Wall clock time and date at job start Mon Mar 30 2020 21:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.52996 * 109.47259 * 240.00271 * 2 1 3 5 5 C 1.50707 * 109.47164 * 174.99938 * 4 2 1 6 6 H 1.07993 * 119.99723 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99694 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00385 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99676 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47190 * 89.99426 * 9 7 5 11 11 H 1.48490 * 109.47356 * 209.99593 * 9 7 5 12 12 H 1.48501 * 109.47002 * 329.99984 * 9 7 5 13 13 N 1.46901 * 109.47115 * 119.99803 * 2 1 3 14 14 C 1.49529 * 111.00197 * 296.65251 * 13 2 1 15 15 C 1.50883 * 104.90612 * 117.13697 * 14 13 2 16 16 H 1.09005 * 108.37079 * 280.22441 * 15 14 13 17 17 C 1.50855 * 123.38864 * 152.02337 * 15 14 13 18 18 S 1.84441 * 102.57497 * 206.74098 * 17 15 14 19 19 C 1.84772 * 97.02139 * 6.76217 * 18 17 15 20 20 C 1.52693 * 100.31409 * 24.60231 * 19 18 17 21 21 H 1.09002 * 110.84788 * 71.36920 * 20 19 18 22 22 C 1.50018 * 111.02451 * 56.52482 * 13 2 1 23 23 H 1.08998 * 109.47176 * 172.70440 * 1 2 3 24 24 H 1.09005 * 109.47348 * 292.70280 * 1 2 3 25 25 H 1.08998 * 109.47315 * 52.70343 * 1 2 3 26 26 H 1.08999 * 109.46887 * 294.99941 * 4 2 1 27 27 H 1.09003 * 109.47150 * 55.00086 * 4 2 1 28 28 H 0.96998 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.37241 * 358.24375 * 14 13 2 30 30 H 1.09002 * 110.37059 * 236.02375 * 14 13 2 31 31 H 1.09003 * 110.78998 * 325.01314 * 17 15 14 32 32 H 1.09005 * 110.79043 * 88.46719 * 17 15 14 33 33 H 1.08996 * 111.24623 * 142.36906 * 19 18 17 34 34 H 1.09000 * 111.24057 * 266.79183 * 19 18 17 35 35 H 1.09002 * 110.72915 * 93.95277 * 22 13 2 36 36 H 1.08997 * 111.01399 * 330.56904 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3583 8 7 3.5764 -1.8367 -3.3000 9 14 6.0920 -1.0600 -2.4374 10 1 6.7009 -2.2125 -1.7259 11 1 6.5290 -1.0674 -3.8565 12 1 6.5260 0.2052 -1.7922 13 7 2.0197 -0.6925 1.1995 14 6 1.6079 0.0311 2.4416 15 6 0.7154 -0.9378 3.1773 16 1 -0.2749 -0.9056 2.7230 17 6 0.5530 -0.9421 4.6771 18 16 0.1030 -2.6962 5.0273 19 6 0.3587 -3.3411 3.3147 20 6 1.3528 -2.3124 2.7808 21 1 2.3305 -2.4403 3.2455 22 6 1.4709 -2.0864 1.2779 23 1 -0.3633 -1.0193 -0.1305 24 1 -0.3634 0.3966 0.9481 25 1 -0.3634 0.6227 -0.8175 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2616 -2.1370 28 1 4.0608 -2.2434 -4.0354 29 1 1.0572 0.9370 2.1882 30 1 2.4817 0.2757 3.0455 31 1 1.4893 -0.6775 5.1684 32 1 -0.2485 -0.2689 4.9814 33 1 0.7941 -4.3402 3.3299 34 1 -0.5702 -3.3267 2.7445 35 1 2.1645 -2.7998 0.8328 36 1 0.4936 -2.1493 0.7992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712465708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:28 Heat of formation + Delta-G solvation = 7.981793 kcal Electronic energy + Delta-G solvation = -16021.709351 eV Core-core repulsion = 13631.868418 eV Total energy + Delta-G solvation = -2389.840933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89157 -35.42861 -32.58699 -30.86496 -30.34153 -27.41635 -26.36718 -25.29085 -22.87697 -20.94099 -20.22090 -18.86310 -16.32573 -16.25153 -15.94931 -15.33606 -14.57745 -14.38969 -14.25538 -13.38027 -12.99042 -12.60520 -12.49813 -12.20392 -12.01129 -11.65566 -11.58740 -11.33405 -11.24338 -11.09876 -10.82558 -10.71993 -10.49658 -10.34492 -9.98348 -9.75440 -9.18400 -9.03427 -8.28559 -7.82103 -7.62371 -5.91182 -3.89431 1.72288 2.18401 3.38290 3.44328 3.48427 4.28210 4.38158 4.51677 4.54878 5.00153 5.10084 5.16046 5.24994 5.36792 5.46316 5.50708 5.57817 5.61477 5.75289 5.78392 5.87596 5.88479 5.96040 6.21853 6.28876 6.33662 6.54815 6.62763 6.90162 7.39446 7.49712 7.75681 7.92214 8.09373 8.54547 9.16838 9.72801 11.20740 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.006013 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.124732 B = 4655.266349 C = 4855.887928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 H 0.072 0.928 4 C 0.031 3.969 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.493 5.493 14 C 0.056 3.944 15 C -0.136 4.136 16 H 0.073 0.927 17 C -0.041 4.041 18 S -0.321 6.321 19 C -0.045 4.045 20 C -0.114 4.114 21 H 0.099 0.901 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.257 0.743 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 0.777 12.855 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 H 0.090 0.910 4 C -0.006 4.006 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.216 5.216 14 C -0.073 4.073 15 C -0.156 4.156 16 H 0.092 0.908 17 C -0.189 4.189 18 S -0.093 6.093 19 C -0.194 4.194 20 C -0.134 4.134 21 H 0.117 0.883 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.106 0.121 13.694 15.428 hybrid contribution 0.382 0.565 -1.096 1.291 sum -6.723 0.687 12.598 14.296 Atomic orbital electron populations 1.22591 0.99756 1.01512 1.00557 1.22121 0.90041 0.98630 0.92298 0.90991 1.19167 0.96448 0.95289 0.89732 1.21172 0.91745 1.33115 1.07046 0.92101 1.25004 0.98064 0.95845 0.95935 1.69962 1.35247 1.36895 1.12353 0.86623 0.86348 0.78385 0.76775 1.20892 1.21610 1.20004 1.65281 1.55400 1.00490 1.00423 1.22298 0.97071 0.95565 0.92378 1.22471 1.01286 0.98141 0.93721 0.90816 1.23122 1.04728 0.93382 0.97703 1.87867 1.91270 1.11143 1.19053 1.23715 1.01964 1.01420 0.92259 1.22987 0.99346 0.92349 0.98740 0.88314 1.22708 0.99759 0.92416 0.91956 0.92769 0.94005 0.92505 0.96351 0.96330 0.93295 0.92141 0.90656 0.88766 0.88727 0.87737 0.89078 0.89158 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 8.50 37.16 0.32 -2.70 16 2 C 0.08 1.51 2.14 -67.71 -0.14 1.37 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.76 4.37 -27.88 -0.12 0.64 16 5 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.49 -8.85 5.00 -223.27 -1.12 -9.96 16 14 C 0.06 0.80 6.00 -3.42 -0.02 0.78 16 15 C -0.14 -1.68 2.30 -90.81 -0.21 -1.89 16 16 H 0.07 0.95 7.32 -51.93 -0.38 0.57 16 17 C -0.04 -0.45 7.21 36.08 0.26 -0.19 16 18 S -0.32 -4.03 23.30 -107.50 -2.50 -6.53 16 19 C -0.05 -0.54 7.08 37.00 0.26 -0.27 16 20 C -0.11 -1.52 2.90 -89.11 -0.26 -1.78 16 21 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 22 C 0.06 0.99 4.88 -2.36 -0.01 0.98 16 23 H 0.05 0.88 6.23 -51.93 -0.32 0.56 16 24 H 0.04 0.59 5.82 -51.93 -0.30 0.29 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.02 0.48 7.11 -51.93 -0.37 0.11 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 36 H 0.06 0.89 5.57 -51.93 -0.29 0.60 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -29.20 288.22 -9.67 -38.87 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.77 Total: -1.79 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.33 Total: -15.58 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.38 Total: -36.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.50 Total: -6.53 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.20 -9.67 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712465708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.848 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds