Wall clock time and date at job start Mon Mar 30 2020 21:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99879 * 2 1 4 4 C 1.46900 * 111.00439 * 123.95327 * 2 1 3 5 5 C 1.52995 * 109.47422 * 170.00009 * 4 2 1 6 6 C 1.52998 * 109.47345 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47345 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47422 * 180.02562 * 7 6 5 9 9 C 1.47907 * 110.99845 * 69.87288 * 8 7 6 10 10 C 1.53990 * 107.05675 * 145.84878 * 9 8 7 11 11 C 1.54597 * 105.14143 * 358.77466 * 10 9 8 12 12 H 1.09000 * 110.72471 * 96.39833 * 11 10 9 13 13 C 1.50707 * 110.72575 * 219.68700 * 11 10 9 14 14 H 1.08000 * 119.99714 * 118.54332 * 13 11 10 15 15 C 1.37876 * 119.99732 * 298.54642 * 13 11 10 16 16 N 1.31513 * 120.00216 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99722 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46830 * 59.99946 * 17 15 13 19 19 H 1.48498 * 109.46922 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47131 * 299.99919 * 17 15 13 21 21 C 1.48529 * 111.00554 * 187.27125 * 8 7 6 22 22 H 1.08997 * 109.46990 * 296.04469 * 1 2 3 23 23 H 1.08994 * 109.47225 * 56.05219 * 1 2 3 24 24 H 1.09001 * 109.46496 * 176.04737 * 1 2 3 25 25 H 1.09002 * 109.47363 * 183.95885 * 3 2 1 26 26 H 1.09009 * 109.47296 * 303.95495 * 3 2 1 27 27 H 1.09000 * 109.47602 * 63.95056 * 3 2 1 28 28 H 1.08999 * 109.46867 * 49.99638 * 4 2 1 29 29 H 1.09001 * 109.46877 * 290.00338 * 4 2 1 30 30 H 1.09000 * 109.47007 * 60.00322 * 5 4 2 31 31 H 1.09001 * 109.47364 * 300.00032 * 5 4 2 32 32 H 1.08999 * 109.46826 * 59.99701 * 6 5 4 33 33 H 1.09001 * 109.46995 * 300.00355 * 6 5 4 34 34 H 1.08999 * 109.47403 * 60.00055 * 7 6 5 35 35 H 1.09001 * 109.47364 * 300.00129 * 7 6 5 36 36 H 1.08996 * 109.91720 * 26.48982 * 9 8 7 37 37 H 1.09002 * 109.91750 * 265.19957 * 9 8 7 38 38 H 1.09005 * 110.30685 * 239.86077 * 10 9 8 39 39 H 1.09005 * 110.31310 * 117.69074 * 10 9 8 40 40 H 0.96995 * 119.99865 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.67056 * 81.84058 * 21 8 7 42 42 H 1.08999 * 110.66437 * 318.71748 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9703 6 6 4.0530 -1.7525 2.1554 7 6 5.5620 -1.9413 1.9885 8 7 6.0886 -2.7072 3.1260 9 6 5.6320 -4.1131 3.0751 10 6 6.7722 -4.9791 3.6421 11 6 7.9041 -3.9831 3.9838 12 1 7.8718 -3.7093 5.0383 13 6 9.2488 -4.5593 3.6218 14 1 9.8679 -4.0655 2.8874 15 6 9.6886 -5.7168 4.2282 16 7 8.9345 -6.3184 5.1220 17 14 11.3550 -6.4314 3.7789 18 1 12.4175 -5.4400 4.0850 19 1 11.5909 -7.6691 4.5648 20 1 11.3811 -6.7535 2.3295 21 6 7.5724 -2.7618 3.0900 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8524 24 1 -0.3632 -1.0253 -0.0708 25 1 3.0827 1.3433 -0.0709 26 1 1.5897 1.9164 -0.8525 27 1 1.7043 1.8724 0.9232 28 1 1.5090 -1.7406 1.1756 29 1 1.7976 -0.2247 2.0628 30 1 3.9909 0.0194 0.9323 31 1 3.7025 -1.4965 0.0451 32 1 3.5665 -2.7271 2.1939 33 1 3.8550 -1.2109 3.0804 34 1 6.0482 -0.9664 1.9502 35 1 5.7604 -2.4827 1.0634 36 1 5.4258 -4.3995 2.0439 37 1 4.7357 -4.2347 3.6834 38 1 7.1115 -5.6951 2.8936 39 1 6.4414 -5.4987 4.5414 40 1 9.2441 -7.1325 5.5489 41 1 8.0012 -1.8511 3.5083 42 1 7.9268 -2.9225 2.0718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690799708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:01:53 Heat of formation + Delta-G solvation = -9.130563 kcal Electronic energy + Delta-G solvation = -17243.150126 eV Core-core repulsion = 14643.366032 eV Total energy + Delta-G solvation = -2599.784095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.34218 -37.70243 -34.42507 -32.65399 -30.34812 -28.13726 -27.84615 -27.41883 -24.61771 -23.43896 -21.58297 -20.82722 -19.85331 -19.22275 -16.29470 -16.00634 -15.57175 -15.20529 -15.05142 -14.63022 -14.37324 -14.07600 -13.19762 -12.99835 -12.65413 -12.42493 -12.31793 -12.04735 -11.94800 -11.62345 -11.50878 -11.21690 -11.02546 -10.89783 -10.73419 -10.63711 -10.46754 -10.22808 -10.09910 -9.60557 -9.15283 -8.74127 -8.59397 -8.36936 -7.68831 -5.99478 -4.02921 3.32998 3.37692 3.40088 3.72426 4.43481 4.65130 4.83728 4.90839 5.02490 5.12607 5.24571 5.32337 5.33937 5.40877 5.46054 5.58516 5.59361 5.65285 5.75882 5.85425 5.91812 5.98654 6.08048 6.12804 6.29499 6.39351 6.46828 6.51977 6.60924 6.79393 6.81786 6.89829 7.19207 7.22690 7.64281 7.70958 7.80805 7.92395 8.07071 8.47779 8.99378 9.61064 11.10288 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.067379 B = 0.003496 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.457762 B = 8006.819629 C = 8188.258358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.055 3.945 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.049 3.951 8 N -0.524 5.524 9 C 0.035 3.965 10 C -0.102 4.102 11 C 0.053 3.947 12 H 0.035 0.965 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.041 3.959 22 H 0.024 0.976 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.027 0.973 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 10.962 -8.149 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.080 4.080 8 N -0.248 5.248 9 C -0.093 4.093 10 C -0.141 4.141 11 C 0.034 3.966 12 H 0.053 0.947 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.086 4.086 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.971 10.835 -7.990 19.402 hybrid contribution 0.833 -0.462 -0.263 0.988 sum -13.138 10.374 -8.253 18.664 Atomic orbital electron populations 1.22375 0.87520 1.02239 1.00297 1.61998 1.07683 1.14006 1.43709 1.22440 1.01350 0.88735 1.00211 1.22184 0.96222 0.98031 0.90846 1.21571 0.93839 1.00625 0.99232 1.21498 0.95473 1.00198 0.97819 1.22196 0.94793 0.98460 0.92517 1.64724 1.08837 1.11778 1.39452 1.22971 0.99409 0.88654 0.98256 1.22318 0.94143 0.97790 0.99852 1.19520 0.93290 0.88948 0.94851 0.94663 1.21069 1.02091 1.08919 1.23473 0.92711 1.24968 0.97085 0.96892 0.94920 1.69969 1.36931 1.18843 1.26852 0.86687 0.84593 0.78444 0.78427 1.20254 1.21317 1.20354 1.23360 0.85470 1.00540 0.99279 0.95774 0.91515 0.91357 0.90881 0.91649 0.95715 0.90785 0.94782 0.92046 0.91324 0.92062 0.91529 0.91683 0.95318 0.95471 0.92252 0.92834 0.92180 0.92999 0.92014 0.94858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 60.06 0.57 0.77 16 2 N -0.55 -5.51 5.02 -251.26 -1.26 -6.77 16 3 C 0.02 0.18 9.32 60.06 0.56 0.74 16 4 C 0.05 0.57 4.96 -3.83 -0.02 0.55 16 5 C -0.11 -1.28 5.14 -26.73 -0.14 -1.41 16 6 C -0.11 -1.47 5.27 -26.73 -0.14 -1.61 16 7 C 0.05 0.78 4.76 -3.83 -0.02 0.76 16 8 N -0.52 -10.23 5.27 -230.46 -1.21 -11.44 16 9 C 0.03 0.70 5.79 -2.75 -0.02 0.68 16 10 C -0.10 -2.46 5.50 -25.38 -0.14 -2.60 16 11 C 0.05 1.36 2.99 -89.91 -0.27 1.09 16 12 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.52 -14.35 8.42 -34.44 -0.29 -14.64 16 14 H 0.05 1.49 7.78 -52.49 -0.41 1.09 16 15 C 0.06 1.77 5.33 -17.82 -0.10 1.68 16 16 N -0.89 -25.73 12.44 55.43 0.69 -25.04 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.04 0.88 5.95 -1.90 -0.01 0.87 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 24 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 25 H 0.07 0.64 6.47 -51.93 -0.34 0.30 16 26 H 0.06 0.49 8.12 -51.92 -0.42 0.07 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.83 7.52 -51.93 -0.39 0.44 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.03 0.47 7.81 -51.93 -0.41 0.06 16 36 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.36 7.84 -51.93 -0.41 0.95 16 39 H 0.06 1.52 8.05 -51.93 -0.42 1.10 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -28.73 328.07 -9.99 -38.73 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -8.13 Total: -3.68 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 0.00 Total: -13.12 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -1.78 Total: -43.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.73 -9.99 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690799708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.598 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds