Wall clock time and date at job start Mon Mar 30 2020 21:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45191 * 109.47005 * 2 1 4 4 C 1.34231 * 117.00280 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99538 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00434 * 180.02562 * 4 3 2 7 7 H 1.09008 * 109.46806 * 299.99966 * 6 4 3 8 8 C 1.53002 * 109.47289 * 59.99633 * 6 4 3 9 9 N 1.46897 * 109.47252 * 179.97438 * 6 4 3 10 10 C 1.48538 * 111.00123 * 177.39547 * 9 6 4 11 11 C 1.54933 * 103.22579 * 200.28130 * 10 9 6 12 12 C 1.54593 * 102.92591 * 37.41127 * 11 10 9 13 13 H 1.08998 * 110.30989 * 96.95784 * 12 11 10 14 14 C 1.50700 * 110.31084 * 219.12964 * 12 11 10 15 15 H 1.08000 * 120.00330 * 115.71577 * 14 12 11 16 16 C 1.37886 * 119.99791 * 295.71403 * 14 12 11 17 17 N 1.31512 * 119.99547 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 119.99901 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47229 * 90.00265 * 18 16 14 20 20 H 1.48499 * 109.47014 * 209.99991 * 18 16 14 21 21 H 1.48504 * 109.47289 * 329.99755 * 18 16 14 22 22 C 1.47899 * 111.00068 * 59.99704 * 9 6 4 23 23 H 1.09002 * 109.47571 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47115 * 299.99590 * 1 2 3 25 25 H 1.08997 * 109.47655 * 59.99704 * 1 2 3 26 26 H 1.09007 * 109.46998 * 240.00305 * 2 1 3 27 27 H 1.08998 * 109.47149 * 120.00435 * 2 1 3 28 28 H 1.08998 * 109.47076 * 60.00363 * 8 6 4 29 29 H 1.08999 * 109.46753 * 180.02562 * 8 6 4 30 30 H 1.09002 * 109.47201 * 300.00205 * 8 6 4 31 31 H 1.09007 * 110.66246 * 318.71191 * 10 9 6 32 32 H 1.08993 * 110.66698 * 81.83885 * 10 9 6 33 33 H 1.09007 * 110.72333 * 279.05054 * 11 10 9 34 34 H 1.09004 * 110.72411 * 155.77248 * 11 10 9 35 35 H 0.97004 * 119.99277 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.91646 * 26.49394 * 22 9 6 37 37 H 1.08998 * 109.92144 * 265.19786 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4701 -0.8896 8 6 3.4497 3.6837 1.2499 9 7 5.3876 2.8605 -0.0001 10 6 5.9917 4.2161 -0.0626 11 6 7.4270 3.9412 -0.5771 12 6 7.2160 2.7983 -1.5965 13 1 7.1522 3.2002 -2.6076 14 6 8.3386 1.7975 -1.5001 15 1 8.1340 0.7852 -1.1842 16 6 9.6270 2.1742 -1.8152 17 7 10.6067 1.3009 -1.7306 18 14 9.9810 3.9253 -2.3609 19 1 10.2922 4.7605 -1.1731 20 1 11.1417 3.9300 -3.2871 21 1 8.7906 4.4773 -3.0562 22 6 5.8807 2.1438 -1.1962 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7860 3.1511 2.1394 29 1 3.8660 4.6910 1.2500 30 1 2.3611 3.7407 1.2504 31 1 5.4464 4.8483 -0.7634 32 1 6.0184 4.6714 0.9273 33 1 8.0735 3.6163 0.2383 34 1 7.8369 4.8244 -1.0671 35 1 11.5131 1.5661 -1.9519 36 1 5.1615 2.2401 -2.0096 37 1 6.0391 1.0917 -0.9596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397745840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:16 Heat of formation + Delta-G solvation = -78.847810 kcal Electronic energy + Delta-G solvation = -17989.918244 eV Core-core repulsion = 15153.559226 eV Total energy + Delta-G solvation = -2836.359018 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49120 -38.34538 -36.30296 -33.96074 -32.14896 -31.54325 -28.89633 -28.51752 -24.86214 -24.12749 -22.84842 -21.06234 -19.95123 -19.40407 -17.50410 -16.90965 -16.54442 -16.06606 -15.51015 -14.66157 -14.37680 -13.94646 -13.58130 -12.98924 -12.90048 -12.68325 -12.55462 -12.33565 -12.01680 -11.91301 -11.86303 -11.61393 -11.30602 -11.07946 -10.72322 -10.54085 -10.41179 -10.05414 -10.00028 -9.74138 -9.42887 -8.95694 -8.50388 -7.92841 -5.99955 -3.97649 2.43528 2.65379 3.31496 3.39378 3.40597 4.34988 4.46637 4.70805 4.81193 4.90086 5.04481 5.14883 5.17429 5.29418 5.44238 5.55413 5.62675 5.68165 5.74005 5.78643 5.82856 5.92906 6.03522 6.12628 6.23853 6.50095 6.68544 6.71648 6.86257 7.10895 7.27268 7.44378 7.65921 7.83443 8.03018 8.61698 9.06476 9.61892 11.13551 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.005868 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.946491 B = 4770.857971 C = 5255.049847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.477 6.477 6 C 0.083 3.917 7 H 0.073 0.927 8 C -0.138 4.138 9 N -0.498 5.498 10 C 0.040 3.960 11 C -0.129 4.129 12 C 0.004 3.996 13 H 0.031 0.969 14 C -0.501 4.501 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.056 3.944 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.262 0.738 36 H 0.017 0.983 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.735 4.473 3.821 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.361 6.361 6 C -0.027 4.027 7 H 0.090 0.910 8 C -0.196 4.196 9 N -0.224 5.224 10 C -0.087 4.087 11 C -0.168 4.168 12 C -0.016 4.016 13 H 0.049 0.951 14 C -0.539 4.539 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.071 4.071 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.199 3.824 4.272 19.081 hybrid contribution 0.102 1.131 -1.088 1.573 sum -18.096 4.956 3.185 19.031 Atomic orbital electron populations 1.21789 0.92851 1.02784 1.03323 1.22972 0.95050 0.80602 1.02695 1.86468 1.24936 1.32097 1.84718 1.23626 0.80268 0.92785 0.73154 1.90715 1.59867 1.42640 1.42891 1.21428 0.91414 0.89263 1.00589 0.90983 1.21764 1.01089 1.00413 0.96292 1.64769 1.01496 1.14390 1.41784 1.23252 0.96433 0.89179 0.99882 1.22977 0.94277 0.98714 1.00806 1.20034 0.93684 0.93832 0.94019 0.95118 1.21064 0.90359 0.97660 1.44780 0.90552 1.24996 0.96246 0.96947 0.95005 1.69912 1.00327 1.34449 1.49428 0.86923 0.77610 0.85905 0.78857 1.20223 1.22034 1.19205 1.23039 0.95581 1.00724 0.87722 0.90397 0.91590 0.91609 0.91297 0.91273 0.91251 0.91084 0.91344 0.94576 0.90710 0.90164 0.93151 0.92781 0.96424 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -5.00 10.12 -39.26 -0.40 -5.39 16 4 C 0.46 7.60 6.98 36.00 0.25 7.85 16 5 O -0.48 -9.60 14.08 -18.75 -0.26 -9.86 16 6 C 0.08 1.27 2.26 -68.87 -0.16 1.12 16 7 H 0.07 1.01 8.01 -51.92 -0.42 0.60 16 8 C -0.14 -1.64 9.04 37.16 0.34 -1.31 16 9 N -0.50 -9.48 4.90 -223.88 -1.10 -10.58 16 10 C 0.04 0.69 5.52 -1.90 -0.01 0.68 16 11 C -0.13 -2.78 4.93 -24.87 -0.12 -2.90 16 12 C 0.00 0.09 2.43 -90.41 -0.22 -0.13 16 13 H 0.03 0.75 7.09 -51.93 -0.37 0.38 16 14 C -0.50 -14.49 8.96 -34.44 -0.31 -14.80 16 15 H 0.08 2.44 7.59 -52.49 -0.40 2.04 16 16 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 18 Si 0.88 21.85 24.86 -169.99 -4.23 17.62 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.33 6.40 56.52 0.36 -5.97 16 22 C 0.06 1.23 5.00 -2.75 -0.01 1.22 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.80 8.13 -51.92 -0.42 0.38 16 27 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.76 7.00 -51.93 -0.36 0.40 16 30 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.04 0.56 7.96 -51.93 -0.41 0.15 16 32 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 33 H 0.08 1.86 7.86 -51.92 -0.41 1.45 16 34 H 0.05 1.04 6.17 -51.93 -0.32 0.71 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.02 0.36 7.71 -51.93 -0.40 -0.04 16 37 H 0.09 2.36 6.21 -51.93 -0.32 2.04 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -32.68 294.13 -6.45 -39.13 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.94 Total: -1.70 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.27 Total: -6.22 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.32 Total: -38.01 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.66 Total: -15.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.23 Total: 17.62 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.68 -6.45 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.721 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds