Wall clock time and date at job start Mon Mar 30 2020 21:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45204 * 109.47424 * 2 1 4 4 C 1.34224 * 117.00262 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99980 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00281 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46903 * 60.00238 * 6 4 3 8 8 C 1.53002 * 109.47466 * 300.00252 * 6 4 3 9 9 N 1.46897 * 109.47326 * 180.02562 * 6 4 3 10 10 C 1.48813 * 111.18681 * 177.66711 * 9 6 4 11 11 C 1.54933 * 103.35205 * 159.50572 * 10 9 6 12 12 C 1.54594 * 102.91997 * 322.69117 * 11 10 9 13 13 H 1.09011 * 110.39051 * 262.99616 * 12 11 10 14 14 C 1.50696 * 110.30989 * 140.87684 * 12 11 10 15 15 H 1.08005 * 119.99925 * 244.28300 * 14 12 11 16 16 C 1.37874 * 120.00428 * 64.28222 * 14 12 11 17 17 N 1.31514 * 119.99877 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00237 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47441 * 59.99246 * 18 16 14 20 20 H 1.48502 * 109.47254 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46917 * 299.99795 * 18 16 14 22 22 C 1.47905 * 111.00050 * 295.00046 * 9 6 4 23 23 H 1.09001 * 109.46948 * 59.99974 * 1 2 3 24 24 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47000 * 300.00209 * 1 2 3 26 26 H 1.08996 * 109.47505 * 240.00042 * 2 1 3 27 27 H 1.09001 * 109.46948 * 120.00026 * 2 1 3 28 28 H 1.09006 * 109.46694 * 59.99489 * 8 6 4 29 29 H 1.08995 * 109.47418 * 179.97438 * 8 6 4 30 30 H 1.08998 * 109.46901 * 300.00267 * 8 6 4 31 31 H 1.08998 * 110.51915 * 41.07024 * 10 9 6 32 32 H 1.09009 * 110.83927 * 278.09443 * 10 9 6 33 33 H 1.08999 * 110.72416 * 204.32980 * 11 10 9 34 34 H 1.08999 * 110.72531 * 81.04521 * 11 10 9 35 35 H 0.97006 * 120.00195 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.91668 * 94.80258 * 22 9 6 37 37 H 1.09002 * 109.91761 * 333.70433 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4700 0.8896 8 6 3.4499 3.6837 -1.2499 9 7 5.3878 2.8604 0.0001 10 6 5.9974 4.2167 -0.0569 11 6 7.4332 3.9864 0.4778 12 6 7.2226 2.9361 1.5925 13 1 7.1607 3.4226 2.5660 14 6 8.3444 1.9300 1.5820 15 1 8.1389 0.8943 1.3550 16 6 9.6333 2.3316 1.8619 17 7 9.8837 3.5927 2.1387 18 14 11.0240 1.0846 1.8482 19 1 11.1246 0.4700 0.5001 20 1 12.3022 1.7649 2.1782 21 1 10.7510 0.0275 2.8549 22 6 5.8865 2.2504 1.2518 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3613 3.7407 -1.2504 29 1 3.8662 4.6910 -1.2500 30 1 3.7862 3.1510 -2.1394 31 1 5.4533 4.9076 0.5871 32 1 6.0234 4.5875 -1.0817 33 1 7.8441 4.9084 0.8892 34 1 8.0784 3.5917 -0.3070 35 1 10.7905 3.8754 2.3354 36 1 6.0439 1.1816 1.1070 37 1 5.1693 2.4144 2.0562 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397745841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:17 Heat of formation + Delta-G solvation = -106.104840 kcal Electronic energy + Delta-G solvation = -17909.928162 eV Core-core repulsion = 15072.387191 eV Total energy + Delta-G solvation = -2837.540971 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.71168 -39.69180 -37.55619 -35.59664 -33.75998 -32.45851 -30.06091 -29.96604 -26.26844 -25.91833 -23.81943 -22.34269 -21.30596 -21.13740 -18.83637 -18.45415 -17.74971 -17.32008 -16.76920 -16.38822 -16.01027 -15.24205 -14.72128 -14.54968 -14.12160 -13.71792 -13.62719 -13.56519 -13.14060 -13.10059 -12.93917 -12.88490 -12.63438 -12.51891 -12.39273 -12.29115 -11.99880 -11.59060 -11.52404 -11.28792 -11.15097 -10.84697 -10.50072 -9.33823 -8.14064 -6.21858 1.18471 1.39873 1.41748 1.49613 1.55533 2.43204 3.03559 3.17813 3.67386 3.93026 4.00054 4.05587 4.09335 4.11012 4.34712 4.39381 4.42779 4.54483 4.76871 4.80284 4.87667 4.92657 4.93430 4.99542 5.13856 5.22456 5.27545 5.36189 5.45403 5.51531 5.71854 5.84133 6.06611 6.13069 6.37955 6.80382 6.84237 7.44141 8.95276 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034234 B = 0.005695 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.714501 B = 4915.550857 C = 5524.814317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.464 3.536 5 O -0.524 6.524 6 C 0.078 3.922 7 H 0.089 0.911 8 C -0.131 4.131 9 N -0.515 5.515 10 C 0.048 3.952 11 C -0.085 4.085 12 C 0.031 3.969 13 H 0.005 0.995 14 C -0.529 4.529 15 H 0.043 0.957 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.273 1.273 22 C 0.062 3.938 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.161 -0.102 -5.564 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.307 3.693 5 O -0.412 6.412 6 C -0.031 4.031 7 H 0.107 0.893 8 C -0.188 4.188 9 N -0.241 5.241 10 C -0.079 4.079 11 C -0.123 4.123 12 C 0.012 3.988 13 H 0.023 0.977 14 C -0.567 4.567 15 H 0.061 0.939 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.778 3.222 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.199 1.199 22 C -0.066 4.066 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.709 -0.621 -5.972 18.699 hybrid contribution 1.007 -0.559 1.037 1.550 sum -16.702 -1.180 -4.935 17.456 Atomic orbital electron populations 1.21802 0.89700 1.04397 1.03935 1.23289 0.97449 0.79374 1.02147 1.86474 1.23306 1.33565 1.83957 1.23954 0.80780 0.92798 0.71763 1.90682 1.61133 1.44042 1.45332 1.21610 0.89219 0.89185 1.03129 0.89316 1.21798 1.02751 1.00480 0.93803 1.64632 1.03957 1.19180 1.36371 1.23346 0.94553 0.88329 1.01651 1.22168 0.94286 0.98268 0.97615 1.19491 0.91456 0.93874 0.93966 0.97671 1.21426 0.93344 0.94504 1.47443 0.93900 1.25673 1.00828 0.97024 0.94727 1.70050 1.20971 1.16392 1.48131 0.85708 0.78620 0.79325 0.78581 1.20012 1.20365 1.19878 1.22795 0.95918 0.99289 0.88553 0.90760 0.88257 0.91173 0.91641 0.92177 0.88826 0.89348 0.92119 0.92523 0.88451 0.93196 0.94494 0.92915 0.92811 0.95864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 1.12 6.19 71.98 0.45 1.56 16 3 O -0.36 -9.48 10.12 -51.36 -0.52 -10.00 16 4 C 0.46 15.39 7.02 71.24 0.50 15.89 16 5 O -0.52 -21.79 14.46 21.97 0.32 -21.47 16 6 C 0.08 2.37 2.30 44.17 0.10 2.47 16 7 H 0.09 2.43 7.96 -2.38 -0.02 2.41 16 8 C -0.13 -2.87 8.93 71.98 0.64 -2.23 16 9 N -0.52 -20.14 4.86 -861.45 -4.19 -24.32 16 10 C 0.05 1.71 5.33 86.59 0.46 2.17 16 11 C -0.08 -4.02 5.75 31.80 0.18 -3.84 16 12 C 0.03 1.65 2.87 -10.66 -0.03 1.62 16 13 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 14 C -0.53 -31.11 8.37 25.60 0.21 -30.90 16 15 H 0.04 2.58 7.34 -2.91 -0.02 2.55 16 16 C 0.02 0.95 5.34 84.65 0.45 1.40 16 17 N -0.92 -54.07 12.63 21.45 0.27 -53.80 16 18 Si 0.95 45.62 29.54 68.60 2.03 47.65 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 22 C 0.06 2.88 5.20 86.44 0.45 3.33 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 27 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.09 1.59 8.11 -2.38 -0.02 1.57 16 29 H 0.09 1.67 6.90 -2.39 -0.02 1.66 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.78 8.02 -2.39 -0.02 1.77 16 32 H 0.10 2.98 7.68 -2.38 -0.02 2.96 16 33 H 0.05 2.44 8.12 -2.39 -0.02 2.42 16 34 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 35 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 36 H 0.05 2.81 6.41 -2.39 -0.02 2.79 16 37 H 0.02 1.00 7.65 -2.39 -0.02 0.99 16 Total: -1.00 -69.12 301.87 3.10 -66.02 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.03 Total: 5.61 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.16 Total: -9.68 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -3.92 Total: -78.13 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.20 Total: -31.47 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.12 3.10 -66.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.084 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds