Wall clock time and date at job start Mon Mar 30 2020 21:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47066 * 2 1 4 4 C 1.46899 * 111.00271 * 76.09916 * 3 2 1 5 5 C 1.52990 * 109.47265 * 199.46559 * 4 3 2 6 6 C 1.53009 * 109.47266 * 174.91041 * 5 4 3 7 7 C 1.50702 * 109.46974 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00401 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99680 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99869 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00089 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47193 * 179.97438 * 11 9 7 13 13 H 1.48502 * 109.46979 * 299.99885 * 11 9 7 14 14 H 1.48500 * 109.46864 * 59.99803 * 11 9 7 15 15 C 1.46901 * 111.00017 * 200.05551 * 3 2 1 16 16 H 1.08997 * 110.64670 * 189.19886 * 15 3 2 17 17 C 1.54593 * 110.72609 * 66.04341 * 15 3 2 18 18 C 1.54000 * 105.14095 * 219.68696 * 17 15 3 19 19 N 1.47900 * 107.05556 * 358.77289 * 18 17 15 20 20 C 1.46896 * 110.99853 * 145.84407 * 19 18 17 21 21 C 1.48535 * 105.82386 * 25.33075 * 19 18 17 22 22 H 1.09001 * 109.46950 * 294.88409 * 1 2 3 23 23 H 1.08996 * 109.47120 * 54.88996 * 1 2 3 24 24 H 1.09002 * 109.47118 * 174.89091 * 1 2 3 25 25 H 1.08999 * 109.47527 * 239.99858 * 2 1 3 26 26 H 1.09002 * 109.47485 * 119.99650 * 2 1 3 27 27 H 1.08996 * 109.47038 * 79.45712 * 4 3 2 28 28 H 1.09006 * 109.46841 * 319.46665 * 4 3 2 29 29 H 1.08998 * 109.47627 * 54.90487 * 5 4 3 30 30 H 1.09003 * 109.47181 * 294.90501 * 5 4 3 31 31 H 1.08998 * 109.47082 * 59.99982 * 6 5 4 32 32 H 1.08994 * 109.46583 * 300.00016 * 6 5 4 33 33 H 0.96994 * 120.00405 * 0.02562 * 10 9 7 34 34 H 1.08997 * 110.30615 * 338.60025 * 17 15 3 35 35 H 1.08997 * 110.30592 * 100.67089 * 17 15 3 36 36 H 1.08997 * 109.91744 * 118.12799 * 18 17 15 37 37 H 1.08993 * 109.91365 * 239.42218 * 18 17 15 38 38 H 1.09005 * 109.47120 * 60.13045 * 20 19 18 39 39 H 1.09001 * 109.47673 * 180.12439 * 20 19 18 40 40 H 1.08997 * 109.47315 * 300.12517 * 20 19 18 41 41 H 1.08997 * 110.67144 * 202.35692 * 21 19 18 42 42 H 1.09002 * 110.66177 * 79.22299 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8845 1.9912 1.3312 5 6 1.9313 3.5152 1.2048 6 6 1.6640 4.1489 2.5716 7 6 1.7107 5.6500 2.4471 8 1 1.9114 6.1065 1.4891 9 6 1.4983 6.4406 3.5565 10 7 1.2544 5.8848 4.7232 11 14 1.5554 8.3014 3.4022 12 1 1.2961 8.9163 4.7287 13 1 2.8960 8.7169 2.9169 14 1 0.5190 8.7501 2.4380 15 6 3.4097 1.4520 -0.4703 16 1 3.8199 2.4500 -0.3164 17 6 3.5039 1.0453 -1.9588 18 6 4.7894 0.2041 -2.0654 19 7 5.3976 0.1685 -0.7177 20 6 6.0595 -1.1197 -0.4728 21 6 4.2798 0.3826 0.2368 22 1 -0.3633 0.4324 0.9323 23 1 -0.3633 0.5910 -0.8406 24 1 -0.3633 -1.0236 -0.0915 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.7019 1.6542 1.9686 28 1 0.9333 1.6922 1.7718 29 1 1.1710 3.8446 0.4966 30 1 2.9155 3.8202 0.8492 31 1 2.4244 3.8195 3.2797 32 1 0.6799 3.8438 2.9272 33 1 1.2243 4.9186 4.8033 34 1 2.6370 0.4491 -2.2436 35 1 3.5765 1.9315 -2.5892 36 1 4.5454 -0.8076 -2.3896 37 1 5.4785 0.6671 -2.7717 38 1 6.8454 -1.2710 -1.2129 39 1 6.4963 -1.1198 0.5259 40 1 5.3283 -1.9244 -0.5496 41 1 4.6537 0.7589 1.1889 42 1 3.7154 -0.5387 0.3809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693503150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:55 Heat of formation + Delta-G solvation = -6.166877 kcal Electronic energy + Delta-G solvation = -17923.122956 eV Core-core repulsion = 15323.467377 eV Total energy + Delta-G solvation = -2599.655579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80898 -36.76420 -34.06702 -31.83350 -31.73157 -29.77058 -27.91010 -26.12495 -24.96327 -23.05826 -22.29783 -21.01690 -20.53739 -19.13158 -16.76919 -16.37224 -16.16004 -14.87311 -14.71200 -14.36631 -14.02322 -13.80078 -13.66935 -13.62821 -12.91727 -12.72127 -12.30757 -12.04257 -11.77358 -11.69503 -11.61341 -11.44787 -11.39490 -11.01269 -10.86715 -10.71868 -10.58839 -10.36807 -10.07711 -9.66118 -9.63226 -8.59317 -8.48024 -8.26086 -8.08395 -6.29744 -3.97835 3.48292 3.50615 3.69064 3.73032 4.16883 4.60320 4.63309 4.64137 4.96240 5.00117 5.14675 5.17917 5.23544 5.28674 5.39293 5.47436 5.49642 5.55581 5.64121 5.66275 5.72992 5.78211 5.86875 5.93054 6.00489 6.08486 6.19480 6.21460 6.34926 6.57990 6.68030 6.74847 6.84437 7.05524 7.31417 7.34963 7.51084 7.64084 8.30653 8.53988 8.95879 9.74214 11.10948 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027709 B = 0.004891 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.259827 B = 5723.622486 C = 6156.548205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 N -0.527 5.527 4 C 0.054 3.946 5 C -0.095 4.095 6 C 0.009 3.991 7 C -0.598 4.598 8 H 0.048 0.952 9 C 0.013 3.987 10 N -0.916 5.916 11 Si 1.068 2.932 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.083 3.917 16 H 0.101 0.899 17 C -0.125 4.125 18 C 0.035 3.965 19 N -0.519 5.519 20 C 0.017 3.983 21 C 0.000 4.000 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.004 0.996 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 -15.068 -12.226 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 N -0.250 5.250 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.029 4.029 7 C -0.636 4.636 8 H 0.066 0.934 9 C -0.190 4.190 10 N -0.552 5.552 11 Si 0.897 3.103 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.027 4.027 16 H 0.119 0.881 17 C -0.163 4.163 18 C -0.093 4.093 19 N -0.243 5.243 20 C -0.132 4.132 21 C -0.129 4.129 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.100 0.900 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.623 -12.997 -11.639 18.048 hybrid contribution 0.144 -2.678 -0.360 2.706 sum 4.767 -15.675 -11.999 20.308 Atomic orbital electron populations 1.21774 0.94905 1.00874 1.02868 1.22112 0.96153 0.89913 1.00003 1.62243 1.18455 1.16895 1.27377 1.22349 1.00374 0.97233 0.87352 1.21473 1.00783 0.90842 1.00168 1.19201 0.95551 0.96297 0.91816 1.22059 1.52860 0.91512 0.97194 0.93353 1.25847 0.93853 1.06749 0.92571 1.70780 1.46041 1.13371 1.25036 0.83556 0.76469 0.74568 0.75732 1.20835 1.21473 1.21460 1.22692 0.87160 0.99353 0.93491 0.88055 1.22489 0.96703 1.00295 0.96841 1.22902 0.95852 0.98828 0.91710 1.64658 1.25696 1.31294 1.02682 1.22507 0.98775 0.89455 1.02437 1.24001 0.92350 0.99214 0.97370 0.92482 0.91800 0.92881 0.91437 0.95017 0.95139 0.91257 0.92432 0.93433 0.97818 0.97631 0.92215 0.90783 0.90480 0.94056 0.90290 0.91380 0.91325 0.95693 0.90020 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.96 37.16 0.37 -1.37 16 2 C 0.05 0.58 4.07 -3.82 -0.02 0.56 16 3 N -0.53 -7.83 4.35 -224.43 -0.98 -8.81 16 4 C 0.05 0.95 4.73 -3.83 -0.02 0.93 16 5 C -0.09 -2.03 5.19 -26.73 -0.14 -2.17 16 6 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 7 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 10 N -0.92 -28.70 13.65 55.43 0.76 -27.95 16 11 Si 1.07 25.91 29.90 -169.99 -5.08 20.83 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.08 1.15 2.98 -65.85 -0.20 0.96 16 16 H 0.10 1.62 6.73 -51.93 -0.35 1.27 16 17 C -0.12 -1.45 6.28 -25.37 -0.16 -1.61 16 18 C 0.04 0.38 6.70 -2.75 -0.02 0.36 16 19 N -0.52 -6.30 5.55 -238.72 -1.33 -7.62 16 20 C 0.02 0.17 9.40 60.06 0.56 0.73 16 21 C 0.00 0.00 5.26 -1.90 -0.01 -0.01 16 22 H 0.06 0.74 6.91 -51.93 -0.36 0.38 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.77 6.04 -51.93 -0.31 0.45 16 26 H 0.03 0.40 7.00 -51.93 -0.36 0.04 16 27 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 28 H 0.07 1.22 6.58 -51.93 -0.34 0.88 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 31 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 32 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 33 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 34 H 0.07 0.83 6.32 -51.93 -0.33 0.50 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.40 7.73 -51.93 -0.40 -0.01 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.23 8.00 -51.93 -0.42 -0.19 16 41 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 42 H 0.05 0.61 5.66 -51.93 -0.29 0.32 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -31.02 319.26 -9.57 -40.59 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.60 Total: -2.77 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.15 Total: -19.08 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -1.55 Total: -44.38 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.02 -9.57 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693503150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.423 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds