00541 0.92614 0.92252 0.90957 0.94669 0.91016 0.89273 0.94954 0.91908 0.90066 0.92348 0.91829 0.91520 0.95457 0.90877 0.84913 0.98648 1.03246 0.93860 0.94146 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.85 71.98 0.71 -1.33 16 2 C 0.05 0.84 5.68 86.30 0.49 1.33 16 3 N -0.55 -11.96 4.65 -896.35 -4.17 -16.13 16 4 C 0.06 1.06 5.29 86.32 0.46 1.52 16 5 C -0.11 -2.36 6.09 30.64 0.19 -2.17 16 6 C -0.11 -2.80 4.73 30.68 0.15 -2.65 16 7 C -0.07 -2.02 2.05 -10.74 -0.02 -2.04 16 8 H 0.06 1.94 8.02 -2.39 -0.02 1.92 16 9 C 0.08 3.04 2.39 44.92 0.11 3.15 16 10 H 0.02 0.61 7.80 -2.38 -0.02 0.59 16 11 C -0.13 -4.34 8.68 71.98 0.63 -3.71 16 12 N -0.67 -29.66 5.81 -495.57 -2.88 -32.54 16 13 C 0.20 10.86 4.55 85.56 0.39 11.25 16 14 C -0.61 -36.05 9.32 25.60 0.24 -35.81 16 15 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 16 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 17 N -0.94 -59.48 13.65 21.45 0.29 -59.19 16 18 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C 0.07 1.70 4.52 86.33 0.39 2.09 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.06 0.79 6.44 -2.39 -0.02 0.77 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.04 0.59 8.12 -2.38 -0.02 0.57 16 27 H 0.07 1.27 7.98 -2.39 -0.02 1.25 16 28 H 0.09 1.44 6.22 -2.38 -0.01 1.43 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 1.73 7.83 -2.39 -0.02 1.72 16 33 H 0.06 1.64 6.21 -2.39 -0.01 1.63 16 34 H 0.07 2.13 6.29 -2.39 -0.02 2.11 16 35 H 0.03 1.02 7.45 -2.39 -0.02 1.00 16 36 H 0.07 1.98 6.55 -2.39 -0.02 1.96 16 37 H 0.33 14.33 8.27 -89.70 -0.74 13.59 16 38 H 0.00 -0.26 7.30 -2.39 -0.02 -0.28 16 39 H -0.05 -2.94 7.92 -2.39 -0.02 -2.95 16 40 H 0.25 16.30 7.22 -92.71 -0.67 15.63 16 41 H 0.04 0.96 6.52 -2.39 -0.02 0.95 16 42 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 Total: -1.00 -66.09 316.65 -0.20 -66.28 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.33 Total: 18.52 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 4.18 Total: -30.20 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.76 Total: -107.86 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -66.09 -0.20 -66.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037221663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.294 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds