Wall clock time and date at job start Mon Mar 30 2020 21:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.07991 * 120.00525 * 245.37937 * 4 2 1 6 6 C 1.37880 * 119.99441 * 65.37724 * 4 2 1 7 7 N 1.31513 * 119.99742 * 185.16643 * 6 4 2 8 8 Si 1.86794 * 120.00168 * 5.16482 * 6 4 2 9 9 H 1.48496 * 109.47385 * 270.00050 * 8 6 4 10 10 H 1.48500 * 109.47377 * 30.00115 * 8 6 4 11 11 H 1.48503 * 109.46985 * 150.00184 * 8 6 4 12 12 N 1.46900 * 109.47254 * 120.00520 * 2 1 3 13 13 C 1.46906 * 110.99762 * 274.99622 * 12 2 1 14 14 H 1.08997 * 109.47021 * 35.00299 * 13 12 2 15 15 C 1.52998 * 109.47091 * 274.99979 * 13 12 2 16 16 C 1.53000 * 109.47323 * 299.99736 * 15 13 12 17 17 C 1.52997 * 109.47386 * 300.00366 * 16 15 13 18 18 C 1.53008 * 109.47202 * 59.99554 * 17 16 15 19 19 H 1.08997 * 109.46510 * 60.00283 * 18 17 16 20 20 N 1.46900 * 109.46963 * 179.97438 * 18 17 16 21 21 C 1.46899 * 111.00451 * 295.00018 * 20 18 17 22 22 C 1.46897 * 110.99681 * 58.95904 * 20 18 17 23 23 C 1.52997 * 109.46958 * 300.00501 * 18 17 16 24 24 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 25 25 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 26 26 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 27 27 H 0.96998 * 120.00440 * 354.99448 * 7 6 4 28 28 H 1.00900 * 111.00306 * 151.04811 * 12 2 1 29 29 H 1.08998 * 109.47398 * 59.99750 * 15 13 12 30 30 H 1.09000 * 109.47012 * 179.97438 * 15 13 12 31 31 H 1.08997 * 109.47262 * 179.97438 * 16 15 13 32 32 H 1.09010 * 109.47033 * 60.00273 * 16 15 13 33 33 H 1.09000 * 109.46892 * 299.99786 * 17 16 15 34 34 H 1.09002 * 109.47631 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46721 * 59.99928 * 21 20 18 36 36 H 1.08997 * 109.47024 * 180.02562 * 21 20 18 37 37 H 1.08998 * 109.46958 * 300.00236 * 21 20 18 38 38 H 1.09007 * 109.47567 * 59.99635 * 22 20 18 39 39 H 1.09006 * 109.46955 * 179.97438 * 22 20 18 40 40 H 1.09004 * 109.47532 * 299.99403 * 22 20 18 41 41 H 1.09000 * 109.47099 * 299.99745 * 23 18 17 42 42 H 1.09007 * 109.46894 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6363 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3181 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2908 15 6 3.4112 0.9807 2.3223 16 6 4.5690 -0.0164 2.4012 17 6 4.4636 -0.8187 3.6996 18 6 3.1348 -1.5770 3.7242 19 1 3.0883 -2.2559 2.8728 20 7 3.0340 -2.3478 4.9706 21 6 4.0608 -3.3969 5.0255 22 6 3.1184 -1.4665 6.1428 23 6 1.9771 -0.5799 3.6453 24 1 -0.3633 0.5898 -0.8416 25 1 -0.3634 -1.0237 -0.0899 26 1 -0.3633 0.4339 0.9316 27 1 2.6310 -1.6802 -3.4737 28 1 2.9173 -1.1206 1.0287 29 1 3.4863 1.5523 1.3973 30 1 3.4576 1.6600 3.1735 31 1 5.5155 0.5238 2.3833 32 1 4.5224 -0.6954 1.5497 33 1 4.5102 -0.1397 4.5511 34 1 5.2882 -1.5294 3.7557 35 1 5.0494 -2.9405 4.9759 36 1 3.9631 -3.9525 5.9582 37 1 3.9315 -4.0762 4.1830 38 1 2.3041 -0.7426 6.1127 39 1 3.0406 -2.0628 7.0520 40 1 4.0730 -0.9402 6.1338 41 1 2.0237 0.0991 4.4967 42 1 1.0305 -1.1201 3.6633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380230528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:02:07 Heat of formation + Delta-G solvation = -26.446027 kcal Electronic energy + Delta-G solvation = -18644.939937 eV Core-core repulsion = 16044.404988 eV Total energy + Delta-G solvation = -2600.534949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86199 -38.05100 -35.90747 -33.98184 -31.80431 -30.61714 -28.95767 -28.28933 -26.69124 -25.18302 -23.39254 -22.15221 -21.46472 -19.74460 -19.40351 -17.37435 -16.50039 -16.21878 -16.07224 -15.59784 -15.42170 -15.21749 -14.77530 -14.42225 -14.30794 -13.87179 -13.58564 -13.35094 -13.13481 -13.04477 -12.75015 -12.64450 -12.40025 -12.37721 -12.25341 -11.92431 -11.85735 -11.61712 -11.43721 -11.34454 -10.95493 -10.78065 -10.64225 -9.14204 -9.04247 -8.70435 -6.39512 1.41556 1.50740 1.67770 2.45817 3.06812 3.09334 3.53093 3.77051 3.84887 4.03479 4.19116 4.28661 4.37110 4.45409 4.51279 4.55457 4.58172 4.63603 4.71192 4.71842 4.78605 4.82008 4.85691 4.98552 5.00689 5.03056 5.06298 5.13721 5.15227 5.20075 5.29204 5.45229 5.49835 5.64052 5.80714 6.00727 6.17183 6.22111 6.33914 6.72990 6.84711 7.40674 8.65476 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.006137 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.746789 B = 4561.323484 C = 4647.501141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.184 3.816 3 H 0.000 1.000 4 C -0.592 4.592 5 H 0.020 0.980 6 C -0.025 4.025 7 N -0.947 5.947 8 Si 1.094 2.906 9 H -0.264 1.264 10 H -0.254 1.254 11 H -0.293 1.293 12 N -0.678 5.678 13 C 0.082 3.918 14 H 0.071 0.929 15 C -0.144 4.144 16 C -0.113 4.113 17 C -0.138 4.138 18 C 0.091 3.909 19 H 0.061 0.939 20 N -0.554 5.554 21 C 0.022 3.978 22 C 0.017 3.983 23 C -0.084 4.084 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.251 0.749 28 H 0.331 0.669 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 3.148 19.890 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.630 4.630 5 H 0.039 0.961 6 C -0.222 4.222 7 N -0.584 5.584 8 Si 0.917 3.083 9 H -0.189 1.189 10 H -0.179 1.179 11 H -0.220 1.220 12 N -0.310 5.310 13 C -0.029 4.029 14 H 0.089 0.911 15 C -0.183 4.183 16 C -0.152 4.152 17 C -0.177 4.177 18 C -0.018 4.018 19 H 0.079 0.921 20 N -0.277 5.277 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.151 0.849 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.524 3.704 18.996 19.414 hybrid contribution 2.386 -0.845 0.087 2.533 sum 3.910 2.860 19.083 19.689 Atomic orbital electron populations 1.21931 0.97421 1.00325 0.99232 1.19420 0.92686 0.92398 0.88071 0.98284 1.22407 1.38335 1.08716 0.93552 0.96127 1.27151 0.96789 1.06433 0.91790 1.70933 1.39009 1.16972 1.31496 0.83387 0.76703 0.71943 0.76282 1.18941 1.17851 1.21976 1.60693 1.32658 1.32776 1.04841 1.21674 0.96315 0.93429 0.91478 0.91053 1.22130 0.95883 0.98536 1.01719 1.21399 0.98474 0.97871 0.97415 1.22106 0.98315 0.99361 0.97950 1.21564 0.94006 0.94345 0.91847 0.92072 1.62225 1.48774 1.14180 1.02503 1.22413 0.92819 0.94617 1.02795 1.22512 1.00868 0.96980 0.92700 1.21459 0.98061 0.96979 0.95697 0.94415 0.94221 0.92640 0.94032 0.84896 0.93917 0.89776 0.91102 0.94086 0.90415 0.91900 0.94955 0.90225 0.92465 0.90936 0.90685 0.94769 0.90253 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 9.01 71.98 0.65 -5.06 16 2 C 0.18 8.67 1.99 44.17 0.09 8.75 16 3 H 0.00 -0.02 5.62 -2.39 -0.01 -0.03 16 4 C -0.59 -34.01 8.92 25.60 0.23 -33.78 16 5 H 0.02 1.30 7.90 -2.92 -0.02 1.28 16 6 C -0.02 -1.45 5.43 84.66 0.46 -0.99 16 7 N -0.95 -60.47 13.70 21.45 0.29 -60.18 16 8 Si 1.09 51.30 25.29 68.60 1.73 53.03 16 9 H -0.26 -11.51 6.81 99.48 0.68 -10.83 16 10 H -0.25 -10.71 6.36 99.48 0.63 -10.07 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 N -0.68 -27.56 5.57 -473.31 -2.63 -30.20 16 13 C 0.08 2.60 2.65 44.91 0.12 2.72 16 14 H 0.07 2.29 7.10 -2.39 -0.02 2.27 16 15 C -0.14 -4.13 5.50 30.59 0.17 -3.96 16 16 C -0.11 -3.10 5.67 30.59 0.17 -2.92 16 17 C -0.14 -3.23 4.51 30.60 0.14 -3.09 16 18 C 0.09 2.40 1.99 44.92 0.09 2.49 16 19 H 0.06 2.00 7.20 -2.39 -0.02 1.98 16 20 N -0.55 -12.90 5.01 -923.27 -4.62 -17.52 16 21 C 0.02 0.44 9.31 127.69 1.19 1.63 16 22 C 0.02 0.31 8.82 127.69 1.13 1.43 16 23 C -0.08 -2.26 4.71 30.59 0.14 -2.11 16 24 H 0.04 1.62 4.40 -2.39 -0.01 1.61 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 2.05 7.38 -2.39 -0.02 2.03 16 27 H 0.25 16.27 8.72 -92.71 -0.81 15.46 16 28 H 0.33 14.12 5.09 -89.69 -0.46 13.66 16 29 H 0.04 1.41 7.43 -2.39 -0.02 1.40 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.35 6.26 -2.38 -0.01 1.34 16 33 H 0.08 1.58 6.39 -2.39 -0.02 1.56 16 34 H 0.06 1.42 6.52 -2.39 -0.02 1.40 16 35 H 0.03 0.61 6.44 -2.39 -0.02 0.60 16 36 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.27 6.33 -2.38 -0.02 1.26 16 39 H 0.07 1.15 8.12 -2.38 -0.02 1.13 16 40 H 0.03 0.57 6.28 -2.39 -0.01 0.55 16 41 H 0.08 1.76 6.43 -2.39 -0.02 1.75 16 42 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -64.39 300.75 -0.26 -64.65 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.39 Total: 25.10 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.57 Total: -34.89 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -6.96 Total: -107.89 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 1.73 Total: 53.03 kcal Total: -64.39 -0.26 -64.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.203 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds