Wall clock time and date at job start Mon Mar 30 2020 21:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47446 * 2 1 4 4 C 1.34228 * 116.99600 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00385 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99651 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47144 * 59.99489 * 6 4 3 8 8 C 1.53001 * 109.47084 * 299.99574 * 6 4 3 9 9 N 1.46900 * 109.47392 * 180.02562 * 6 4 3 10 10 C 1.48720 * 111.01831 * 184.48997 * 9 6 4 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 6 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 H 1.08995 * 110.32672 * 118.84838 * 12 11 10 14 14 C 1.50701 * 110.32069 * 240.94890 * 12 11 10 15 15 H 1.08001 * 120.00030 * 118.54578 * 14 12 11 16 16 C 1.37881 * 120.00352 * 298.54543 * 14 12 11 17 17 N 1.31511 * 119.99467 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00369 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46989 * 90.00064 * 18 16 14 20 20 H 1.48497 * 109.47250 * 209.99973 * 18 16 14 21 21 H 1.48501 * 109.47363 * 330.00536 * 18 16 14 22 22 C 1.48567 * 110.99718 * 299.99979 * 9 6 4 23 23 H 1.08996 * 109.47035 * 300.00651 * 1 2 3 24 24 H 1.09007 * 109.46611 * 59.99713 * 1 2 3 25 25 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47035 * 239.99349 * 2 1 3 27 27 H 1.08998 * 109.46466 * 120.00111 * 2 1 3 28 28 H 1.08995 * 109.47501 * 300.00477 * 8 6 4 29 29 H 1.09000 * 109.46950 * 60.00264 * 8 6 4 30 30 H 1.09001 * 109.47166 * 179.97438 * 8 6 4 31 31 H 1.09004 * 110.38960 * 40.24251 * 10 9 6 32 32 H 1.08996 * 110.50963 * 277.74694 * 10 9 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 34 34 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 35 35 H 0.96999 * 119.99733 * 179.97438 * 17 16 14 36 36 H 1.08999 * 110.41133 * 82.17552 * 22 9 6 37 37 H 1.09001 * 110.41003 * 319.73948 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5446 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.5845 3.4699 0.8895 8 6 3.4501 3.6834 -1.2500 9 7 5.3879 2.8603 0.0001 10 6 5.9930 4.2145 0.1083 11 6 7.4225 3.9589 0.6324 12 6 7.3508 2.5954 1.3502 13 1 8.0194 1.8799 0.8716 14 6 7.7079 2.7509 2.8060 15 1 6.9843 2.5042 3.5689 16 6 8.9584 3.2082 3.1642 17 7 9.8394 3.5091 2.2352 18 14 9.4008 3.4017 4.9686 19 1 9.9926 2.1359 5.4717 20 1 10.3848 4.5033 5.1217 21 1 8.1768 3.7195 5.7471 22 6 5.8831 2.1404 1.2016 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.7864 3.1507 -2.1394 29 1 2.3616 3.7405 -1.2506 30 1 3.8664 4.6908 -1.2502 31 1 5.4324 4.8256 0.8157 32 1 6.0269 4.6967 -0.8686 33 1 7.7142 4.7409 1.3334 34 1 8.1275 3.9131 -0.1976 35 1 10.7190 3.8311 2.4871 36 1 5.8330 1.0626 1.0466 37 1 5.3056 2.4260 2.0808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397745842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:03:20 Heat of formation + Delta-G solvation = -85.983913 kcal Electronic energy + Delta-G solvation = -17917.462118 eV Core-core repulsion = 15080.793655 eV Total energy + Delta-G solvation = -2836.668462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43519 -38.10678 -36.24420 -33.88215 -32.12468 -31.42155 -28.36387 -28.18720 -24.76975 -24.25423 -22.80068 -20.93456 -19.84588 -19.28599 -17.42677 -16.59351 -16.30118 -15.94516 -15.27170 -14.65119 -14.23204 -14.13267 -13.45913 -13.18225 -12.92816 -12.46116 -12.25667 -12.11029 -11.91166 -11.78135 -11.52432 -11.49555 -11.00399 -10.90208 -10.60308 -10.52649 -10.47313 -10.25360 -9.91471 -9.62793 -9.16850 -8.69415 -8.35447 -7.86800 -5.98796 -4.02484 2.46754 2.70319 3.31769 3.38387 3.41220 4.41750 4.57514 4.75752 4.82403 4.92408 5.14695 5.17812 5.28177 5.34270 5.56609 5.64047 5.70396 5.80195 5.84254 5.90556 6.04294 6.18713 6.26422 6.43428 6.51811 6.61322 7.00785 7.16899 7.19628 7.51041 7.59383 7.71918 7.91667 8.02828 8.08663 8.49931 9.00458 9.61219 11.10429 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.005598 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.077658 B = 5000.927910 C = 5489.857574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.464 3.536 5 O -0.483 6.483 6 C 0.081 3.919 7 H 0.074 0.926 8 C -0.137 4.137 9 N -0.499 5.499 10 C 0.034 3.966 11 C -0.091 4.091 12 C 0.048 3.952 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.036 3.964 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 -1.097 -5.520 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.306 3.694 5 O -0.368 6.368 6 C -0.030 4.030 7 H 0.091 0.909 8 C -0.194 4.194 9 N -0.226 5.226 10 C -0.093 4.093 11 C -0.130 4.130 12 C 0.029 3.971 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.091 4.091 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -15.510 -1.632 -6.045 16.726 hybrid contribution 0.076 0.343 1.793 1.827 sum -15.434 -1.288 -4.252 16.061 Atomic orbital electron populations 1.21790 0.92865 1.02740 1.03372 1.22961 0.95074 0.80706 1.02583 1.86484 1.25008 1.31990 1.84645 1.23698 0.80154 0.92850 0.72747 1.90657 1.59871 1.42850 1.43412 1.21431 0.91973 0.88981 1.00583 0.90861 1.21745 1.00951 1.00521 0.96210 1.65456 1.01320 1.14419 1.41357 1.23277 0.97991 0.88859 0.99158 1.22203 0.91084 1.00930 0.98767 1.19370 0.89313 0.92795 0.95585 0.94759 1.21198 0.98562 1.44167 0.91434 0.92820 1.24960 0.96374 0.95448 0.97128 1.69989 1.05741 1.44633 1.32143 0.86641 0.78210 0.77747 0.85666 1.20679 1.21246 1.20029 1.23485 0.98596 0.99027 0.87962 0.91561 0.91589 0.90439 0.91359 0.91345 0.91467 0.91488 0.91037 0.94734 0.91561 0.91295 0.93432 0.93048 0.90140 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -5.15 10.12 -39.25 -0.40 -5.55 16 4 C 0.46 7.87 6.99 36.01 0.25 8.12 16 5 O -0.48 -9.69 13.82 -18.74 -0.26 -9.95 16 6 C 0.08 1.31 2.36 -68.86 -0.16 1.15 16 7 H 0.07 1.15 7.98 -51.93 -0.41 0.73 16 8 C -0.14 -1.75 9.08 37.16 0.34 -1.41 16 9 N -0.50 -9.94 4.99 -223.26 -1.11 -11.06 16 10 C 0.03 0.66 5.54 -2.09 -0.01 0.65 16 11 C -0.09 -2.17 5.74 -25.35 -0.15 -2.31 16 12 C 0.05 1.26 2.99 -90.39 -0.27 0.99 16 13 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.52 -14.41 8.37 -34.44 -0.29 -14.70 16 15 H 0.05 1.49 7.59 -52.49 -0.40 1.09 16 16 C 0.06 1.76 5.09 -17.82 -0.09 1.66 16 17 N -0.89 -25.68 12.35 55.43 0.68 -25.00 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.04 0.82 5.04 -2.18 -0.01 0.81 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.07 0.85 7.07 -51.93 -0.37 0.48 16 31 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 32 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 33 H 0.07 1.76 7.24 -51.93 -0.38 1.39 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.93 6.32 -51.93 -0.33 1.60 16 37 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -30.70 300.72 -7.38 -38.08 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.02 Total: -2.56 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 0.22 Total: -4.93 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.43 Total: -36.05 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.66 Total: -15.50 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.70 -7.38 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.907 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds