Wall clock time and date at job start Mon Mar 30 2020 21:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45191 * 109.47005 * 2 1 4 4 C 1.34231 * 117.00280 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99538 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00434 * 180.02562 * 4 3 2 7 7 H 1.09008 * 109.46806 * 299.99966 * 6 4 3 8 8 C 1.53002 * 109.47289 * 59.99633 * 6 4 3 9 9 N 1.46897 * 109.47252 * 179.97438 * 6 4 3 10 10 C 1.48538 * 111.00123 * 177.39547 * 9 6 4 11 11 C 1.54933 * 103.22579 * 200.28130 * 10 9 6 12 12 C 1.54593 * 102.92591 * 37.41127 * 11 10 9 13 13 H 1.08998 * 110.30989 * 96.95784 * 12 11 10 14 14 C 1.50700 * 110.31084 * 219.12964 * 12 11 10 15 15 H 1.08000 * 120.00330 * 115.71577 * 14 12 11 16 16 C 1.37886 * 119.99791 * 295.71403 * 14 12 11 17 17 N 1.31512 * 119.99547 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 119.99901 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47229 * 90.00265 * 18 16 14 20 20 H 1.48499 * 109.47014 * 209.99991 * 18 16 14 21 21 H 1.48504 * 109.47289 * 329.99755 * 18 16 14 22 22 C 1.47899 * 111.00068 * 59.99704 * 9 6 4 23 23 H 1.09002 * 109.47571 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47115 * 299.99590 * 1 2 3 25 25 H 1.08997 * 109.47655 * 59.99704 * 1 2 3 26 26 H 1.09007 * 109.46998 * 240.00305 * 2 1 3 27 27 H 1.08998 * 109.47149 * 120.00435 * 2 1 3 28 28 H 1.08998 * 109.47076 * 60.00363 * 8 6 4 29 29 H 1.08999 * 109.46753 * 180.02562 * 8 6 4 30 30 H 1.09002 * 109.47201 * 300.00205 * 8 6 4 31 31 H 1.09007 * 110.66246 * 318.71191 * 10 9 6 32 32 H 1.08993 * 110.66698 * 81.83885 * 10 9 6 33 33 H 1.09007 * 110.72333 * 279.05054 * 11 10 9 34 34 H 1.09004 * 110.72411 * 155.77248 * 11 10 9 35 35 H 0.97004 * 119.99277 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.91646 * 26.49394 * 22 9 6 37 37 H 1.08998 * 109.92144 * 265.19786 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4701 -0.8896 8 6 3.4497 3.6837 1.2499 9 7 5.3876 2.8605 -0.0001 10 6 5.9917 4.2161 -0.0626 11 6 7.4270 3.9412 -0.5771 12 6 7.2160 2.7983 -1.5965 13 1 7.1522 3.2002 -2.6076 14 6 8.3386 1.7975 -1.5001 15 1 8.1340 0.7852 -1.1842 16 6 9.6270 2.1742 -1.8152 17 7 10.6067 1.3009 -1.7306 18 14 9.9810 3.9253 -2.3609 19 1 10.2922 4.7605 -1.1731 20 1 11.1417 3.9300 -3.2871 21 1 8.7906 4.4773 -3.0562 22 6 5.8807 2.1438 -1.1962 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.7860 3.1511 2.1394 29 1 3.8660 4.6910 1.2500 30 1 2.3611 3.7407 1.2504 31 1 5.4464 4.8483 -0.7634 32 1 6.0184 4.6714 0.9273 33 1 8.0735 3.6163 0.2383 34 1 7.8369 4.8244 -1.0671 35 1 11.5131 1.5661 -1.9519 36 1 5.1615 2.2401 -2.0096 37 1 6.0391 1.0917 -0.9596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397745840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:15 Heat of formation + Delta-G solvation = -102.460176 kcal Electronic energy + Delta-G solvation = -17990.942153 eV Core-core repulsion = 15153.559226 eV Total energy + Delta-G solvation = -2837.382927 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.76438 -39.80682 -37.59355 -35.60919 -33.97888 -32.53569 -30.44909 -30.11021 -26.13060 -25.96184 -23.84154 -22.41999 -21.33853 -21.17442 -19.10680 -18.61456 -17.76775 -17.35736 -16.94097 -16.25511 -16.04235 -15.20967 -14.83231 -14.72409 -14.32851 -13.97515 -13.68950 -13.61906 -13.35686 -13.14784 -12.97803 -12.87464 -12.59579 -12.54266 -12.44876 -12.09206 -11.77438 -11.67235 -11.54006 -11.40541 -11.21669 -11.02169 -10.72380 -9.35709 -8.27298 -6.31672 1.17027 1.34171 1.38285 1.48457 1.54966 2.36407 2.97202 3.08621 3.64204 3.89868 3.95281 3.98562 4.05876 4.09173 4.27345 4.30838 4.33687 4.40735 4.69937 4.79175 4.80319 4.88530 4.91599 4.92538 5.03276 5.13231 5.16310 5.26969 5.33785 5.41144 5.52839 5.69399 5.97089 6.08317 6.33633 6.73306 6.79137 7.32065 8.90589 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.005868 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.946491 B = 4770.857971 C = 5255.049847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.460 3.540 5 O -0.527 6.527 6 C 0.080 3.920 7 H 0.097 0.903 8 C -0.130 4.130 9 N -0.520 5.520 10 C 0.050 3.950 11 C -0.129 4.129 12 C -0.002 4.002 13 H 0.036 0.964 14 C -0.513 4.513 15 H 0.018 0.982 16 C 0.007 3.993 17 N -0.957 5.957 18 Si 0.952 3.048 19 H -0.258 1.258 20 H -0.294 1.294 21 H -0.240 1.240 22 C 0.069 3.931 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.031 0.969 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.153 8.051 3.868 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.303 3.697 5 O -0.414 6.414 6 C -0.030 4.030 7 H 0.115 0.885 8 C -0.187 4.187 9 N -0.246 5.246 10 C -0.076 4.076 11 C -0.168 4.168 12 C -0.021 4.021 13 H 0.054 0.946 14 C -0.551 4.551 15 H 0.037 0.963 16 C -0.189 4.189 17 N -0.597 5.597 18 Si 0.776 3.224 19 H -0.182 1.182 20 H -0.221 1.221 21 H -0.163 1.163 22 C -0.059 4.059 23 H 0.116 0.884 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.675 7.419 4.335 22.390 hybrid contribution 0.780 -0.160 -1.073 1.336 sum -19.895 7.259 3.262 21.428 Atomic orbital electron populations 1.21798 0.89601 1.04385 1.03995 1.23279 0.97508 0.79430 1.02052 1.86467 1.23317 1.33447 1.83943 1.24082 0.80807 0.93010 0.71774 1.90719 1.61101 1.44269 1.45359 1.21653 0.88916 0.88944 1.03447 0.88549 1.21782 1.02691 1.00591 0.93675 1.64620 1.04348 1.15506 1.40156 1.23280 0.93489 0.88616 1.02229 1.22826 0.97045 0.97724 0.99163 1.20003 0.92864 0.93947 0.95284 0.94594 1.21301 0.92680 0.96592 1.44483 0.96318 1.26000 0.95602 1.02427 0.94899 1.70093 1.01010 1.37422 1.51194 0.85752 0.78172 0.79451 0.79072 1.18249 1.22127 1.16338 1.22641 0.95164 0.98579 0.89498 0.88356 0.90717 0.91047 0.92260 0.91835 0.92463 0.88921 0.88904 0.91264 0.87792 0.92823 0.91365 0.92588 0.95032 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 10.29 71.98 0.74 -1.14 16 2 C 0.05 1.12 6.19 71.98 0.45 1.57 16 3 O -0.36 -9.21 10.12 -51.43 -0.52 -9.73 16 4 C 0.46 14.88 6.98 71.23 0.50 15.38 16 5 O -0.53 -22.05 14.08 21.97 0.31 -21.74 16 6 C 0.08 2.23 2.26 44.17 0.10 2.33 16 7 H 0.10 2.28 8.01 -2.38 -0.02 2.26 16 8 C -0.13 -2.57 9.04 71.98 0.65 -1.92 16 9 N -0.52 -18.96 4.90 -862.23 -4.23 -23.19 16 10 C 0.05 1.54 5.52 86.65 0.48 2.02 16 11 C -0.13 -5.25 4.93 31.80 0.16 -5.10 16 12 C 0.00 -0.07 2.43 -10.66 -0.03 -0.10 16 13 H 0.04 1.69 7.09 -2.39 -0.02 1.68 16 14 C -0.51 -31.16 8.96 25.60 0.23 -30.93 16 15 H 0.02 1.30 7.59 -2.91 -0.02 1.28 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.96 -62.43 13.96 21.45 0.30 -62.13 16 18 Si 0.95 44.71 24.86 68.60 1.71 46.41 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 21 H -0.24 -10.16 6.40 99.48 0.64 -9.52 16 22 C 0.07 3.06 5.00 86.45 0.43 3.49 16 23 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.41 8.13 -2.38 -0.02 1.39 16 27 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.46 7.00 -2.39 -0.02 1.45 16 30 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 31 H 0.07 1.72 7.96 -2.38 -0.02 1.70 16 32 H 0.10 2.64 7.67 -2.39 -0.02 2.62 16 33 H 0.05 2.44 7.86 -2.38 -0.02 2.42 16 34 H 0.07 2.51 6.17 -2.38 -0.01 2.50 16 35 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 36 H 0.03 1.27 7.71 -2.39 -0.02 1.26 16 37 H 0.05 2.62 6.21 -2.39 -0.01 2.60 16 Total: -1.00 -76.60 294.13 2.70 -73.90 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.97 Total: 10.01 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.17 Total: -13.54 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -3.93 Total: -85.32 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.21 Total: -31.47 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.71 Total: 46.41 kcal Total: -76.60 2.70 -73.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.560 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds