Wall clock time and date at job start Mon Mar 30 2020 21:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.52996 * 109.47259 * 240.00271 * 2 1 3 5 5 C 1.50707 * 109.47164 * 174.99938 * 4 2 1 6 6 H 1.07993 * 119.99723 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99694 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00385 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99676 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47190 * 89.99426 * 9 7 5 11 11 H 1.48490 * 109.47356 * 209.99593 * 9 7 5 12 12 H 1.48501 * 109.47002 * 329.99984 * 9 7 5 13 13 N 1.46901 * 109.47115 * 119.99803 * 2 1 3 14 14 C 1.49529 * 111.00197 * 296.65251 * 13 2 1 15 15 C 1.50883 * 104.90612 * 117.13697 * 14 13 2 16 16 H 1.09005 * 108.37079 * 280.22441 * 15 14 13 17 17 C 1.50855 * 123.38864 * 152.02337 * 15 14 13 18 18 S 1.84441 * 102.57497 * 206.74098 * 17 15 14 19 19 C 1.84772 * 97.02139 * 6.76217 * 18 17 15 20 20 C 1.52693 * 100.31409 * 24.60231 * 19 18 17 21 21 H 1.09002 * 110.84788 * 71.36920 * 20 19 18 22 22 C 1.50018 * 111.02451 * 56.52482 * 13 2 1 23 23 H 1.08998 * 109.47176 * 172.70440 * 1 2 3 24 24 H 1.09005 * 109.47348 * 292.70280 * 1 2 3 25 25 H 1.08998 * 109.47315 * 52.70343 * 1 2 3 26 26 H 1.08999 * 109.46887 * 294.99941 * 4 2 1 27 27 H 1.09003 * 109.47150 * 55.00086 * 4 2 1 28 28 H 0.96998 * 119.99747 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.37241 * 358.24375 * 14 13 2 30 30 H 1.09002 * 110.37059 * 236.02375 * 14 13 2 31 31 H 1.09003 * 110.78998 * 325.01314 * 17 15 14 32 32 H 1.09005 * 110.79043 * 88.46719 * 17 15 14 33 33 H 1.08996 * 111.24623 * 142.36906 * 19 18 17 34 34 H 1.09000 * 111.24057 * 266.79183 * 19 18 17 35 35 H 1.09002 * 110.72915 * 93.95277 * 22 13 2 36 36 H 1.08997 * 111.01399 * 330.56904 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3583 8 7 3.5764 -1.8367 -3.3000 9 14 6.0920 -1.0600 -2.4374 10 1 6.7009 -2.2125 -1.7259 11 1 6.5290 -1.0674 -3.8565 12 1 6.5260 0.2052 -1.7922 13 7 2.0197 -0.6925 1.1995 14 6 1.6079 0.0311 2.4416 15 6 0.7154 -0.9378 3.1773 16 1 -0.2749 -0.9056 2.7230 17 6 0.5530 -0.9421 4.6771 18 16 0.1030 -2.6962 5.0273 19 6 0.3587 -3.3411 3.3147 20 6 1.3528 -2.3124 2.7808 21 1 2.3305 -2.4403 3.2455 22 6 1.4709 -2.0864 1.2779 23 1 -0.3633 -1.0193 -0.1305 24 1 -0.3634 0.3966 0.9481 25 1 -0.3634 0.6227 -0.8175 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2616 -2.1370 28 1 4.0608 -2.2434 -4.0354 29 1 1.0572 0.9370 2.1882 30 1 2.4817 0.2757 3.0455 31 1 1.4893 -0.6775 5.1684 32 1 -0.2485 -0.2689 4.9814 33 1 0.7941 -4.3402 3.3299 34 1 -0.5702 -3.3267 2.7445 35 1 2.1645 -2.7998 0.8328 36 1 0.4936 -2.1493 0.7992 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712465708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:28 Heat of formation + Delta-G solvation = -9.507796 kcal Electronic energy + Delta-G solvation = -16022.467756 eV Core-core repulsion = 13631.868418 eV Total energy + Delta-G solvation = -2390.599338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12068 -36.87568 -34.59611 -31.96792 -31.76174 -29.20646 -27.52781 -26.56785 -24.79146 -22.20397 -21.28104 -20.35816 -18.37769 -17.29017 -17.17506 -16.71130 -16.38115 -15.70799 -15.38480 -14.74023 -14.36207 -14.03280 -13.83793 -13.65651 -13.32070 -13.07107 -12.98339 -12.76632 -12.64371 -12.55214 -12.37832 -12.30028 -12.01465 -11.69460 -11.52385 -11.15905 -11.01302 -10.74533 -10.48225 -8.98831 -8.77612 -8.10102 -6.14972 0.78888 1.24356 1.42467 1.43067 1.53836 2.47556 3.00404 3.25415 3.33523 3.51604 3.96636 4.04814 4.13948 4.18226 4.26102 4.30917 4.40695 4.49977 4.55860 4.64823 4.68842 4.75861 4.84601 4.92328 5.03734 5.11510 5.14244 5.25834 5.32045 5.47383 5.70608 5.89419 6.15053 6.29808 6.48599 6.99332 7.51292 9.01841 Molecular weight = 241.12amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.006013 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.124732 B = 4655.266349 C = 4855.887928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.036 3.964 5 C -0.501 4.501 6 H 0.058 0.942 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.520 5.520 14 C 0.060 3.940 15 C -0.121 4.121 16 H 0.075 0.925 17 C -0.031 4.031 18 S -0.343 6.343 19 C -0.038 4.038 20 C -0.106 4.106 21 H 0.090 0.910 22 C 0.064 3.936 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.058 0.942 26 H -0.004 1.004 27 H -0.009 1.009 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 1.564 14.630 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 H 0.084 0.916 4 C -0.001 4.001 5 C -0.539 4.539 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.244 5.244 14 C -0.069 4.069 15 C -0.142 4.142 16 H 0.094 0.906 17 C -0.179 4.179 18 S -0.115 6.115 19 C -0.186 4.186 20 C -0.127 4.127 21 H 0.109 0.891 22 C -0.065 4.065 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.333 0.918 15.489 17.162 hybrid contribution 0.459 0.318 -1.649 1.741 sum -6.874 1.236 13.841 15.503 Atomic orbital electron populations 1.22449 0.97053 1.01640 1.02177 1.21782 0.92141 0.97385 0.90843 0.91564 1.19020 0.95171 0.94341 0.91549 1.21501 0.93328 1.32417 1.06648 0.92421 1.25834 1.02773 0.95678 0.95734 1.70087 1.37047 1.38013 1.13058 0.85593 0.80780 0.78656 0.76848 1.20436 1.21260 1.19052 1.65100 1.56653 1.01349 1.01276 1.22291 0.97921 0.95893 0.90781 1.22324 1.00645 0.96447 0.94749 0.90618 1.23151 1.06003 0.92426 0.96291 1.88003 1.91376 1.12685 1.19440 1.23689 1.01824 1.01320 0.91814 1.22828 0.99638 0.93977 0.96258 0.89142 1.22550 0.98706 0.91193 0.94078 0.93066 0.91188 0.92338 0.98557 0.99048 0.93285 0.90928 0.90090 0.87839 0.86697 0.86987 0.88278 0.92479 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.43 8.50 71.98 0.61 -4.82 16 2 C 0.09 3.38 2.14 44.91 0.10 3.48 16 3 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 4 C 0.04 1.85 4.37 29.85 0.13 1.98 16 5 C -0.50 -28.10 8.84 25.60 0.23 -27.87 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 N -0.52 -18.34 5.00 -860.29 -4.30 -22.64 16 14 C 0.06 1.56 6.00 85.10 0.51 2.07 16 15 C -0.12 -2.66 2.30 -10.91 -0.03 -2.69 16 16 H 0.08 1.68 7.32 -2.38 -0.02 1.67 16 17 C -0.03 -0.57 7.21 71.28 0.51 -0.06 16 18 S -0.34 -7.77 23.30 -56.49 -1.32 -9.08 16 19 C -0.04 -0.84 7.08 71.88 0.51 -0.33 16 20 C -0.11 -2.69 2.90 -9.82 -0.03 -2.72 16 21 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 22 C 0.06 2.09 4.88 85.51 0.42 2.51 16 23 H 0.05 1.62 6.23 -2.39 -0.01 1.60 16 24 H 0.07 1.78 5.82 -2.38 -0.01 1.77 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.00 -0.21 7.11 -2.39 -0.02 -0.23 16 27 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.07 1.73 6.63 -2.38 -0.02 1.72 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 36 H 0.06 1.83 5.57 -2.39 -0.01 1.81 16 Total: -1.00 -63.15 288.22 1.16 -61.99 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.04 Total: 7.71 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.42 Total: -28.22 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -4.02 Total: -79.67 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.32 Total: -9.08 kcal Total: -63.15 1.16 -61.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712465708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.481 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds