Wall clock time and date at job start Mon Mar 30 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47424 * 2 1 4 4 C 1.34224 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00281 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46903 * 60.00238 * 6 4 3 8 8 C 1.53002 * 109.47466 * 300.00252 * 6 4 3 9 9 N 1.46897 * 109.47326 * 180.02562 * 6 4 3 10 10 C 1.48813 * 111.18681 * 177.66711 * 9 6 4 11 11 C 1.54933 * 103.35205 * 159.50572 * 10 9 6 12 12 C 1.54594 * 102.91997 * 322.69117 * 11 10 9 13 13 H 1.09011 * 110.39051 * 262.99616 * 12 11 10 14 14 C 1.50696 * 110.30989 * 140.87684 * 12 11 10 15 15 H 1.08005 * 119.99925 * 244.28300 * 14 12 11 16 16 C 1.37874 * 120.00428 * 64.28222 * 14 12 11 17 17 N 1.31514 * 119.99877 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00237 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47441 * 59.99246 * 18 16 14 20 20 H 1.48502 * 109.47254 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46917 * 299.99795 * 18 16 14 22 22 C 1.47905 * 111.00050 * 295.00046 * 9 6 4 23 23 H 1.09001 * 109.46948 * 59.99974 * 1 2 3 24 24 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47000 * 300.00209 * 1 2 3 26 26 H 1.08996 * 109.47505 * 240.00042 * 2 1 3 27 27 H 1.09001 * 109.46948 * 120.00026 * 2 1 3 28 28 H 1.09006 * 109.46694 * 59.99489 * 8 6 4 29 29 H 1.08995 * 109.47418 * 179.97438 * 8 6 4 30 30 H 1.08998 * 109.46901 * 300.00267 * 8 6 4 31 31 H 1.08998 * 110.51915 * 41.07024 * 10 9 6 32 32 H 1.09009 * 110.83927 * 278.09443 * 10 9 6 33 33 H 1.08999 * 110.72416 * 204.32980 * 11 10 9 34 34 H 1.08999 * 110.72531 * 81.04521 * 11 10 9 35 35 H 0.97006 * 120.00195 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.91668 * 94.80258 * 22 9 6 37 37 H 1.09002 * 109.91761 * 333.70433 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4700 0.8896 8 6 3.4499 3.6837 -1.2499 9 7 5.3878 2.8604 0.0001 10 6 5.9974 4.2167 -0.0569 11 6 7.4332 3.9864 0.4778 12 6 7.2226 2.9361 1.5925 13 1 7.1607 3.4226 2.5660 14 6 8.3444 1.9300 1.5820 15 1 8.1389 0.8943 1.3550 16 6 9.6333 2.3316 1.8619 17 7 9.8837 3.5927 2.1387 18 14 11.0240 1.0846 1.8482 19 1 11.1246 0.4700 0.5001 20 1 12.3022 1.7649 2.1782 21 1 10.7510 0.0275 2.8549 22 6 5.8865 2.2504 1.2518 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3613 3.7407 -1.2504 29 1 3.8662 4.6910 -1.2500 30 1 3.7862 3.1510 -2.1394 31 1 5.4533 4.9076 0.5871 32 1 6.0234 4.5875 -1.0817 33 1 7.8441 4.9084 0.8892 34 1 8.0784 3.5917 -0.3070 35 1 10.7905 3.8754 2.3354 36 1 6.0439 1.1816 1.1070 37 1 5.1693 2.4144 2.0562 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397745841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:18 Heat of formation + Delta-G solvation = -85.985818 kcal Electronic energy + Delta-G solvation = -17909.055736 eV Core-core repulsion = 15072.387191 eV Total energy + Delta-G solvation = -2836.668545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39830 -38.13210 -36.22612 -33.85023 -32.09056 -31.41260 -28.41646 -28.22430 -24.77067 -24.19899 -22.80816 -20.90248 -19.72534 -19.37391 -17.44235 -16.61302 -16.41198 -15.97755 -15.22786 -14.62453 -14.31746 -13.97225 -13.50042 -12.95312 -12.91638 -12.48638 -12.26186 -12.09376 -11.89383 -11.76712 -11.62709 -11.42916 -11.02938 -10.83082 -10.67446 -10.54482 -10.47205 -10.19621 -9.89933 -9.63431 -9.22646 -8.74362 -8.34438 -7.77649 -5.95460 -3.96272 2.49720 2.71269 3.38692 3.41935 3.46496 4.48574 4.53245 4.76909 4.82947 4.93400 5.12685 5.18474 5.25461 5.38224 5.56236 5.64471 5.68760 5.79530 5.82296 5.89243 6.01757 6.16777 6.21286 6.27461 6.55657 6.58859 6.98376 7.16911 7.22852 7.42233 7.61905 7.69877 7.95386 8.04743 8.10648 8.51463 9.05082 9.66769 11.14781 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034234 B = 0.005695 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.714501 B = 4915.550857 C = 5524.814317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.480 6.480 6 C 0.083 3.917 7 H 0.072 0.928 8 C -0.139 4.139 9 N -0.500 5.500 10 C 0.033 3.967 11 C -0.091 4.091 12 C 0.040 3.960 13 H 0.030 0.970 14 C -0.505 4.505 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.046 3.954 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.259 0.741 36 H 0.084 0.916 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -0.612 -4.775 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.283 6.283 4 C 0.303 3.697 5 O -0.364 6.364 6 C -0.027 4.027 7 H 0.089 0.911 8 C -0.196 4.196 9 N -0.226 5.226 10 C -0.094 4.094 11 C -0.130 4.130 12 C 0.021 3.979 13 H 0.048 0.952 14 C -0.543 4.543 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.081 4.081 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -15.986 -1.144 -5.178 16.842 hybrid contribution 0.559 -0.370 0.773 1.023 sum -15.427 -1.514 -4.405 16.115 Atomic orbital electron populations 1.21788 0.92884 1.02729 1.03345 1.22955 0.95039 0.80741 1.02583 1.86478 1.25078 1.31961 1.84745 1.23705 0.80132 0.92881 0.72958 1.90688 1.59970 1.42667 1.43061 1.21408 0.91842 0.88980 1.00460 0.91065 1.21783 1.01054 1.00517 0.96289 1.64764 1.01023 1.18611 1.38178 1.23442 0.97851 0.88366 0.99767 1.22414 0.91470 0.99898 0.99207 1.19507 0.90437 0.93573 0.94375 0.95164 1.21158 0.91802 0.94499 1.46831 0.92456 1.24964 0.98687 0.95188 0.95204 1.69956 1.20394 1.15044 1.47867 0.86670 0.81336 0.81491 0.78575 1.20237 1.21436 1.20361 1.23193 0.97003 1.01167 0.86765 0.91589 0.90453 0.91591 0.91365 0.91376 0.91439 0.90978 0.91393 0.94936 0.91308 0.91983 0.91789 0.93112 0.89786 0.96788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -5.18 10.12 -39.24 -0.40 -5.58 16 4 C 0.46 7.90 7.02 36.00 0.25 8.15 16 5 O -0.48 -9.84 14.46 -18.75 -0.27 -10.11 16 6 C 0.08 1.35 2.30 -68.87 -0.16 1.20 16 7 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 8 C -0.14 -1.77 8.93 37.16 0.33 -1.44 16 9 N -0.50 -10.01 4.86 -223.64 -1.09 -11.10 16 10 C 0.03 0.62 5.33 -1.74 -0.01 0.61 16 11 C -0.09 -2.14 5.75 -24.87 -0.14 -2.29 16 12 C 0.04 1.03 2.87 -90.42 -0.26 0.77 16 13 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 14 C -0.50 -14.35 8.37 -34.44 -0.29 -14.64 16 15 H 0.06 1.65 7.34 -52.48 -0.39 1.27 16 16 C 0.06 1.72 5.34 -17.82 -0.10 1.62 16 17 N -0.89 -25.95 12.63 55.43 0.70 -25.25 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.05 1.04 5.20 -2.75 -0.01 1.03 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.07 0.85 6.90 -51.93 -0.36 0.49 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.56 8.02 -51.93 -0.42 0.15 16 32 H 0.07 1.16 7.68 -51.92 -0.40 0.76 16 33 H 0.06 1.49 8.12 -51.93 -0.42 1.07 16 34 H 0.06 1.63 7.86 -51.93 -0.41 1.22 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 2.11 6.41 -51.93 -0.33 1.78 16 37 H 0.01 0.30 7.65 -51.93 -0.40 -0.10 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -31.13 301.87 -7.35 -38.48 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.05 Total: -3.03 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 0.23 Total: -4.88 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.39 Total: -36.35 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.67 Total: -15.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.13 -7.35 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.509 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds