Wall clock time and date at job start Mon Mar 30 2020 21:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50703 * 109.46851 * 240.00195 * 2 1 3 5 5 H 1.07998 * 120.00162 * 245.20812 * 4 2 1 6 6 C 1.37879 * 119.99811 * 65.21607 * 4 2 1 7 7 N 1.31519 * 119.99567 * 196.60063 * 6 4 2 8 8 Si 1.86797 * 120.00357 * 16.60333 * 6 4 2 9 9 H 1.48498 * 109.47195 * 95.69510 * 8 6 4 10 10 H 1.48503 * 109.47145 * 215.69993 * 8 6 4 11 11 H 1.48507 * 109.46864 * 335.69499 * 8 6 4 12 12 N 1.46900 * 109.46785 * 120.00335 * 2 1 3 13 13 C 1.46900 * 111.00103 * 273.55081 * 12 2 1 14 14 H 1.08999 * 109.47033 * 34.28985 * 13 12 2 15 15 C 1.53000 * 109.47064 * 154.29015 * 13 12 2 16 16 C 1.52997 * 109.46962 * 60.00001 * 15 13 12 17 17 C 1.53007 * 109.46859 * 59.99927 * 16 15 13 18 18 C 1.52993 * 109.47128 * 299.99778 * 17 16 15 19 19 H 1.09007 * 109.47116 * 299.99835 * 18 17 16 20 20 N 1.46904 * 109.47088 * 180.02562 * 18 17 16 21 21 C 1.46905 * 111.00046 * 59.99956 * 20 18 17 22 22 C 1.46894 * 110.99974 * 183.95202 * 20 18 17 23 23 C 1.52994 * 109.47012 * 274.29445 * 13 12 2 24 24 H 1.08996 * 109.47315 * 302.71326 * 1 2 3 25 25 H 1.09001 * 109.46797 * 62.70866 * 1 2 3 26 26 H 1.09000 * 109.46918 * 182.70662 * 1 2 3 27 27 H 0.96998 * 119.99289 * 179.97438 * 7 6 4 28 28 H 1.00900 * 110.99680 * 149.59664 * 12 2 1 29 29 H 1.08997 * 109.47294 * 300.00095 * 15 13 12 30 30 H 1.09001 * 109.47165 * 179.97438 * 15 13 12 31 31 H 1.08993 * 109.47444 * 299.99863 * 16 15 13 32 32 H 1.08998 * 109.47258 * 179.97438 * 16 15 13 33 33 H 1.09009 * 109.46734 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47209 * 60.00081 * 17 16 15 35 35 H 1.08994 * 109.47270 * 183.95114 * 21 20 18 36 36 H 1.09003 * 109.46910 * 303.95769 * 21 20 18 37 37 H 1.09007 * 109.46866 * 63.95234 * 21 20 18 38 38 H 1.08997 * 109.47580 * 299.99871 * 22 20 18 39 39 H 1.09001 * 109.47431 * 60.00094 * 22 20 18 40 40 H 1.09003 * 109.47320 * 180.02562 * 22 20 18 41 41 H 1.09001 * 109.46997 * 180.02562 * 23 13 12 42 42 H 1.08998 * 109.47603 * 60.00049 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5821 -1.6349 -1.1338 6 6 1.7902 -0.1799 -2.4799 7 7 1.9269 -0.9309 -3.5509 8 14 1.2680 1.6054 -2.6514 9 1 2.4602 2.4451 -2.9319 10 1 0.2988 1.7325 -3.7694 11 1 0.6297 2.0579 -1.3892 12 7 2.0197 -0.6926 1.1994 13 6 2.1150 0.2304 2.3382 14 1 1.3119 0.9649 2.2789 15 6 1.9909 -0.5566 3.6444 16 6 3.1182 -1.5876 3.7277 17 6 4.4692 -0.8701 3.6909 18 6 4.5933 -0.0831 2.3848 19 1 4.5225 -0.7680 1.5398 20 7 5.8906 0.6053 2.3493 21 6 6.9988 -0.3558 2.4272 22 6 6.0071 1.4471 1.1512 23 6 3.4658 0.9478 2.3015 24 1 -0.3634 0.5554 0.8646 25 1 -0.3633 0.4712 -0.9133 26 1 -0.3633 -1.0265 0.0485 27 1 1.7561 -0.5577 -4.4298 28 1 2.9062 -1.1405 1.0217 29 1 1.0285 -1.0677 3.6706 30 1 2.0621 0.1282 4.4894 31 1 3.0475 -2.2725 2.8827 32 1 3.0301 -2.1480 4.6584 33 1 5.2724 -1.6047 3.7507 34 1 4.5399 -0.1853 4.5360 35 1 7.9451 0.1834 2.4697 36 1 6.8879 -0.9664 3.3234 37 1 6.9857 -0.9978 1.5463 38 1 5.9168 0.8258 0.2602 39 1 5.2145 2.1953 1.1542 40 1 6.9769 1.9448 1.1497 41 1 3.5368 1.6324 3.1467 42 1 3.5543 1.5086 1.3710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380230537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:02:11 Heat of formation + Delta-G solvation = -2.108469 kcal Electronic energy + Delta-G solvation = -18833.877686 eV Core-core repulsion = 16234.398092 eV Total energy + Delta-G solvation = -2599.479594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.50614 -36.41141 -34.46538 -32.17834 -30.34341 -29.44117 -27.85905 -26.79069 -25.00876 -23.89667 -21.90521 -20.64877 -20.22138 -18.31108 -16.90754 -16.12674 -15.08268 -14.94461 -14.63691 -14.15753 -13.98437 -13.59194 -13.50971 -12.81735 -12.75959 -12.36002 -12.23151 -12.03771 -11.98761 -11.67214 -11.26897 -11.21779 -11.18208 -10.90986 -10.76020 -10.53253 -10.29944 -10.22387 -9.99242 -9.61514 -9.49812 -9.12389 -8.44607 -8.17105 -7.38109 -6.14073 -4.07748 3.24762 3.35013 3.38296 4.06365 4.39405 4.88575 5.03326 5.12819 5.19438 5.29082 5.39830 5.46319 5.55655 5.57763 5.67758 5.75989 5.79427 5.83421 5.84311 5.97240 6.00258 6.11760 6.12854 6.26964 6.35439 6.45032 6.48921 6.52155 6.63655 6.67522 6.76250 6.88251 6.98060 7.19647 7.24324 7.46465 7.68283 8.00961 8.40395 8.65466 8.95780 9.53143 10.99072 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.008374 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.234753 B = 3342.832545 C = 3950.437870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.186 3.814 3 H -0.004 1.004 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.864 3.136 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.256 1.256 12 N -0.674 5.674 13 C 0.085 3.915 14 H 0.071 0.929 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.109 4.109 18 C 0.084 3.916 19 H 0.049 0.951 20 N -0.543 5.543 21 C 0.020 3.980 22 C 0.019 3.981 23 C -0.141 4.141 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.263 0.737 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 2.972 13.388 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.014 0.986 4 C -0.563 4.563 5 H 0.092 0.908 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.691 3.309 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.180 1.180 12 N -0.306 5.306 13 C -0.026 4.026 14 H 0.089 0.911 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.025 4.025 19 H 0.067 0.933 20 N -0.267 5.267 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.180 4.180 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.875 3.026 13.750 14.899 hybrid contribution 0.534 1.002 -1.389 1.794 sum 5.409 4.028 12.362 14.082 Atomic orbital electron populations 1.22017 0.98403 1.00399 0.97837 1.19451 0.92014 0.92504 0.88328 0.98605 1.21045 1.36611 1.09683 0.88930 0.90816 1.24881 0.94522 0.97362 0.95772 1.70001 1.49001 1.35259 0.98448 0.87132 0.78666 0.86695 0.78379 1.20880 1.21258 1.17966 1.60692 1.33765 1.30688 1.05465 1.21557 0.94808 0.93809 0.92441 0.91122 1.21508 0.98754 0.97597 0.96294 1.21467 0.93955 0.98294 1.01735 1.21613 0.97366 0.98525 0.97182 1.21653 0.88345 0.94949 0.97508 0.93350 1.62090 1.02395 1.22853 1.39347 1.22428 0.94153 0.95357 1.00883 1.22431 1.02011 0.97631 0.90843 1.22276 0.95379 0.98210 1.02152 0.96263 0.94114 0.92911 0.92711 0.84204 0.91613 0.92796 0.90993 0.92564 0.92400 0.91687 0.91863 0.91208 0.95593 0.94995 0.91035 0.91943 0.91642 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.76 37.16 0.33 -2.57 16 2 C 0.19 4.36 1.95 -68.86 -0.13 4.23 16 3 H 0.00 -0.09 5.66 -51.93 -0.29 -0.38 16 4 C -0.52 -14.53 8.98 -34.44 -0.31 -14.84 16 5 H 0.07 2.22 7.89 -52.49 -0.41 1.81 16 6 C 0.08 2.21 5.33 -17.82 -0.09 2.11 16 7 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 8 Si 0.86 21.26 25.82 -169.99 -4.39 16.87 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -5.99 5.58 56.52 0.32 -5.67 16 12 N -0.67 -13.53 5.56 -100.95 -0.56 -14.09 16 13 C 0.09 1.43 2.66 -67.72 -0.18 1.25 16 14 H 0.07 1.23 7.24 -51.93 -0.38 0.86 16 15 C -0.10 -1.46 5.64 -26.73 -0.15 -1.61 16 16 C -0.12 -1.54 5.69 -26.73 -0.15 -1.69 16 17 C -0.11 -1.41 4.98 -26.73 -0.13 -1.55 16 18 C 0.08 1.25 1.69 -67.71 -0.11 1.14 16 19 H 0.05 0.84 6.25 -51.93 -0.32 0.52 16 20 N -0.54 -7.68 4.89 -243.17 -1.19 -8.87 16 21 C 0.02 0.25 9.32 60.07 0.56 0.81 16 22 C 0.02 0.27 9.11 60.06 0.55 0.82 16 23 C -0.14 -2.22 4.43 -26.73 -0.12 -2.34 16 24 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 25 H 0.04 0.94 5.19 -51.93 -0.27 0.67 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.34 6.93 5.08 -39.29 -0.20 6.73 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.07 7.23 -51.93 -0.38 0.70 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 6.32 -51.92 -0.33 0.37 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.77 6.10 -51.93 -0.32 0.46 16 37 H 0.03 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.05 6.24 -51.93 -0.32 0.72 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.14 5.70 -51.93 -0.30 0.84 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -28.89 304.71 -8.09 -36.97 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.36 Total: 4.94 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 0.05 Total: -14.25 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.98 Total: -49.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.39 Total: 16.87 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.89 -8.09 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380230537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.864 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds