Wall clock time and date at job start Mon Mar 30 2020 21:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47178 * 2 1 4 4 N 1.46897 * 109.47319 * 120.00120 * 2 1 3 5 5 C 1.53004 * 109.47148 * 240.00410 * 2 1 3 6 6 H 1.08998 * 110.34789 * 302.14274 * 5 2 1 7 7 C 1.54593 * 110.30574 * 64.28406 * 5 2 1 8 8 C 1.54940 * 102.92076 * 140.87567 * 7 5 2 9 9 N 1.48527 * 103.22655 * 322.58272 * 8 7 5 10 10 C 1.46903 * 111.00373 * 159.71657 * 9 8 7 11 11 C 1.53001 * 109.46718 * 52.60408 * 10 9 8 12 12 C 1.53001 * 109.47132 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46872 * 180.02562 * 12 11 10 14 14 C 1.50708 * 109.46973 * 180.02562 * 13 12 11 15 15 H 1.07991 * 119.99789 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00008 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00089 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.47910 * 105.81976 * 39.20964 * 9 8 7 23 23 H 1.08993 * 109.47472 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46981 * 299.99991 * 1 2 3 25 25 H 1.09001 * 109.46995 * 59.99566 * 1 2 3 26 26 H 1.00908 * 110.99479 * 59.99916 * 4 2 1 27 27 H 1.00896 * 111.00063 * 183.94803 * 4 2 1 28 28 H 1.09003 * 110.72259 * 259.22707 * 7 5 2 29 29 H 1.08997 * 110.72750 * 22.34008 * 7 5 2 30 30 H 1.08999 * 110.67290 * 204.14987 * 8 7 5 31 31 H 1.09003 * 110.67020 * 81.01728 * 8 7 5 32 32 H 1.08996 * 109.47104 * 292.61057 * 10 9 8 33 33 H 1.08999 * 109.47649 * 172.60279 * 10 9 8 34 34 H 1.09007 * 109.47231 * 60.00232 * 11 10 9 35 35 H 1.09000 * 109.47476 * 300.00237 * 11 10 9 36 36 H 1.08996 * 109.46845 * 60.00555 * 12 11 10 37 37 H 1.08996 * 109.47077 * 299.99725 * 12 11 10 38 38 H 1.08994 * 109.48028 * 60.00123 * 13 12 11 39 39 H 1.09000 * 109.47206 * 299.99977 * 13 12 11 40 40 H 0.96997 * 119.99848 * 180.02562 * 17 16 14 41 41 H 1.08991 * 109.92212 * 94.02422 * 22 9 8 42 42 H 1.08998 * 109.91228 * 215.12087 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.6537 -1.7399 -1.2831 7 6 1.6257 0.0524 -2.5220 8 6 2.8749 -0.0788 -3.4292 9 7 4.0039 0.0203 -2.4693 10 6 5.2321 -0.5485 -3.0404 11 6 5.5016 0.0874 -4.4057 12 6 6.7810 -0.5045 -5.0003 13 6 7.0508 0.1319 -6.3653 14 6 8.3108 -0.4516 -6.9513 15 1 8.8634 -1.2015 -6.4051 16 6 8.7572 -0.0287 -8.1854 17 7 9.8564 -0.5381 -8.6970 18 14 7.8008 1.2680 -9.1305 19 1 6.7939 0.6058 -9.9984 20 1 8.7359 2.0580 -9.9712 21 1 7.1123 2.1709 -8.1736 22 6 3.5797 -0.7325 -1.2688 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6961 -1.6480 1.2226 27 1 3.0262 -0.6502 1.2557 28 1 0.7582 -0.4124 -2.9907 29 1 1.4228 1.0977 -2.2892 30 1 2.9124 0.7358 -4.1526 31 1 2.8835 -1.0444 -3.9349 32 1 5.1130 -1.6255 -3.1584 33 1 6.0704 -0.3465 -2.3737 34 1 5.6206 1.1645 -4.2878 35 1 4.6633 -0.1146 -5.0725 36 1 6.6624 -1.5815 -5.1183 37 1 7.6191 -0.3020 -4.3335 38 1 7.1696 1.2089 -6.2472 39 1 6.2128 -0.0702 -7.0324 40 1 10.1707 -0.2403 -9.5650 41 1 3.9429 -1.7585 -1.3263 42 1 3.9689 -0.2508 -0.3718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385319091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:02:15 Heat of formation + Delta-G solvation = -46.392228 kcal Electronic energy + Delta-G solvation = -17260.428609 eV Core-core repulsion = 14659.028728 eV Total energy + Delta-G solvation = -2601.399882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53211 -37.50759 -36.07323 -34.42923 -32.50419 -30.55498 -29.47180 -29.07090 -26.17867 -23.55045 -23.14830 -21.95395 -21.29651 -20.83258 -18.86897 -17.25156 -16.92017 -16.67065 -16.30785 -16.11954 -15.40095 -15.13150 -14.82465 -14.53042 -14.09739 -13.87224 -13.68567 -13.49051 -13.02485 -12.93374 -12.87395 -12.42599 -12.36422 -12.21636 -12.12778 -12.00944 -11.76859 -11.73896 -11.50616 -11.37932 -11.34126 -11.18109 -10.78079 -9.57928 -9.40242 -8.31366 -6.35767 1.34342 1.36777 1.49340 2.35156 2.99568 3.03893 3.51336 3.65219 3.74182 3.88358 4.06837 4.11171 4.31753 4.37934 4.43273 4.44965 4.48204 4.57414 4.66256 4.70272 4.75394 4.81806 4.93370 4.95403 5.03288 5.06227 5.11040 5.15956 5.20634 5.21399 5.32608 5.37442 5.53236 5.61261 5.65896 5.93400 6.05004 6.27153 6.28150 6.60082 6.72438 7.29179 8.85711 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.056618 B = 0.003586 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.421455 B = 7805.193428 C = 8156.021912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 H 0.072 0.928 4 N -0.850 5.850 5 C -0.124 4.124 6 H 0.078 0.922 7 C -0.109 4.109 8 C 0.027 3.973 9 N -0.526 5.526 10 C 0.055 3.945 11 C -0.107 4.107 12 C -0.095 4.095 13 C -0.011 4.011 14 C -0.536 4.536 15 H 0.029 0.971 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.247 1.247 22 C 0.036 3.964 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.344 0.656 27 H 0.343 0.657 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.267 0.733 41 H 0.040 0.960 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.250 1.003 16.877 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.010 4.010 3 H 0.090 0.910 4 N -0.380 5.380 5 C -0.145 4.145 6 H 0.097 0.903 7 C -0.148 4.148 8 C -0.100 4.100 9 N -0.250 5.250 10 C -0.074 4.074 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.049 4.049 14 C -0.574 4.574 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.170 1.170 22 C -0.092 4.092 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.430 2.092 17.309 27.626 hybrid contribution 0.915 -1.350 -1.689 2.348 sum -20.515 0.742 15.620 25.795 Atomic orbital electron populations 1.21782 0.93722 1.02210 1.02193 1.21420 0.95889 0.97422 0.86279 0.90981 1.59026 1.16719 1.21764 1.40468 1.22837 0.94000 1.00373 0.97288 0.90316 1.22505 0.96667 1.01313 0.94268 1.23308 0.90682 1.00409 0.95619 1.64814 1.03120 1.51428 1.05668 1.22235 0.93144 0.96155 0.95827 1.21568 0.97190 1.00434 0.95248 1.21293 0.96720 0.99061 0.96207 1.19528 0.94563 0.96169 0.94593 1.21564 1.09419 1.22955 1.03479 0.95226 1.26085 0.95916 0.98941 0.98615 1.70077 1.24625 1.45617 1.19083 0.85597 0.78637 0.79344 0.78707 1.19007 1.20840 1.17009 1.23000 0.95564 0.96292 0.94352 0.92446 0.92388 0.91444 0.84319 0.84287 0.89749 0.90339 0.90283 0.94204 0.94971 0.90831 0.91801 0.91953 0.93629 0.93402 0.96315 0.96459 0.92460 0.94157 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.31 71.98 0.67 -1.00 16 2 C 0.10 1.39 2.72 44.92 0.12 1.51 16 3 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 4 N -0.85 -11.11 9.17 -168.68 -1.55 -12.66 16 5 C -0.12 -1.81 2.73 -9.92 -0.03 -1.84 16 6 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 7 C -0.11 -1.70 5.64 31.80 0.18 -1.52 16 8 C 0.03 0.58 5.10 86.65 0.44 1.02 16 9 N -0.53 -12.31 5.40 -883.02 -4.77 -17.07 16 10 C 0.05 1.46 5.03 86.30 0.43 1.89 16 11 C -0.11 -3.34 4.87 30.59 0.15 -3.19 16 12 C -0.09 -3.76 5.15 30.59 0.16 -3.61 16 13 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 14 C -0.54 -31.96 9.66 25.60 0.25 -31.71 16 15 H 0.03 1.93 7.99 -2.92 -0.02 1.91 16 16 C 0.00 0.05 5.47 84.65 0.46 0.51 16 17 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 18 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 22 C 0.04 0.66 5.99 86.44 0.52 1.18 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.72 7.35 -2.39 -0.02 0.70 16 26 H 0.34 3.71 9.00 -89.69 -0.81 2.90 16 27 H 0.34 4.29 7.39 -89.70 -0.66 3.63 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.21 7.77 -2.39 -0.02 1.20 16 30 H 0.08 1.74 7.66 -2.39 -0.02 1.73 16 31 H 0.04 0.88 8.00 -2.39 -0.02 0.86 16 32 H 0.03 0.86 7.81 -2.39 -0.02 0.84 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.06 1.88 6.79 -2.39 -0.02 1.87 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 39 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.04 0.76 7.57 -2.39 -0.02 0.74 16 42 H 0.08 1.41 6.42 -2.39 -0.02 1.40 16 Total: -1.00 -66.47 322.55 -1.20 -67.68 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.55 Total: 13.01 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.48 Total: -37.15 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -6.01 Total: -90.56 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -66.47 -1.20 -67.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385319091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.284 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds